Wall clock time and date at job start Tue Mar 31 2020 18:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 N 1.46496 * 109.46786 * 120.00108 * 2 1 3 5 5 C 1.36936 * 120.00308 * 302.23561 * 4 2 1 6 6 H 1.07994 * 120.00120 * 321.91328 * 5 4 2 7 7 C 1.38813 * 120.00223 * 141.91166 * 5 4 2 8 8 N 1.31622 * 119.99550 * 338.46517 * 7 5 4 9 9 Si 1.86795 * 120.00167 * 158.46663 * 7 5 4 10 10 H 1.48494 * 109.47545 * 59.99830 * 9 7 5 11 11 H 1.48500 * 109.47483 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46944 * 299.99912 * 9 7 5 13 13 C 1.46507 * 120.00111 * 122.23627 * 4 2 1 14 14 C 1.53003 * 109.47145 * 89.99825 * 13 4 2 15 15 C 1.52999 * 109.47439 * 180.02562 * 14 13 4 16 16 N 1.46493 * 109.47333 * 180.02562 * 15 14 13 17 17 C 1.34773 * 120.00204 * 180.27161 * 16 15 14 18 18 O 1.21551 * 119.99997 * 359.72552 * 17 16 15 19 19 C 1.47873 * 120.00323 * 179.72620 * 17 16 15 20 20 C 1.39457 * 121.11329 * 359.71568 * 19 17 16 21 21 C 1.38619 * 119.37166 * 179.73812 * 20 19 17 22 22 N 1.31575 * 121.63963 * 0.58170 * 21 20 19 23 23 C 1.32216 * 121.86820 * 359.69577 * 22 21 20 24 24 N 1.37209 * 134.67873 * 180.02562 * 23 22 21 25 25 H 0.97007 * 125.86479 * 359.97438 * 24 23 22 26 26 N 1.28781 * 108.26589 * 179.97438 * 24 23 22 27 27 N 1.28691 * 111.75496 * 359.97438 * 26 24 23 28 28 C 1.34397 * 109.15607 * 0.02562 * 27 26 24 29 29 H 1.09000 * 109.46854 * 305.40505 * 1 2 3 30 30 H 1.09000 * 109.46509 * 65.40359 * 1 2 3 31 31 H 1.09000 * 109.47288 * 185.39773 * 1 2 3 32 32 H 1.09001 * 109.47194 * 239.99689 * 2 1 3 33 33 H 1.08996 * 109.47388 * 180.43346 * 3 2 1 34 34 H 1.09000 * 109.47114 * 300.43860 * 3 2 1 35 35 H 1.09002 * 109.47022 * 60.43562 * 3 2 1 36 36 H 0.97006 * 119.99570 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47136 * 330.00180 * 13 4 2 38 38 H 1.08995 * 109.47230 * 209.99738 * 13 4 2 39 39 H 1.09003 * 109.47085 * 59.99764 * 14 13 4 40 40 H 1.09002 * 109.47224 * 300.00397 * 14 13 4 41 41 H 1.08993 * 109.46918 * 59.99776 * 15 14 13 42 42 H 1.09002 * 109.46967 * 300.00224 * 15 14 13 43 43 H 0.96999 * 120.00196 * 0.02562 * 16 15 14 44 44 H 1.08000 * 120.31097 * 0.02562 * 20 19 17 45 45 H 1.08006 * 119.17917 * 180.27809 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6501 -0.2502 2.4394 6 1 1.5674 0.8088 2.6345 7 6 1.3831 -1.1648 3.4489 8 7 1.0659 -2.4057 3.1455 9 14 1.4739 -0.6345 5.2377 10 1 0.5007 0.4608 5.4794 11 1 1.1483 -1.7888 6.1134 12 1 2.8456 -0.1540 5.5425 13 6 2.9005 -1.8526 1.0623 14 6 4.3580 -1.3874 1.0483 15 6 5.2794 -2.6008 0.9079 16 7 6.6749 -2.1554 0.8951 17 6 7.6691 -3.0572 0.7737 18 8 7.4079 -4.2407 0.6799 19 6 9.0775 -2.6072 0.7546 20 6 9.4033 -1.2549 0.8547 21 6 10.7359 -0.8736 0.8385 22 7 11.7048 -1.7557 0.7195 23 6 11.4607 -3.0510 0.6151 24 7 12.2405 -4.1722 0.4833 25 1 13.2095 -4.1887 0.4410 26 7 11.4651 -5.1987 0.4254 27 7 10.2249 -4.8649 0.5077 28 6 10.1348 -3.5295 0.6291 29 1 -0.3633 0.5954 0.8376 30 1 -0.3632 0.4278 -0.9344 31 1 -0.3634 -1.0231 0.0967 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0078 34 1 1.6704 1.9585 -0.8860 35 1 1.6832 1.9540 0.8939 36 1 0.8797 -3.0449 3.8510 37 1 2.6765 -2.3736 0.1315 38 1 2.7426 -2.5274 1.9036 39 1 4.5821 -0.8663 1.9791 40 1 4.5159 -0.7125 0.2071 41 1 5.0552 -3.1214 -0.0230 42 1 5.1216 -3.2760 1.7489 43 1 6.8834 -1.2111 0.9703 44 1 8.6249 -0.5122 0.9487 45 1 10.9849 0.1742 0.9208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664521615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:10 Heat of formation + Delta-G solvation = 109.719122 kcal Electronic energy + Delta-G solvation = -27716.226096 eV Core-core repulsion = 23771.853032 eV Total energy + Delta-G solvation = -3944.373064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.75740 -40.12340 -38.87293 -36.80038 -35.13098 -34.52564 -32.78868 -32.31865 -31.32126 -31.13814 -28.82028 -26.25492 -26.18523 -25.12271 -24.26227 -23.69774 -22.76059 -21.14957 -20.85204 -19.53873 -19.07202 -18.81212 -17.71628 -16.96731 -16.43146 -15.87356 -15.61013 -15.47249 -15.08999 -14.91146 -14.22960 -14.12666 -13.78455 -13.65096 -13.34209 -13.24301 -12.83738 -12.66018 -12.44970 -12.01426 -11.94399 -11.67969 -11.51957 -11.45076 -11.31793 -10.97932 -10.76618 -10.66591 -10.49703 -10.42318 -10.19487 -9.95471 -9.77769 -9.70775 -9.60178 -9.50416 -9.47501 -8.93182 -8.46425 -6.54708 -5.77945 -3.36041 -0.32692 0.45208 1.75824 1.85280 2.61688 2.92220 3.35484 3.35720 3.40723 3.42926 3.43629 3.83946 4.04118 4.16836 4.36411 4.47291 4.73568 5.04918 5.08040 5.21009 5.30851 5.36675 5.62734 5.73257 5.77405 5.93840 5.99976 6.16645 6.19539 6.28491 6.34913 6.37944 6.43189 6.64417 6.70256 6.71348 6.79114 6.80129 7.05048 7.09691 7.19744 7.34715 7.47277 7.66843 7.81372 7.84618 8.14781 8.54233 9.20888 9.83343 10.42690 11.22189 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.002428 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.134891 B =11527.030935 C =11907.127576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.162 3.838 3 C -0.153 4.153 4 N -0.579 5.579 5 C -0.255 4.255 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.152 3.848 14 C -0.146 4.146 15 C 0.120 3.880 16 N -0.714 5.714 17 C 0.544 3.456 18 O -0.501 6.501 19 C -0.003 4.003 20 C -0.143 4.143 21 C 0.163 3.837 22 N -0.461 5.461 23 C 0.214 3.786 24 N -0.407 5.407 25 H 0.457 0.543 26 N 0.001 4.999 27 N -0.207 5.207 28 C 0.002 3.998 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.255 0.745 37 H 0.025 0.975 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.398 0.602 44 H 0.160 0.840 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.101 4.723 -6.464 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.212 4.212 4 N -0.299 5.299 5 C -0.385 4.385 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.025 3.975 14 C -0.186 4.186 15 C -0.003 4.003 16 N -0.367 5.367 17 C 0.328 3.672 18 O -0.375 6.375 19 C -0.020 4.020 20 C -0.167 4.167 21 C -0.009 4.009 22 N -0.175 5.175 23 C -0.030 4.030 24 N -0.137 5.137 25 H 0.305 0.695 26 N 0.018 4.982 27 N -0.083 5.083 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.233 0.767 44 H 0.178 0.822 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 20.529 2.304 -6.581 21.681 hybrid contribution 0.142 1.598 1.165 1.983 sum 20.671 3.902 -5.416 21.722 Atomic orbital electron populations 1.22061 0.97893 1.01588 0.98924 1.20414 0.92465 0.91772 0.89831 1.22178 1.00027 0.99013 1.00026 1.43832 1.51730 1.33260 1.01060 1.18838 1.41751 0.91229 0.86661 0.92365 1.25177 0.98463 0.96432 0.98603 1.69994 1.46712 1.04184 1.31797 0.86546 0.78116 0.77605 0.85531 1.20842 1.21695 1.21006 1.20779 0.84875 0.90853 1.01012 1.22522 0.98777 0.95809 1.01541 1.21576 0.77703 0.98650 1.02327 1.46080 1.07104 1.09898 1.73587 1.17904 0.84034 0.86518 0.78786 1.90889 1.83618 1.15926 1.47106 1.19814 0.93162 0.91788 0.97195 1.22466 0.99119 0.94906 1.00164 1.22861 0.87061 0.98801 0.92204 1.66325 1.38292 0.98733 1.14147 1.19875 0.88825 0.89508 1.04763 1.44714 1.11445 1.02326 1.55195 0.69450 1.78283 0.96727 1.11111 1.12051 1.75610 1.07189 1.10310 1.15163 1.20149 0.93264 0.92505 1.06817 0.92784 0.95309 0.92996 0.93714 0.93903 0.94619 0.92788 0.93517 0.95635 0.88773 0.91532 0.93139 0.91553 0.91066 0.76705 0.82211 0.79938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.03 37.16 0.34 -2.54 16 2 C 0.16 3.20 3.36 -67.93 -0.23 2.97 16 3 C -0.15 -2.65 9.20 37.15 0.34 -2.31 16 4 N -0.58 -13.16 2.36 -165.66 -0.39 -13.56 16 5 C -0.25 -6.44 8.23 -15.06 -0.12 -6.57 16 6 H 0.06 1.49 6.95 -52.49 -0.36 1.12 16 7 C 0.01 0.36 4.94 -17.43 -0.09 0.28 16 8 N -0.88 -24.47 11.52 55.49 0.64 -23.83 16 9 Si 0.89 20.80 29.61 -169.99 -5.03 15.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.15 3.24 5.27 -4.04 -0.02 3.22 16 14 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 15 C 0.12 1.88 5.67 -4.05 -0.02 1.86 16 16 N -0.71 -9.14 5.51 -61.25 -0.34 -9.48 16 17 C 0.54 7.99 7.79 -12.32 -0.10 7.89 16 18 O -0.50 -9.59 16.27 5.32 0.09 -9.50 16 19 C 0.00 -0.04 5.92 -104.51 -0.62 -0.66 16 20 C -0.14 -1.03 9.61 -38.99 -0.37 -1.41 16 21 C 0.16 1.03 11.14 -17.52 -0.20 0.83 16 22 N -0.46 -4.10 10.35 -12.38 -0.13 -4.23 16 23 C 0.21 2.28 8.56 -156.20 -1.34 0.94 16 24 N -0.41 -3.61 7.06 31.11 0.22 -3.39 16 25 H 0.46 2.04 8.96 -190.25 -1.71 0.33 16 26 N 0.00 0.02 13.29 60.35 0.80 0.82 16 27 N -0.21 -3.15 11.92 32.23 0.38 -2.77 16 28 C 0.00 0.02 6.97 -84.72 -0.59 -0.57 16 29 H 0.05 1.13 7.80 -51.93 -0.40 0.73 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.84 7.78 -51.93 -0.40 0.43 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 1.00 7.06 -51.93 -0.37 0.64 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 37 H 0.03 0.53 7.90 -51.93 -0.41 0.12 16 38 H 0.09 2.33 5.56 -51.93 -0.29 2.04 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.40 3.73 6.62 -40.82 -0.27 3.46 16 44 H 0.16 0.63 6.53 -52.49 -0.34 0.29 16 45 H 0.18 0.38 8.06 -52.48 -0.42 -0.05 16 LS Contribution 377.24 15.07 5.69 5.69 Total: -1.00 -33.79 377.24 -8.74 -42.53 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.50 Total: 0.62 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.17 Total: 1.32 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 1.19 Total: -56.43 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.79 -8.74 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664521615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.247 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds