Wall clock time and date at job start Tue Mar 31 2020 17:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40194 * 125.96966 * 180.14766 * 4 3 2 6 6 C 1.34772 * 120.00476 * 0.28015 * 5 4 3 7 7 O 1.21590 * 119.99951 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00191 * 180.02562 * 6 5 4 9 9 C 1.46495 * 119.99901 * 359.97438 * 8 6 5 10 10 C 1.46500 * 120.00048 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.47222 * 89.99735 * 10 8 6 12 12 C 1.39862 * 125.89668 * 94.71388 * 11 10 8 13 13 C 1.35324 * 107.91792 * 179.86599 * 12 11 10 14 14 N 1.34948 * 107.74497 * 0.39411 * 13 12 11 15 15 C 1.46495 * 126.03647 * 179.75319 * 14 13 12 16 16 N 1.30841 * 125.89667 * 275.02858 * 11 10 8 17 17 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97468 * 359.94647 * 18 2 1 20 20 C 1.50702 * 109.47635 * 89.99791 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99972 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46844 * 60.00071 * 24 22 20 26 26 H 1.48494 * 109.46947 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47031 * 300.00020 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 32 32 H 0.97008 * 119.99571 * 180.28380 * 5 4 3 33 33 H 1.08996 * 109.47769 * 90.00131 * 9 8 6 34 34 H 1.09005 * 109.47253 * 210.00217 * 9 8 6 35 35 H 1.09002 * 109.46997 * 329.99863 * 9 8 6 36 36 H 1.08994 * 109.47128 * 210.00213 * 10 8 6 37 37 H 1.09001 * 109.46658 * 329.99591 * 10 8 6 38 38 H 1.08002 * 126.04653 * 359.97438 * 12 11 10 39 39 H 1.07998 * 126.12323 * 180.15429 * 13 12 11 40 40 H 1.09008 * 109.47102 * 269.97519 * 15 14 13 41 41 H 1.08996 * 109.47150 * 29.97338 * 15 14 13 42 42 H 1.08999 * 109.47103 * 149.97844 * 15 14 13 43 43 H 1.09001 * 109.47030 * 210.00125 * 19 18 2 44 44 H 1.09005 * 109.47259 * 329.99077 * 19 18 2 45 45 H 0.96997 * 120.00168 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0132 7 8 3.5278 3.3139 0.0163 8 7 5.7298 3.6047 0.0162 9 6 7.0663 3.0048 0.0119 10 6 5.5812 5.0621 0.0237 11 6 5.5315 5.5547 1.4470 12 6 6.6188 6.0248 2.1906 13 6 6.1650 6.3738 3.4167 14 7 4.8391 6.1249 3.4508 15 6 3.9486 6.3519 4.5916 16 7 4.4647 5.6110 2.2025 17 7 3.6337 -0.6575 -0.0044 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0124 20 6 1.6941 -2.9555 -1.4354 21 1 1.9094 -2.2838 -2.2532 22 6 1.2765 -4.2440 -1.6933 23 7 1.0148 -5.0622 -0.6974 24 14 1.0824 -4.8275 -3.4572 25 1 2.3876 -4.7262 -4.1585 26 1 0.6260 -6.2406 -3.4637 27 1 0.0802 -3.9799 -4.1515 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6587 1.0778 0.0029 33 1 7.3969 2.8611 -1.0167 34 1 7.7628 3.6653 0.5285 35 1 7.0337 2.0414 0.5209 36 1 6.4292 5.5165 -0.4887 37 1 4.6585 5.3358 -0.4880 38 1 7.6399 6.0982 1.8464 39 1 6.7584 6.7756 4.2247 40 1 3.9150 5.4551 5.2104 41 1 4.3220 7.1877 5.1833 42 1 2.9463 6.5816 4.2301 43 1 2.5851 -3.1070 0.4978 44 1 0.8919 -2.5584 0.5019 45 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650507040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:18 Heat of formation + Delta-G solvation = 147.250028 kcal Electronic energy + Delta-G solvation = -27857.033792 eV Core-core repulsion = 23914.288190 eV Total energy + Delta-G solvation = -3942.745602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38156 -40.67360 -39.60128 -35.91925 -34.76699 -33.60600 -33.15578 -31.33352 -30.74479 -30.32735 -28.90568 -26.98333 -26.49051 -26.23253 -25.21745 -22.94227 -21.33863 -21.30104 -19.94938 -19.63580 -19.02092 -17.51136 -17.17026 -16.63122 -16.46262 -15.89347 -15.57578 -15.38998 -14.75276 -14.50823 -14.32377 -14.09218 -13.99243 -13.77574 -13.35046 -13.03559 -12.93853 -12.90417 -12.63332 -12.50058 -12.41754 -12.22863 -12.04219 -11.97706 -11.56475 -11.33721 -11.03092 -10.78009 -10.67404 -10.38254 -10.18997 -9.89743 -9.60974 -9.46636 -9.41524 -8.87314 -8.76259 -8.60030 -7.81777 -7.30655 -6.20993 -4.28643 1.68180 2.21703 2.33572 2.74844 2.84196 3.20927 3.26477 3.29854 3.34603 3.58503 3.93756 4.18748 4.26882 4.35885 4.53216 4.73912 4.87776 4.89198 4.90428 5.12166 5.14660 5.24366 5.38345 5.44353 5.47285 5.50221 5.63181 5.80372 5.82746 6.03811 6.17703 6.19020 6.39113 6.43360 6.58056 6.69840 6.74219 6.80415 7.02171 7.08357 7.15922 7.59734 7.62726 7.72016 7.94251 7.99542 8.15555 8.71111 8.75019 8.82813 9.37456 10.85989 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.002383 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.874476 B =11744.810112 C =12379.936110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.287 4.287 4 C 0.283 3.717 5 N -0.644 5.644 6 C 0.714 3.286 7 O -0.551 6.551 8 N -0.626 5.626 9 C 0.077 3.923 10 C 0.216 3.784 11 C 0.048 3.952 12 C -0.265 4.265 13 C 0.046 3.954 14 N -0.378 5.378 15 C 0.101 3.899 16 N -0.257 5.257 17 N -0.326 5.326 18 N -0.320 5.320 19 C 0.260 3.740 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.893 5.893 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.404 0.596 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.146 0.854 39 H 0.171 0.829 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.770 23.348 8.044 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.318 4.318 4 C 0.030 3.970 5 N -0.296 5.296 6 C 0.414 3.586 7 O -0.424 6.424 8 N -0.365 5.365 9 C -0.067 4.067 10 C 0.091 3.909 11 C -0.120 4.120 12 C -0.295 4.295 13 C -0.100 4.100 14 N -0.160 5.160 15 C -0.040 4.040 16 N -0.079 5.079 17 N -0.157 5.157 18 N -0.102 5.102 19 C 0.142 3.858 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.531 5.531 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.178 0.822 32 H 0.241 0.759 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.164 0.836 39 H 0.188 0.812 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.226 22.159 8.303 25.779 hybrid contribution 1.061 0.124 -0.653 1.253 sum 11.288 22.283 7.650 26.124 Atomic orbital electron populations 1.20363 0.88040 1.03779 1.02415 1.21042 0.94835 0.87159 1.01101 1.21254 0.89720 0.99829 1.20990 1.18682 0.86653 0.89239 1.02466 1.41568 1.07547 1.03784 1.76670 1.15566 0.84477 0.80455 0.78091 1.90890 1.22991 1.73116 1.55452 1.46909 1.05119 1.05530 1.78946 1.21794 0.83814 0.99062 1.02011 1.19531 1.04513 0.77988 0.88853 1.22799 0.91189 1.00180 0.97849 1.21368 1.00182 1.13377 0.94532 1.22508 0.85489 1.02258 0.99717 1.48684 1.06702 1.49192 1.11454 1.21854 0.94780 1.02248 0.85156 1.77621 1.22766 1.17620 0.89924 1.77228 0.99939 1.08346 1.30138 1.48939 1.00904 1.07672 1.52719 1.19644 0.95886 0.71467 0.98798 1.21310 1.46699 0.97919 0.91448 0.91789 1.24928 0.94735 0.96050 0.98088 1.69912 1.45005 1.06982 1.31172 0.86418 0.78808 0.77612 0.83861 1.20004 1.20999 1.19922 0.91215 0.89991 0.90657 0.82222 0.75914 0.92094 0.90473 0.91509 0.88258 0.88070 0.83640 0.81183 0.90740 0.89601 0.89145 0.93113 0.92891 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.89 36.01 0.36 -1.23 16 2 C 0.09 2.00 6.93 -82.28 -0.57 1.43 16 3 C -0.29 -6.33 9.52 -39.83 -0.38 -6.71 16 4 C 0.28 6.17 8.11 -154.37 -1.25 4.91 16 5 N -0.64 -11.14 5.32 -15.51 -0.08 -11.23 16 6 C 0.71 11.86 8.25 -86.92 -0.72 11.15 16 7 O -0.55 -10.98 13.05 5.29 0.07 -10.91 16 8 N -0.63 -7.45 2.86 -188.75 -0.54 -7.99 16 9 C 0.08 0.60 10.20 59.84 0.61 1.21 16 10 C 0.22 2.28 5.97 -5.19 -0.03 2.25 16 11 C 0.05 0.57 6.80 -82.41 -0.56 0.01 16 12 C -0.26 -2.40 10.74 -40.01 -0.43 -2.83 16 13 C 0.05 0.39 11.49 -17.22 -0.20 0.19 16 14 N -0.38 -4.03 4.01 -68.16 -0.27 -4.30 16 15 C 0.10 0.68 11.47 59.84 0.69 1.36 16 16 N -0.26 -3.67 12.58 33.67 0.42 -3.25 16 17 N -0.33 -7.87 12.59 31.44 0.40 -7.48 16 18 N -0.32 -7.90 3.59 -58.32 -0.21 -8.11 16 19 C 0.26 6.85 5.81 -5.20 -0.03 6.82 16 20 C -0.54 -15.05 9.39 -34.44 -0.32 -15.37 16 21 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 24 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.57 7.71 -51.93 -0.40 1.17 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.16 3.51 5.91 -52.49 -0.31 3.20 16 32 H 0.40 5.78 6.56 -40.82 -0.27 5.51 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 35 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 36 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.10 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 45 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -37.34 385.13 -7.91 -45.25 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.28 Total: 5.62 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -2.93 Total: 4.90 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: 0.45 Total: -67.08 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.34 -7.91 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650507040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.504 kcal (2) G-P(sol) polarization free energy of solvation -37.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds