Wall clock time and date at job start Tue Mar 31 2020 17:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38040 * 126.28690 * 2 1 4 4 C 1.47425 * 126.41934 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00093 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00436 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00376 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47473 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.39985 * 119.99736 * 179.97438 * 9 8 7 11 11 C 1.40420 * 125.97680 * 359.72210 * 10 9 8 12 12 C 1.35252 * 107.86150 * 179.82603 * 11 10 9 13 13 N 1.34962 * 107.86462 * 0.42877 * 12 11 10 14 14 C 1.46492 * 125.97762 * 179.72978 * 13 12 11 15 15 N 1.31224 * 125.97210 * 180.02562 * 10 9 8 16 16 C 1.41298 * 107.17096 * 180.24796 * 3 2 1 17 17 N 1.30446 * 108.01689 * 359.61356 * 16 3 2 18 18 N 1.34255 * 126.29527 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75319 * 359.95722 * 18 2 1 20 20 C 1.50697 * 109.47463 * 90.00340 * 19 18 2 21 21 H 1.08002 * 119.99694 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00205 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46774 * 89.99837 * 24 22 20 26 26 H 1.48491 * 109.47611 * 209.99876 * 24 22 20 27 27 H 1.48504 * 109.46938 * 330.00447 * 24 22 20 28 28 H 1.08997 * 109.47066 * 89.97943 * 1 2 3 29 29 H 1.09007 * 109.46670 * 209.97381 * 1 2 3 30 30 H 1.08999 * 109.47220 * 329.97398 * 1 2 3 31 31 H 0.97004 * 120.00228 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.47129 * 59.99747 * 7 6 4 33 33 H 1.08998 * 109.46845 * 300.00553 * 7 6 4 34 34 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 35 35 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 36 36 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 37 37 H 1.07997 * 126.07392 * 359.95617 * 11 10 9 38 38 H 1.08001 * 126.07126 * 180.13533 * 12 11 10 39 39 H 1.09000 * 109.47094 * 269.97692 * 14 13 12 40 40 H 1.09007 * 109.47260 * 29.97175 * 14 13 12 41 41 H 1.09002 * 109.47663 * 149.97262 * 14 13 12 42 42 H 1.07997 * 125.98883 * 179.73964 * 16 3 2 43 43 H 1.09003 * 109.47089 * 210.00516 * 19 18 2 44 44 H 1.08997 * 109.47072 * 329.99736 * 19 18 2 45 45 H 0.97000 * 120.00287 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5108 -0.0010 7 6 2.3642 4.9095 -0.0009 8 6 3.5898 5.8253 -0.0022 9 7 3.1542 7.2241 -0.0027 10 6 4.1037 8.2528 -0.0033 11 6 5.4982 8.0883 0.0021 12 6 6.0610 9.3181 -0.0045 13 7 5.0653 10.2292 -0.0041 14 6 5.2306 11.6847 -0.0044 15 7 3.8460 9.5395 -0.0034 16 6 3.6590 0.6500 -0.0058 17 7 3.6340 -0.6542 -0.0007 18 7 2.3017 -1.0821 -0.0005 19 6 1.8502 -2.4757 -0.0002 20 6 1.6946 -2.9537 -1.4209 21 1 1.9100 -2.2859 -2.2419 22 6 1.2762 -4.2431 -1.6725 23 7 1.0133 -5.0561 -0.6728 24 14 1.0826 -4.8353 -3.4336 25 1 2.3631 -5.4242 -3.9013 26 1 0.0131 -5.8636 -3.4954 27 1 0.7178 -3.6888 -4.3041 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 3.7461 3.2975 -0.0013 32 1 1.7659 5.1038 0.8892 33 1 1.7652 5.1035 -0.8907 34 1 4.1878 5.6310 -0.8926 35 1 4.1892 5.6314 0.8874 36 1 2.2080 7.4374 -0.0020 37 1 6.0274 7.1469 0.0081 38 1 7.1194 9.5331 -0.0047 39 1 5.2717 12.0460 1.0231 40 1 6.1559 11.9453 -0.5184 41 1 4.3873 12.1461 -0.5183 42 1 4.5448 1.2678 -0.0113 43 1 2.5852 -3.0957 0.5133 44 1 0.8919 -2.5471 0.5142 45 1 0.7193 -5.9633 -0.8499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654624606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:48 Heat of formation + Delta-G solvation = 117.845324 kcal Electronic energy + Delta-G solvation = -26497.183401 eV Core-core repulsion = 22553.162715 eV Total energy + Delta-G solvation = -3944.020686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28632 -40.79110 -38.91644 -36.73786 -34.53093 -33.87872 -32.57802 -32.03672 -31.15951 -30.41875 -28.93180 -27.18496 -26.61566 -25.95915 -23.68813 -23.01968 -21.93366 -21.16099 -20.60717 -19.80348 -19.00523 -17.57892 -17.17280 -16.77471 -16.16988 -16.00028 -15.64088 -15.55834 -15.15020 -14.68128 -14.60550 -14.45888 -14.07936 -13.89481 -13.77393 -13.22097 -13.16157 -13.07137 -12.78639 -12.59533 -12.44890 -12.13152 -12.04709 -11.97502 -11.76186 -11.47424 -11.12397 -10.88908 -10.74996 -10.51355 -10.37534 -10.19815 -9.93937 -9.45442 -9.04106 -8.98437 -8.71320 -8.59546 -7.94647 -7.92469 -6.33862 -4.41747 1.69853 2.06423 2.17621 2.78767 2.79809 2.94572 3.18356 3.24748 3.27045 3.36747 3.75995 3.90222 4.24240 4.32076 4.48055 4.51963 4.78193 4.84994 4.99834 5.02042 5.10287 5.11639 5.23220 5.26225 5.38237 5.47598 5.53524 5.67333 5.69963 5.77796 5.93326 6.06832 6.13002 6.39939 6.50225 6.58702 6.74830 6.79341 6.84936 6.90539 7.15221 7.34068 7.55690 7.67949 7.76739 7.78479 7.81015 8.36973 8.57087 8.63948 9.25280 10.74355 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.029601 B = 0.001662 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.676787 B =16845.107110 C =17029.306661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.606 3.394 5 O -0.554 6.554 6 N -0.733 5.733 7 C 0.115 3.885 8 C 0.130 3.870 9 N -0.718 5.718 10 C 0.342 3.658 11 C -0.306 4.306 12 C 0.076 3.924 13 N -0.381 5.381 14 C 0.108 3.892 15 N -0.356 5.356 16 C 0.058 3.942 17 N -0.295 5.295 18 N -0.314 5.314 19 C 0.251 3.749 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.406 0.594 37 H 0.145 0.855 38 H 0.173 0.827 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.176 0.824 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.108 27.564 2.700 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.029 3.971 3 C -0.349 4.349 4 C 0.397 3.603 5 O -0.433 6.433 6 N -0.386 5.386 7 C -0.010 4.010 8 C 0.005 3.995 9 N -0.360 5.360 10 C 0.083 3.917 11 C -0.339 4.339 12 C -0.071 4.071 13 N -0.163 5.163 14 C -0.034 4.034 15 N -0.188 5.188 16 C -0.129 4.129 17 N -0.115 5.115 18 N -0.091 5.091 19 C 0.134 3.866 20 C -0.579 4.579 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.241 0.759 37 H 0.163 0.837 38 H 0.190 0.810 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.193 0.807 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.146 27.199 2.760 28.527 hybrid contribution 0.436 -0.336 -0.950 1.098 sum 8.582 26.864 1.810 28.259 Atomic orbital electron populations 1.20577 0.86806 1.03795 1.03952 1.21479 0.94971 0.86539 0.94113 1.19627 0.93176 0.92339 1.29757 1.17273 0.84885 0.83834 0.74320 1.90703 1.16702 1.84410 1.51482 1.45476 1.10012 1.04844 1.78253 1.21226 0.95887 0.80719 1.03144 1.21319 0.96568 0.79599 1.02031 1.43340 1.06409 1.01464 1.84809 1.19162 0.89293 0.87920 0.95316 1.21087 0.92152 0.98393 1.22257 1.22402 0.95226 0.88990 1.00449 1.47982 1.03112 1.06076 1.59152 1.21761 1.03526 0.75016 1.03051 1.77441 1.03100 1.03189 1.35106 1.23726 0.96302 0.92637 1.00254 1.77138 0.98627 1.12282 1.23479 1.49370 1.02480 1.08314 1.48887 1.19857 0.96430 0.70897 0.99446 1.21249 1.47462 0.98168 0.91012 0.91647 1.24915 0.94414 0.95990 0.98289 1.69910 1.44501 1.07158 1.31123 0.86322 0.78090 0.78640 0.83473 1.20245 1.20784 1.19602 0.89812 0.90856 0.88815 0.76609 0.90979 0.90972 0.91529 0.91545 0.75906 0.83676 0.81019 0.91114 0.89682 0.89532 0.80698 0.92500 0.92535 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.01 0.34 -1.33 16 2 C 0.17 3.35 7.01 -81.60 -0.57 2.78 16 3 C -0.33 -5.94 6.13 -105.07 -0.64 -6.58 16 4 C 0.61 9.69 7.81 -12.52 -0.10 9.59 16 5 O -0.55 -10.33 14.84 5.27 0.08 -10.25 16 6 N -0.73 -8.21 5.55 -61.39 -0.34 -8.55 16 7 C 0.12 1.09 5.79 -4.04 -0.02 1.07 16 8 C 0.13 0.98 5.72 -4.04 -0.02 0.96 16 9 N -0.72 -6.46 5.77 -60.06 -0.35 -6.81 16 10 C 0.34 3.63 8.16 -154.55 -1.26 2.37 16 11 C -0.31 -2.69 10.11 -39.82 -0.40 -3.10 16 12 C 0.08 0.55 11.48 -17.24 -0.20 0.35 16 13 N -0.38 -3.25 4.01 -68.18 -0.27 -3.52 16 14 C 0.11 0.45 11.47 59.84 0.69 1.14 16 15 N -0.36 -4.12 12.59 31.41 0.40 -3.73 16 16 C 0.06 0.97 11.50 -16.98 -0.20 0.78 16 17 N -0.30 -6.24 12.50 30.86 0.39 -5.85 16 18 N -0.31 -7.02 3.56 -57.78 -0.21 -7.23 16 19 C 0.25 6.21 5.97 -5.20 -0.03 6.18 16 20 C -0.54 -14.51 9.39 -34.44 -0.32 -14.84 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 24 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.07 1.28 7.05 -51.93 -0.37 0.92 16 30 H 0.09 1.61 6.50 -51.93 -0.34 1.27 16 31 H 0.40 3.42 7.43 -40.82 -0.30 3.11 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.41 3.47 8.60 -40.82 -0.35 3.12 16 37 H 0.15 1.03 7.90 -52.49 -0.41 0.61 16 38 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.18 2.02 7.50 -52.49 -0.39 1.63 16 43 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.06 1.39 7.02 -51.93 -0.36 1.02 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -34.57 387.97 -7.89 -42.46 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.30 Total: 4.58 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.84 Total: 1.07 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.35 Total: -59.45 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.57 -7.89 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654624606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.303 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds