Wall clock time and date at job start Tue Mar 31 2020 17:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40194 * 125.96966 * 180.14766 * 4 3 2 6 6 C 1.34772 * 120.00476 * 0.28015 * 5 4 3 7 7 O 1.21590 * 119.99951 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00191 * 180.02562 * 6 5 4 9 9 C 1.46495 * 119.99901 * 359.97438 * 8 6 5 10 10 C 1.46500 * 120.00048 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.47222 * 89.99735 * 10 8 6 12 12 C 1.39862 * 125.89668 * 94.71388 * 11 10 8 13 13 C 1.35324 * 107.91792 * 179.86599 * 12 11 10 14 14 N 1.34948 * 107.74497 * 0.39411 * 13 12 11 15 15 C 1.46495 * 126.03647 * 179.75319 * 14 13 12 16 16 N 1.30841 * 125.89667 * 275.02858 * 11 10 8 17 17 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97468 * 359.94647 * 18 2 1 20 20 C 1.50702 * 109.47635 * 89.99791 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99972 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46844 * 60.00071 * 24 22 20 26 26 H 1.48494 * 109.46947 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47031 * 300.00020 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 32 32 H 0.97008 * 119.99571 * 180.28380 * 5 4 3 33 33 H 1.08996 * 109.47769 * 90.00131 * 9 8 6 34 34 H 1.09005 * 109.47253 * 210.00217 * 9 8 6 35 35 H 1.09002 * 109.46997 * 329.99863 * 9 8 6 36 36 H 1.08994 * 109.47128 * 210.00213 * 10 8 6 37 37 H 1.09001 * 109.46658 * 329.99591 * 10 8 6 38 38 H 1.08002 * 126.04653 * 359.97438 * 12 11 10 39 39 H 1.07998 * 126.12323 * 180.15429 * 13 12 11 40 40 H 1.09008 * 109.47102 * 269.97519 * 15 14 13 41 41 H 1.08996 * 109.47150 * 29.97338 * 15 14 13 42 42 H 1.08999 * 109.47103 * 149.97844 * 15 14 13 43 43 H 1.09001 * 109.47030 * 210.00125 * 19 18 2 44 44 H 1.09005 * 109.47259 * 329.99077 * 19 18 2 45 45 H 0.96997 * 120.00168 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0132 7 8 3.5278 3.3139 0.0163 8 7 5.7298 3.6047 0.0162 9 6 7.0663 3.0048 0.0119 10 6 5.5812 5.0621 0.0237 11 6 5.5315 5.5547 1.4470 12 6 6.6188 6.0248 2.1906 13 6 6.1650 6.3738 3.4167 14 7 4.8391 6.1249 3.4508 15 6 3.9486 6.3519 4.5916 16 7 4.4647 5.6110 2.2025 17 7 3.6337 -0.6575 -0.0044 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0124 20 6 1.6941 -2.9555 -1.4354 21 1 1.9094 -2.2838 -2.2532 22 6 1.2765 -4.2440 -1.6933 23 7 1.0148 -5.0622 -0.6974 24 14 1.0824 -4.8275 -3.4572 25 1 2.3876 -4.7262 -4.1585 26 1 0.6260 -6.2406 -3.4637 27 1 0.0802 -3.9799 -4.1515 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6587 1.0778 0.0029 33 1 7.3969 2.8611 -1.0167 34 1 7.7628 3.6653 0.5285 35 1 7.0337 2.0414 0.5209 36 1 6.4292 5.5165 -0.4887 37 1 4.6585 5.3358 -0.4880 38 1 7.6399 6.0982 1.8464 39 1 6.7584 6.7756 4.2247 40 1 3.9150 5.4551 5.2104 41 1 4.3220 7.1877 5.1833 42 1 2.9463 6.5816 4.2301 43 1 2.5851 -3.1070 0.4978 44 1 0.8919 -2.5584 0.5019 45 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650507040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:16 Heat of formation + Delta-G solvation = 122.278389 kcal Electronic energy + Delta-G solvation = -27858.116643 eV Core-core repulsion = 23914.288190 eV Total energy + Delta-G solvation = -3943.828454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.37102 -42.04425 -40.96301 -37.00676 -36.30145 -35.33746 -34.19763 -32.94560 -32.59711 -31.04391 -29.74997 -28.58089 -27.86960 -27.54935 -26.16472 -24.84689 -22.68997 -21.98601 -21.26787 -21.00829 -20.28549 -18.86083 -18.68875 -17.90845 -17.76438 -17.27258 -16.92044 -16.45263 -16.25704 -15.96855 -15.73133 -15.31783 -14.99667 -14.65101 -14.55709 -14.36602 -14.19713 -13.84125 -13.67508 -13.61119 -13.55849 -13.46332 -13.26689 -13.15422 -13.12593 -12.81273 -12.70424 -12.67308 -12.24036 -12.10933 -11.56948 -11.43282 -11.34565 -11.06644 -10.73126 -10.28075 -9.87092 -9.55531 -9.45201 -9.06389 -8.31975 -6.50153 0.86246 1.02951 1.20213 1.38334 1.40206 1.49095 1.62921 1.76090 1.80812 2.20577 2.36117 2.41163 2.93273 2.97207 3.64631 3.83481 3.94880 4.14301 4.18130 4.23613 4.26232 4.39802 4.46232 4.61445 4.66184 4.72752 4.75020 4.76848 4.82559 4.86799 4.89429 4.93039 4.98245 5.02279 5.14526 5.15540 5.23652 5.53910 5.54620 5.72397 5.75201 5.81587 5.97046 6.23502 6.27367 6.59407 6.65387 6.86843 7.09419 7.20701 7.42629 8.73579 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.002383 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.874476 B =11744.810112 C =12379.936110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.088 3.912 3 C -0.298 4.298 4 C 0.292 3.708 5 N -0.637 5.637 6 C 0.706 3.294 7 O -0.590 6.590 8 N -0.614 5.614 9 C 0.068 3.932 10 C 0.214 3.786 11 C 0.035 3.965 12 C -0.270 4.270 13 C 0.051 3.949 14 N -0.388 5.388 15 C 0.094 3.906 16 N -0.326 5.326 17 N -0.360 5.360 18 N -0.343 5.343 19 C 0.277 3.723 20 C -0.554 4.554 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.266 1.266 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.161 0.839 32 H 0.418 0.582 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.146 0.854 37 H 0.074 0.926 38 H 0.177 0.823 39 H 0.213 0.787 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.051 0.949 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 24.887 7.945 29.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.329 4.329 4 C 0.037 3.963 5 N -0.291 5.291 6 C 0.407 3.593 7 O -0.466 6.466 8 N -0.351 5.351 9 C -0.073 4.073 10 C 0.090 3.910 11 C -0.132 4.132 12 C -0.300 4.300 13 C -0.094 4.094 14 N -0.171 5.171 15 C -0.047 4.047 16 N -0.150 5.150 17 N -0.190 5.190 18 N -0.126 5.126 19 C 0.158 3.842 20 C -0.592 4.592 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.190 1.190 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.179 0.821 32 H 0.257 0.743 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.163 0.837 37 H 0.093 0.907 38 H 0.194 0.806 39 H 0.229 0.771 40 H 0.093 0.907 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.042 0.958 44 H 0.069 0.931 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.122 23.732 8.214 27.886 hybrid contribution 0.578 -0.198 -0.520 0.802 sum 12.700 23.534 7.694 27.827 Atomic orbital electron populations 1.20488 0.85377 1.04352 1.04024 1.21705 0.96616 0.86393 0.99520 1.21371 0.90121 0.99746 1.21658 1.18969 0.88097 0.88946 1.00269 1.41581 1.06978 1.03905 1.76607 1.15853 0.85302 0.80219 0.77914 1.90853 1.25031 1.73617 1.57125 1.46994 1.05280 1.05771 1.77073 1.22121 0.81954 0.99435 1.03807 1.19792 1.05238 0.77074 0.88943 1.23053 0.91799 1.00295 0.98085 1.21753 1.00863 1.12961 0.94377 1.23263 0.84769 1.00711 1.00702 1.48982 1.08106 1.48908 1.11084 1.22107 0.94314 1.03741 0.84494 1.77530 1.25065 1.20308 0.92130 1.77149 1.00076 1.09553 1.32269 1.48768 1.01621 1.07458 1.54751 1.19234 0.94838 0.72344 0.97808 1.21413 1.47670 0.98402 0.91733 0.93270 1.25740 0.93907 0.95828 1.02331 1.69995 1.45021 1.07421 1.33187 0.85408 0.78773 0.77682 0.78644 1.20023 1.19640 1.19048 0.88996 0.91227 0.88133 0.82135 0.74294 0.90075 0.87396 0.91838 0.83676 0.90731 0.80603 0.77063 0.90699 0.85808 0.90241 0.95765 0.93097 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.04 9.89 71.24 0.70 -2.34 16 2 C 0.09 3.99 6.93 41.39 0.29 4.28 16 3 C -0.30 -13.45 9.52 22.11 0.21 -13.24 16 4 C 0.29 13.02 8.11 133.31 1.08 14.10 16 5 N -0.64 -22.17 5.32 -321.24 -1.71 -23.88 16 6 C 0.71 23.60 8.25 179.06 1.48 25.07 16 7 O -0.59 -24.23 13.05 -4.00 -0.05 -24.28 16 8 N -0.61 -13.84 2.86 -869.32 -2.48 -16.32 16 9 C 0.07 0.88 10.20 127.77 1.30 2.19 16 10 C 0.21 4.25 5.97 85.63 0.51 4.76 16 11 C 0.03 0.79 6.80 43.10 0.29 1.08 16 12 C -0.27 -4.12 10.74 21.99 0.24 -3.88 16 13 C 0.05 0.72 11.49 83.54 0.96 1.68 16 14 N -0.39 -7.87 4.01 -369.57 -1.48 -9.35 16 15 C 0.09 1.17 11.47 127.77 1.47 2.64 16 16 N -0.33 -9.43 12.58 -47.39 -0.60 -10.03 16 17 N -0.36 -17.91 12.59 -54.44 -0.69 -18.60 16 18 N -0.34 -17.53 3.59 -338.44 -1.22 -18.75 16 19 C 0.28 15.15 5.81 85.63 0.50 15.64 16 20 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 21 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 22 C 0.02 1.28 5.46 84.66 0.46 1.74 16 23 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 24 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H 0.09 2.89 8.14 -2.39 -0.02 2.88 16 29 H 0.07 2.69 7.71 -2.39 -0.02 2.67 16 30 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.16 7.26 5.91 -2.91 -0.02 7.24 16 32 H 0.42 11.80 6.56 -92.70 -0.61 11.20 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.78 8.07 -2.38 -0.02 0.76 16 35 H 0.06 0.89 6.36 -2.39 -0.02 0.87 16 36 H 0.15 1.45 8.07 -2.39 -0.02 1.43 16 37 H 0.07 1.88 7.42 -2.39 -0.02 1.86 16 38 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.21 0.93 8.06 -2.91 -0.02 0.90 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 2.76 7.65 -2.38 -0.02 2.74 16 45 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -84.90 385.13 4.23 -80.67 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.41 Total: 25.06 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 9.73 Total: 22.07 kcal Atomic # 7 Polarization: -141.48 SS G_CDS: -7.89 Total: -149.37 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -84.90 4.23 -80.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650507040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.950 kcal (2) G-P(sol) polarization free energy of solvation -84.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds