Wall clock time and date at job start Tue Mar 31 2020 18:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50489 * 2 1 4 4 C 1.53088 * 109.50671 * 120.09033 * 2 1 3 5 5 N 1.47018 * 109.25859 * 176.82448 * 4 2 1 6 6 C 1.38567 * 111.00460 * 177.60566 * 5 4 2 7 7 N 1.31222 * 126.37756 * 36.01093 * 6 5 4 8 8 N 1.28507 * 110.09488 * 180.02562 * 7 6 5 9 9 C 1.31208 * 109.96942 * 359.72549 * 8 7 6 10 10 C 1.47989 * 126.47430 * 180.29945 * 9 8 7 11 11 C 1.41021 * 126.25369 * 195.19280 * 10 9 8 12 12 N 1.30629 * 108.08211 * 179.97438 * 11 10 9 13 13 N 1.39998 * 108.59124 * 359.97438 * 12 11 10 14 14 C 1.46507 * 125.87338 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46852 * 304.97649 * 14 13 12 16 16 H 1.07995 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99583 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00155 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99661 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47238 * 89.99998 * 19 17 15 21 21 H 1.48497 * 109.47031 * 210.00012 * 19 17 15 22 22 H 1.48498 * 109.47530 * 330.00012 * 19 17 15 23 23 C 1.34821 * 108.26005 * 359.77242 * 13 12 11 24 24 N 1.36644 * 126.38790 * 216.03492 * 6 5 4 25 25 C 1.46502 * 127.17514 * 359.97438 * 24 6 5 26 26 C 1.47016 * 110.75237 * 301.38963 * 5 4 2 27 27 C 1.53099 * 109.26103 * 58.60796 * 26 5 4 28 28 O 1.43007 * 109.25811 * 303.15440 * 27 26 5 29 29 H 1.09006 * 109.47113 * 299.91122 * 1 2 3 30 30 H 1.09001 * 109.47298 * 59.90795 * 1 2 3 31 31 H 1.09006 * 109.47173 * 179.91272 * 1 2 3 32 32 H 1.09004 * 109.50909 * 56.89533 * 4 2 1 33 33 H 1.08997 * 109.54547 * 296.77754 * 4 2 1 34 34 H 1.07997 * 125.95912 * 359.95640 * 11 10 9 35 35 H 1.09000 * 109.46837 * 64.97926 * 14 13 12 36 36 H 1.09001 * 109.47018 * 184.97607 * 14 13 12 37 37 H 0.96997 * 120.00146 * 180.02562 * 18 17 15 38 38 H 1.08001 * 126.21785 * 180.25328 * 23 13 12 39 39 H 1.08998 * 109.47340 * 95.56269 * 25 24 6 40 40 H 1.09004 * 109.47175 * 335.56697 * 25 24 6 41 41 H 1.09002 * 109.47190 * 215.56820 * 25 24 6 42 42 H 1.08996 * 109.50848 * 178.55290 * 26 5 4 43 43 H 1.09006 * 109.50244 * 298.67363 * 26 5 4 44 44 H 1.08997 * 109.50411 * 183.21604 * 27 26 5 45 45 H 1.08997 * 109.53700 * 63.11048 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 1.2485 5 7 3.5094 -0.7872 1.2051 6 6 4.0144 -1.3889 2.3465 7 7 3.4712 -2.3843 3.0069 8 7 4.2025 -2.6955 4.0168 9 6 5.2608 -1.9210 4.0592 10 6 6.3453 -1.9676 5.0652 11 6 7.3136 -0.9684 5.2944 12 7 8.0948 -1.3746 6.2594 13 7 7.6620 -2.6370 6.6826 14 6 8.2687 -3.4403 7.7470 15 6 9.7345 -3.6350 7.4559 16 1 10.1705 -3.2031 6.5672 17 6 10.5190 -4.3635 8.3247 18 7 9.9881 -4.8890 9.4071 19 14 12.3360 -4.6042 7.9642 20 1 13.1136 -3.4996 8.5811 21 1 12.7852 -5.9017 8.5298 22 1 12.5538 -4.6025 6.4953 23 6 6.5874 -2.9839 5.9460 24 7 5.1706 -1.0563 2.9945 25 6 6.1192 -0.0019 2.6274 26 6 3.9649 -1.4868 -0.0050 27 6 3.4342 -0.7557 -1.2410 28 8 2.0084 -0.6761 -1.1660 29 1 -0.3634 0.5125 0.8908 30 1 -0.3634 0.5153 -0.8892 31 1 -0.3634 -1.0277 -0.0016 32 1 1.6338 -1.7341 1.2761 33 1 1.7268 -0.1798 2.1394 34 1 7.3953 -0.0310 4.7645 35 1 8.1528 -2.9262 8.7011 36 1 7.7758 -4.4113 7.7952 37 1 10.5400 -5.4012 10.0185 38 1 6.0219 -3.8998 6.0344 39 1 5.8950 0.9019 3.1938 40 1 6.0349 0.2075 1.5610 41 1 7.1334 -0.3306 2.8541 42 1 5.0545 -1.4999 -0.0295 43 1 3.5882 -2.5097 0.0025 44 1 3.7215 -1.3029 -2.1388 45 1 3.8535 0.2497 -1.2778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646660426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:19 Heat of formation + Delta-G solvation = 123.963370 kcal Electronic energy + Delta-G solvation = -27948.938024 eV Core-core repulsion = 24005.182637 eV Total energy + Delta-G solvation = -3943.755387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.79878 -40.57683 -39.97498 -36.21333 -34.96098 -33.81229 -33.22555 -31.89692 -31.08484 -29.40550 -28.18944 -27.62688 -27.02772 -26.02563 -23.69170 -23.48774 -22.28057 -21.47942 -20.69578 -20.06064 -19.73982 -17.61586 -16.95907 -16.75192 -16.48477 -16.32740 -16.11535 -15.52595 -15.28830 -14.84531 -14.73280 -14.63727 -14.31827 -14.18427 -13.42529 -13.32355 -13.08674 -12.86735 -12.70520 -12.49848 -12.37561 -12.30810 -11.94868 -11.82370 -11.62199 -11.47942 -11.09972 -11.06678 -10.95183 -10.69612 -10.37316 -10.23990 -10.12984 -10.07498 -9.86830 -9.66275 -8.98276 -8.87018 -8.64798 -7.62082 -6.33943 -4.39912 1.54185 2.11316 2.48687 2.74494 3.18513 3.22693 3.24924 3.29565 3.33178 3.42959 3.55187 4.23628 4.34456 4.43122 4.56102 4.60584 4.64652 4.73649 4.78601 4.95941 4.98936 5.00837 5.04766 5.13556 5.16387 5.17740 5.24277 5.32283 5.41045 5.43924 5.46867 5.64702 5.67321 5.80634 5.88779 5.97654 6.24986 6.31538 6.55286 6.65935 6.76165 6.87087 7.02810 7.14005 7.53494 7.72786 7.75286 8.28552 8.66836 8.84559 9.26310 10.75166 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030303 B = 0.002136 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.766160 B =13103.428331 C =13383.960172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.068 0.932 4 C 0.040 3.960 5 N -0.457 5.457 6 C 0.323 3.677 7 N -0.306 5.306 8 N -0.297 5.297 9 C 0.303 3.697 10 C -0.215 4.215 11 C 0.037 3.963 12 N -0.271 5.271 13 N -0.315 5.315 14 C 0.252 3.748 15 C -0.533 4.533 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.910 3.090 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.113 3.887 24 N -0.471 5.471 25 C 0.079 3.921 26 C 0.023 3.977 27 C 0.069 3.931 28 O -0.380 6.380 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.269 0.731 38 H 0.180 0.820 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.726 11.309 -19.437 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.086 0.914 4 C -0.088 4.088 5 N -0.183 5.183 6 C -0.033 4.033 7 N -0.150 5.150 8 N -0.138 5.138 9 C 0.038 3.962 10 C -0.231 4.231 11 C -0.150 4.150 12 N -0.092 5.092 13 N -0.092 5.092 14 C 0.135 3.865 15 C -0.571 4.571 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.737 3.263 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.042 4.042 24 N -0.165 5.165 25 C -0.065 4.065 26 C -0.105 4.105 27 C -0.008 4.008 28 O -0.299 6.299 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.191 0.809 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.197 0.803 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.494 10.731 -18.195 25.066 hybrid contribution 1.198 0.049 -0.687 1.382 sum -12.296 10.780 -18.881 24.978 Atomic orbital electron populations 1.21747 0.92210 1.03417 1.02854 1.22216 0.95317 0.95462 0.83766 0.91365 1.22817 0.83946 1.02318 0.99706 1.58794 1.11389 1.49873 0.98235 1.22027 0.88726 0.95962 0.96549 1.74458 1.24929 1.10739 1.04907 1.74378 1.02136 1.22659 1.14627 1.21916 0.95945 0.89748 0.88629 1.17207 1.01561 0.99819 1.04553 1.23814 0.93976 0.99311 0.97928 1.77338 1.21679 0.96029 1.14154 1.49553 1.19579 1.12871 1.27188 1.19921 0.94694 0.89038 0.82814 1.21181 0.92207 1.34289 1.09469 0.91196 1.24947 0.99622 0.94856 0.94560 1.69910 1.36761 1.34385 1.11919 0.86291 0.83603 0.77670 0.78732 1.20247 1.20905 1.19700 1.22568 0.90613 0.99167 0.91896 1.46043 1.19714 1.28833 1.21882 1.22126 0.92471 0.89193 1.02665 1.22948 1.01378 0.97372 0.88805 1.22646 0.81155 1.00338 0.96708 1.88015 1.20760 1.78371 1.42709 0.90684 0.91331 0.91481 0.91390 0.89202 0.80929 0.93108 0.92195 0.92150 0.80294 0.90046 0.89177 0.88937 0.89488 0.92195 0.87748 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.57 37.16 0.36 -0.55 16 2 C 0.09 0.72 3.42 -26.68 -0.09 0.63 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C 0.04 0.39 4.61 -3.71 -0.02 0.37 16 5 N -0.46 -4.89 4.71 -174.15 -0.82 -5.71 16 6 C 0.32 4.49 6.76 -318.62 -2.15 2.34 16 7 N -0.31 -5.20 11.60 30.35 0.35 -4.84 16 8 N -0.30 -5.44 12.21 32.60 0.40 -5.04 16 9 C 0.30 5.00 7.91 -153.85 -1.22 3.78 16 10 C -0.22 -3.72 6.05 -105.42 -0.64 -4.35 16 11 C 0.04 0.62 10.80 -17.01 -0.18 0.44 16 12 N -0.27 -5.63 12.36 30.83 0.38 -5.25 16 13 N -0.31 -6.75 3.66 -62.22 -0.23 -6.97 16 14 C 0.25 6.07 6.25 -5.19 -0.03 6.04 16 15 C -0.53 -14.19 9.23 -34.44 -0.32 -14.50 16 16 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 19 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.11 2.11 11.40 -16.81 -0.19 1.92 16 24 N -0.47 -6.33 3.23 -121.99 -0.39 -6.73 16 25 C 0.08 0.70 9.84 59.85 0.59 1.29 16 26 C 0.02 0.21 5.58 -3.71 -0.02 0.18 16 27 C 0.07 0.49 7.01 37.21 0.26 0.75 16 28 O -0.38 -3.46 10.47 -35.23 -0.37 -3.83 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.78 7.96 -51.93 -0.41 0.37 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.17 2.14 6.24 -52.49 -0.33 1.81 16 35 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.18 2.98 8.06 -52.49 -0.42 2.55 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 41 H 0.09 0.80 6.51 -51.93 -0.34 0.46 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -32.13 376.91 -9.58 -41.70 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.54 Total: -0.86 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.76 Total: -0.06 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.43 Total: -58.35 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.37 Total: -3.83 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.13 -9.58 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646660426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.665 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds