Wall clock time and date at job start Tue Mar 31 2020 17:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38040 * 126.28690 * 2 1 4 4 C 1.47425 * 126.41934 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00093 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00436 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00376 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47473 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.39985 * 119.99736 * 179.97438 * 9 8 7 11 11 C 1.40420 * 125.97680 * 359.72210 * 10 9 8 12 12 C 1.35252 * 107.86150 * 179.82603 * 11 10 9 13 13 N 1.34962 * 107.86462 * 0.42877 * 12 11 10 14 14 C 1.46492 * 125.97762 * 179.72978 * 13 12 11 15 15 N 1.31224 * 125.97210 * 180.02562 * 10 9 8 16 16 C 1.41298 * 107.17096 * 180.24796 * 3 2 1 17 17 N 1.30446 * 108.01689 * 359.61356 * 16 3 2 18 18 N 1.34255 * 126.29527 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75319 * 359.95722 * 18 2 1 20 20 C 1.50697 * 109.47463 * 90.00340 * 19 18 2 21 21 H 1.08002 * 119.99694 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00205 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46774 * 89.99837 * 24 22 20 26 26 H 1.48491 * 109.47611 * 209.99876 * 24 22 20 27 27 H 1.48504 * 109.46938 * 330.00447 * 24 22 20 28 28 H 1.08997 * 109.47066 * 89.97943 * 1 2 3 29 29 H 1.09007 * 109.46670 * 209.97381 * 1 2 3 30 30 H 1.08999 * 109.47220 * 329.97398 * 1 2 3 31 31 H 0.97004 * 120.00228 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.47129 * 59.99747 * 7 6 4 33 33 H 1.08998 * 109.46845 * 300.00553 * 7 6 4 34 34 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 35 35 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 36 36 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 37 37 H 1.07997 * 126.07392 * 359.95617 * 11 10 9 38 38 H 1.08001 * 126.07126 * 180.13533 * 12 11 10 39 39 H 1.09000 * 109.47094 * 269.97692 * 14 13 12 40 40 H 1.09007 * 109.47260 * 29.97175 * 14 13 12 41 41 H 1.09002 * 109.47663 * 149.97262 * 14 13 12 42 42 H 1.07997 * 125.98883 * 179.73964 * 16 3 2 43 43 H 1.09003 * 109.47089 * 210.00516 * 19 18 2 44 44 H 1.08997 * 109.47072 * 329.99736 * 19 18 2 45 45 H 0.97000 * 120.00287 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5108 -0.0010 7 6 2.3642 4.9095 -0.0009 8 6 3.5898 5.8253 -0.0022 9 7 3.1542 7.2241 -0.0027 10 6 4.1037 8.2528 -0.0033 11 6 5.4982 8.0883 0.0021 12 6 6.0610 9.3181 -0.0045 13 7 5.0653 10.2292 -0.0041 14 6 5.2306 11.6847 -0.0044 15 7 3.8460 9.5395 -0.0034 16 6 3.6590 0.6500 -0.0058 17 7 3.6340 -0.6542 -0.0007 18 7 2.3017 -1.0821 -0.0005 19 6 1.8502 -2.4757 -0.0002 20 6 1.6946 -2.9537 -1.4209 21 1 1.9100 -2.2859 -2.2419 22 6 1.2762 -4.2431 -1.6725 23 7 1.0133 -5.0561 -0.6728 24 14 1.0826 -4.8353 -3.4336 25 1 2.3631 -5.4242 -3.9013 26 1 0.0131 -5.8636 -3.4954 27 1 0.7178 -3.6888 -4.3041 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 3.7461 3.2975 -0.0013 32 1 1.7659 5.1038 0.8892 33 1 1.7652 5.1035 -0.8907 34 1 4.1878 5.6310 -0.8926 35 1 4.1892 5.6314 0.8874 36 1 2.2080 7.4374 -0.0020 37 1 6.0274 7.1469 0.0081 38 1 7.1194 9.5331 -0.0047 39 1 5.2717 12.0460 1.0231 40 1 6.1559 11.9453 -0.5184 41 1 4.3873 12.1461 -0.5183 42 1 4.5448 1.2678 -0.0113 43 1 2.5852 -3.0957 0.5133 44 1 0.8919 -2.5471 0.5142 45 1 0.7193 -5.9633 -0.8499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654624606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:47 Heat of formation + Delta-G solvation = 93.258312 kcal Electronic energy + Delta-G solvation = -26498.249574 eV Core-core repulsion = 22553.162715 eV Total energy + Delta-G solvation = -3945.086858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.28427 -41.87256 -40.14625 -37.51813 -35.82180 -35.42684 -33.84493 -33.12242 -32.68776 -31.04312 -29.99211 -28.78013 -27.97846 -26.54598 -25.37695 -24.06515 -23.12989 -21.78551 -21.45765 -20.97945 -20.46554 -18.85483 -18.45371 -18.13497 -17.05490 -16.79117 -16.76733 -16.50207 -16.32542 -16.14568 -15.92437 -15.44791 -15.19411 -15.02525 -14.57852 -14.41686 -14.24769 -14.05053 -13.77108 -13.71244 -13.66548 -13.55659 -13.13704 -13.07267 -12.96805 -12.82687 -12.69661 -12.66326 -12.30468 -11.84691 -11.70793 -11.39547 -11.09705 -10.83004 -10.75537 -10.24456 -10.11032 -9.60745 -9.41380 -8.56986 -8.37252 -6.53645 0.70220 1.14643 1.35271 1.37894 1.40430 1.47656 1.50560 1.70941 2.14415 2.24944 2.33468 2.57339 2.92635 2.95749 3.72386 3.76609 3.84190 3.93263 4.15789 4.16534 4.17735 4.26449 4.49086 4.53087 4.55393 4.64571 4.73449 4.77927 4.79922 4.82472 4.90136 4.93237 4.97313 5.00306 5.09912 5.19951 5.45461 5.49781 5.52576 5.71526 5.75757 6.06036 6.17422 6.35081 6.55561 6.62676 6.68983 6.88095 7.16563 7.17578 7.37855 8.70602 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.029601 B = 0.001662 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.676787 B =16845.107110 C =17029.306661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.144 3.856 3 C -0.330 4.330 4 C 0.607 3.393 5 O -0.584 6.584 6 N -0.710 5.710 7 C 0.120 3.880 8 C 0.142 3.858 9 N -0.721 5.721 10 C 0.323 3.677 11 C -0.329 4.329 12 C 0.085 3.915 13 N -0.387 5.387 14 C 0.100 3.900 15 N -0.403 5.403 16 C 0.082 3.918 17 N -0.337 5.337 18 N -0.339 5.339 19 C 0.267 3.733 20 C -0.556 4.556 21 H 0.052 0.948 22 C 0.025 3.975 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.416 0.584 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.404 0.596 37 H 0.160 0.840 38 H 0.213 0.787 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.231 0.769 43 H 0.032 0.968 44 H 0.050 0.950 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.118 29.516 1.977 31.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 C -0.346 4.346 4 C 0.396 3.604 5 O -0.465 6.465 6 N -0.363 5.363 7 C -0.004 4.004 8 C 0.018 3.982 9 N -0.364 5.364 10 C 0.066 3.934 11 C -0.361 4.361 12 C -0.062 4.062 13 N -0.170 5.170 14 C -0.041 4.041 15 N -0.237 5.237 16 C -0.105 4.105 17 N -0.156 5.156 18 N -0.116 5.116 19 C 0.148 3.852 20 C -0.594 4.594 21 H 0.070 0.930 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.239 0.761 37 H 0.177 0.823 38 H 0.230 0.770 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.247 0.753 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.189 29.191 2.046 30.985 hybrid contribution -0.117 -0.738 -0.679 1.010 sum 10.072 28.453 1.367 30.214 Atomic orbital electron populations 1.20548 0.86059 1.03994 1.03861 1.21963 0.95891 0.86861 0.94486 1.19917 0.93366 0.92877 1.28420 1.17072 0.84969 0.83820 0.74504 1.90695 1.18112 1.84695 1.53015 1.45234 1.10227 1.04724 1.76115 1.21235 0.96808 0.79796 1.02601 1.21232 0.95435 0.78470 1.03108 1.43402 1.06325 1.01775 1.84850 1.19490 0.90374 0.87962 0.95613 1.21391 0.91467 0.99822 1.23465 1.23065 0.96720 0.88261 0.98175 1.48340 1.02558 1.07509 1.58591 1.22075 1.04890 0.72989 1.04111 1.77324 1.05529 1.04091 1.36712 1.24569 0.97644 0.91551 0.96758 1.77093 0.98214 1.14571 1.25771 1.49092 1.03456 1.07703 1.51343 1.19356 0.95281 0.72440 0.98100 1.21406 1.47920 0.98502 0.91613 0.92967 1.25714 0.93804 0.95945 1.02217 1.69992 1.44862 1.07574 1.33028 0.85354 0.78342 0.78189 0.78627 1.19750 1.19662 1.19477 0.89998 0.91142 0.87997 0.74655 0.91464 0.91689 0.90476 0.90320 0.76130 0.82288 0.77010 0.90168 0.86492 0.90100 0.75269 0.95024 0.93237 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.18 9.57 71.24 0.68 -2.50 16 2 C 0.14 5.84 7.01 42.14 0.30 6.14 16 3 C -0.33 -11.34 6.13 -20.15 -0.12 -11.46 16 4 C 0.61 18.37 7.81 86.66 0.68 19.05 16 5 O -0.58 -21.28 14.84 -4.05 -0.06 -21.34 16 6 N -0.71 -13.98 5.55 -466.38 -2.59 -16.57 16 7 C 0.12 2.04 5.79 86.38 0.50 2.54 16 8 C 0.14 1.81 5.72 86.38 0.49 2.30 16 9 N -0.72 -12.23 5.77 -343.93 -1.98 -14.22 16 10 C 0.32 6.55 8.16 133.39 1.09 7.64 16 11 C -0.33 -5.09 10.11 22.11 0.22 -4.87 16 12 C 0.09 1.00 11.48 83.52 0.96 1.96 16 13 N -0.39 -5.96 4.01 -369.61 -1.48 -7.44 16 14 C 0.10 0.64 11.47 127.77 1.46 2.10 16 15 N -0.40 -9.15 12.59 -54.55 -0.69 -9.83 16 16 C 0.08 2.56 11.50 85.65 0.99 3.54 16 17 N -0.34 -14.11 12.50 -56.27 -0.70 -14.82 16 18 N -0.34 -15.49 3.56 -336.71 -1.20 -16.69 16 19 C 0.27 13.75 5.97 85.63 0.51 14.27 16 20 C -0.56 -30.62 9.39 25.60 0.24 -30.38 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.02 1.33 5.46 84.65 0.46 1.79 16 23 N -0.92 -51.23 13.29 21.44 0.28 -50.95 16 24 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H 0.08 2.99 8.14 -2.39 -0.02 2.98 16 29 H 0.07 2.57 7.05 -2.38 -0.02 2.55 16 30 H 0.10 3.54 6.50 -2.39 -0.02 3.52 16 31 H 0.42 5.46 7.43 -92.71 -0.69 4.77 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.40 6.80 8.60 -92.71 -0.80 6.00 16 37 H 0.16 1.82 7.90 -2.91 -0.02 1.79 16 38 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 39 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.12 -0.03 8.14 -2.38 -0.02 -0.04 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 42 H 0.23 4.25 7.50 -2.91 -0.02 4.23 16 43 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 2.56 7.02 -2.39 -0.02 2.54 16 45 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -77.31 387.97 1.62 -75.69 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.45 Total: 19.42 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 8.46 Total: 12.11 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -8.36 Total: -130.52 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -77.31 1.62 -75.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654624606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.949 kcal (2) G-P(sol) polarization free energy of solvation -77.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds