Wall clock time and date at job start Tue Mar 31 2020 18:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50489 * 2 1 4 4 C 1.53088 * 109.50671 * 120.09033 * 2 1 3 5 5 N 1.47018 * 109.25859 * 176.82448 * 4 2 1 6 6 C 1.38567 * 111.00460 * 177.60566 * 5 4 2 7 7 N 1.31222 * 126.37756 * 36.01093 * 6 5 4 8 8 N 1.28507 * 110.09488 * 180.02562 * 7 6 5 9 9 C 1.31208 * 109.96942 * 359.72549 * 8 7 6 10 10 C 1.47989 * 126.47430 * 180.29945 * 9 8 7 11 11 C 1.41021 * 126.25369 * 195.19280 * 10 9 8 12 12 N 1.30629 * 108.08211 * 179.97438 * 11 10 9 13 13 N 1.39998 * 108.59124 * 359.97438 * 12 11 10 14 14 C 1.46507 * 125.87338 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46852 * 304.97649 * 14 13 12 16 16 H 1.07995 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99583 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00155 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99661 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47238 * 89.99998 * 19 17 15 21 21 H 1.48497 * 109.47031 * 210.00012 * 19 17 15 22 22 H 1.48498 * 109.47530 * 330.00012 * 19 17 15 23 23 C 1.34821 * 108.26005 * 359.77242 * 13 12 11 24 24 N 1.36644 * 126.38790 * 216.03492 * 6 5 4 25 25 C 1.46502 * 127.17514 * 359.97438 * 24 6 5 26 26 C 1.47016 * 110.75237 * 301.38963 * 5 4 2 27 27 C 1.53099 * 109.26103 * 58.60796 * 26 5 4 28 28 O 1.43007 * 109.25811 * 303.15440 * 27 26 5 29 29 H 1.09006 * 109.47113 * 299.91122 * 1 2 3 30 30 H 1.09001 * 109.47298 * 59.90795 * 1 2 3 31 31 H 1.09006 * 109.47173 * 179.91272 * 1 2 3 32 32 H 1.09004 * 109.50909 * 56.89533 * 4 2 1 33 33 H 1.08997 * 109.54547 * 296.77754 * 4 2 1 34 34 H 1.07997 * 125.95912 * 359.95640 * 11 10 9 35 35 H 1.09000 * 109.46837 * 64.97926 * 14 13 12 36 36 H 1.09001 * 109.47018 * 184.97607 * 14 13 12 37 37 H 0.96997 * 120.00146 * 180.02562 * 18 17 15 38 38 H 1.08001 * 126.21785 * 180.25328 * 23 13 12 39 39 H 1.08998 * 109.47340 * 95.56269 * 25 24 6 40 40 H 1.09004 * 109.47175 * 335.56697 * 25 24 6 41 41 H 1.09002 * 109.47190 * 215.56820 * 25 24 6 42 42 H 1.08996 * 109.50848 * 178.55290 * 26 5 4 43 43 H 1.09006 * 109.50244 * 298.67363 * 26 5 4 44 44 H 1.08997 * 109.50411 * 183.21604 * 27 26 5 45 45 H 1.08997 * 109.53700 * 63.11048 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 1.2485 5 7 3.5094 -0.7872 1.2051 6 6 4.0144 -1.3889 2.3465 7 7 3.4712 -2.3843 3.0069 8 7 4.2025 -2.6955 4.0168 9 6 5.2608 -1.9210 4.0592 10 6 6.3453 -1.9676 5.0652 11 6 7.3136 -0.9684 5.2944 12 7 8.0948 -1.3746 6.2594 13 7 7.6620 -2.6370 6.6826 14 6 8.2687 -3.4403 7.7470 15 6 9.7345 -3.6350 7.4559 16 1 10.1705 -3.2031 6.5672 17 6 10.5190 -4.3635 8.3247 18 7 9.9881 -4.8890 9.4071 19 14 12.3360 -4.6042 7.9642 20 1 13.1136 -3.4996 8.5811 21 1 12.7852 -5.9017 8.5298 22 1 12.5538 -4.6025 6.4953 23 6 6.5874 -2.9839 5.9460 24 7 5.1706 -1.0563 2.9945 25 6 6.1192 -0.0019 2.6274 26 6 3.9649 -1.4868 -0.0050 27 6 3.4342 -0.7557 -1.2410 28 8 2.0084 -0.6761 -1.1660 29 1 -0.3634 0.5125 0.8908 30 1 -0.3634 0.5153 -0.8892 31 1 -0.3634 -1.0277 -0.0016 32 1 1.6338 -1.7341 1.2761 33 1 1.7268 -0.1798 2.1394 34 1 7.3953 -0.0310 4.7645 35 1 8.1528 -2.9262 8.7011 36 1 7.7758 -4.4113 7.7952 37 1 10.5400 -5.4012 10.0185 38 1 6.0219 -3.8998 6.0344 39 1 5.8950 0.9019 3.1938 40 1 6.0349 0.2075 1.5610 41 1 7.1334 -0.3306 2.8541 42 1 5.0545 -1.4999 -0.0295 43 1 3.5882 -2.5097 0.0025 44 1 3.7215 -1.3029 -2.1388 45 1 3.8535 0.2497 -1.2778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646660426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:18 Heat of formation + Delta-G solvation = 104.639251 kcal Electronic energy + Delta-G solvation = -27949.775981 eV Core-core repulsion = 24005.182637 eV Total energy + Delta-G solvation = -3944.593344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.96781 -42.04588 -40.72050 -37.04349 -36.11640 -35.60391 -33.84411 -33.58797 -32.43111 -30.46563 -29.45511 -28.51542 -28.47116 -26.85053 -25.48872 -24.18636 -23.62122 -22.48213 -21.70988 -21.42364 -20.94528 -18.80428 -18.50784 -17.91741 -17.70735 -17.25775 -17.11648 -16.51295 -16.29789 -16.14747 -16.05917 -15.68698 -15.48178 -15.19825 -14.83337 -14.31967 -14.24960 -14.01378 -13.75645 -13.71318 -13.35738 -13.17508 -12.99406 -12.97170 -12.77739 -12.70918 -12.63668 -12.30885 -12.17376 -11.97969 -11.82949 -11.62351 -11.48137 -11.18616 -11.02797 -10.77123 -10.70468 -10.40950 -9.97095 -9.02649 -8.35905 -6.49721 0.32381 1.03635 1.12966 1.38826 1.39352 1.44931 1.50359 1.71974 2.21512 2.34007 2.50711 2.76805 2.97244 3.34385 3.57796 3.68500 3.72626 3.86068 3.92969 3.95599 4.07556 4.11574 4.22745 4.27717 4.36002 4.36999 4.43449 4.52810 4.62544 4.68648 4.74149 4.80226 4.87912 4.89192 4.94968 4.99228 5.00715 5.06024 5.29031 5.39578 5.45565 5.52774 5.59992 5.78577 6.04442 6.09993 6.16970 6.58277 6.81414 7.20305 7.63445 8.72666 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030303 B = 0.002136 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.766160 B =13103.428331 C =13383.960172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 H 0.082 0.918 4 C 0.040 3.960 5 N -0.447 5.447 6 C 0.340 3.660 7 N -0.344 5.344 8 N -0.328 5.328 9 C 0.289 3.711 10 C -0.205 4.205 11 C 0.061 3.939 12 N -0.313 5.313 13 N -0.339 5.339 14 C 0.266 3.734 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.017 3.983 18 N -0.920 5.920 19 Si 0.973 3.027 20 H -0.272 1.272 21 H -0.275 1.275 22 H -0.270 1.270 23 C 0.103 3.897 24 N -0.464 5.464 25 C 0.066 3.934 26 C 0.022 3.978 27 C 0.072 3.928 28 O -0.396 6.396 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.219 0.781 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.273 0.727 38 H 0.190 0.810 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.038 0.962 44 H 0.124 0.876 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 13.349 -21.946 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.038 3.962 3 H 0.100 0.900 4 C -0.087 4.087 5 N -0.173 5.173 6 C -0.017 4.017 7 N -0.188 5.188 8 N -0.169 5.169 9 C 0.023 3.977 10 C -0.220 4.220 11 C -0.126 4.126 12 N -0.134 5.134 13 N -0.116 5.116 14 C 0.148 3.852 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.195 1.195 23 C -0.051 4.051 24 N -0.156 5.156 25 C -0.075 4.075 26 C -0.105 4.105 27 C -0.005 4.005 28 O -0.315 6.315 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.235 0.765 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.207 0.793 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.142 0.858 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.108 12.791 -20.727 27.659 hybrid contribution 0.941 -0.496 -0.061 1.066 sum -12.167 12.295 -20.789 27.044 Atomic orbital electron populations 1.21771 0.91171 1.03157 1.03966 1.22276 0.96139 0.95512 0.82310 0.89964 1.22868 0.83408 1.01430 1.01020 1.59065 1.11751 1.48956 0.97566 1.22398 0.88161 0.94564 0.96561 1.74397 1.26026 1.12748 1.05601 1.74278 1.03089 1.23886 1.15648 1.21680 0.95590 0.90850 0.89606 1.17244 1.01509 0.99304 1.03988 1.24470 0.91984 1.00099 0.96079 1.77283 1.23721 0.96161 1.16190 1.49200 1.20878 1.13574 1.27959 1.19450 0.93887 0.88922 0.82947 1.21364 0.93611 1.34392 1.09173 0.92366 1.25767 1.03815 0.94452 0.94306 1.69997 1.38320 1.34904 1.12663 0.85316 0.78488 0.77903 0.78541 1.19697 1.20019 1.19480 1.22874 0.90042 1.00175 0.91959 1.46222 1.20002 1.28820 1.20573 1.22550 0.91714 0.88530 1.04674 1.23060 1.02162 0.96473 0.88819 1.22803 0.80213 1.01320 0.96185 1.88010 1.21924 1.78633 1.42934 0.89415 0.90370 0.92452 0.93548 0.89374 0.76516 0.95390 0.92668 0.91819 0.79334 0.87952 0.86758 0.88301 0.88257 0.94329 0.85786 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.57 71.98 0.69 -0.87 16 2 C 0.10 1.32 3.42 30.62 0.10 1.42 16 3 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 4 C 0.04 0.75 4.61 86.31 0.40 1.15 16 5 N -0.45 -8.70 4.71 -704.89 -3.32 -12.02 16 6 C 0.34 9.01 6.76 260.02 1.76 10.77 16 7 N -0.34 -11.69 11.60 -57.89 -0.67 -12.37 16 8 N -0.33 -12.09 12.21 -50.78 -0.62 -12.71 16 9 C 0.29 9.31 7.91 136.31 1.08 10.39 16 10 C -0.20 -6.91 6.05 -20.38 -0.12 -7.03 16 11 C 0.06 1.94 10.80 85.55 0.92 2.86 16 12 N -0.31 -12.95 12.36 -56.36 -0.70 -13.65 16 13 N -0.34 -14.87 3.66 -350.76 -1.28 -16.15 16 14 C 0.27 13.36 6.25 85.63 0.54 13.89 16 15 C -0.55 -29.78 9.23 25.60 0.24 -29.55 16 16 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 17 C 0.02 0.93 5.46 84.66 0.46 1.39 16 18 N -0.92 -51.44 13.29 21.45 0.28 -51.16 16 19 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.10 3.93 11.40 83.86 0.96 4.89 16 24 N -0.46 -11.47 3.23 -539.86 -1.75 -13.22 16 25 C 0.07 0.93 9.84 127.77 1.26 2.19 16 26 C 0.02 0.36 5.58 86.31 0.48 0.84 16 27 C 0.07 0.81 7.01 72.02 0.50 1.32 16 28 O -0.40 -6.32 10.47 -148.98 -1.56 -7.88 16 29 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 32 H 0.05 1.07 7.96 -2.38 -0.02 1.05 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 34 H 0.22 4.58 6.24 -2.91 -0.02 4.56 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.06 2.76 8.07 -2.39 -0.02 2.74 16 37 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.19 6.53 8.06 -2.91 -0.02 6.50 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.11 1.10 8.11 -2.39 -0.02 1.08 16 41 H 0.10 1.31 6.51 -2.39 -0.02 1.30 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -71.40 376.91 2.67 -68.72 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.00 Total: 12.19 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 9.26 Total: 13.65 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -8.05 Total: -131.27 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.56 Total: -7.88 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.40 2.67 -68.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646660426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.362 kcal (2) G-P(sol) polarization free energy of solvation -71.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds