Wall clock time and date at job start Tue Mar 31 2020 18:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 N 1.46496 * 109.46786 * 120.00108 * 2 1 3 5 5 C 1.36936 * 120.00308 * 302.23561 * 4 2 1 6 6 H 1.07994 * 120.00120 * 321.91328 * 5 4 2 7 7 C 1.38813 * 120.00223 * 141.91166 * 5 4 2 8 8 N 1.31622 * 119.99550 * 338.46517 * 7 5 4 9 9 Si 1.86795 * 120.00167 * 158.46663 * 7 5 4 10 10 H 1.48494 * 109.47545 * 59.99830 * 9 7 5 11 11 H 1.48500 * 109.47483 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46944 * 299.99912 * 9 7 5 13 13 C 1.46507 * 120.00111 * 122.23627 * 4 2 1 14 14 C 1.53003 * 109.47145 * 89.99825 * 13 4 2 15 15 C 1.52999 * 109.47439 * 180.02562 * 14 13 4 16 16 N 1.46493 * 109.47333 * 180.02562 * 15 14 13 17 17 C 1.34773 * 120.00204 * 180.27161 * 16 15 14 18 18 O 1.21551 * 119.99997 * 359.72552 * 17 16 15 19 19 C 1.47873 * 120.00323 * 179.72620 * 17 16 15 20 20 C 1.39457 * 121.11329 * 359.71568 * 19 17 16 21 21 C 1.38619 * 119.37166 * 179.73812 * 20 19 17 22 22 N 1.31575 * 121.63963 * 0.58170 * 21 20 19 23 23 C 1.32216 * 121.86820 * 359.69577 * 22 21 20 24 24 N 1.37209 * 134.67873 * 180.02562 * 23 22 21 25 25 H 0.97007 * 125.86479 * 359.97438 * 24 23 22 26 26 N 1.28781 * 108.26589 * 179.97438 * 24 23 22 27 27 N 1.28691 * 111.75496 * 359.97438 * 26 24 23 28 28 C 1.34397 * 109.15607 * 0.02562 * 27 26 24 29 29 H 1.09000 * 109.46854 * 305.40505 * 1 2 3 30 30 H 1.09000 * 109.46509 * 65.40359 * 1 2 3 31 31 H 1.09000 * 109.47288 * 185.39773 * 1 2 3 32 32 H 1.09001 * 109.47194 * 239.99689 * 2 1 3 33 33 H 1.08996 * 109.47388 * 180.43346 * 3 2 1 34 34 H 1.09000 * 109.47114 * 300.43860 * 3 2 1 35 35 H 1.09002 * 109.47022 * 60.43562 * 3 2 1 36 36 H 0.97006 * 119.99570 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47136 * 330.00180 * 13 4 2 38 38 H 1.08995 * 109.47230 * 209.99738 * 13 4 2 39 39 H 1.09003 * 109.47085 * 59.99764 * 14 13 4 40 40 H 1.09002 * 109.47224 * 300.00397 * 14 13 4 41 41 H 1.08993 * 109.46918 * 59.99776 * 15 14 13 42 42 H 1.09002 * 109.46967 * 300.00224 * 15 14 13 43 43 H 0.96999 * 120.00196 * 0.02562 * 16 15 14 44 44 H 1.08000 * 120.31097 * 0.02562 * 20 19 17 45 45 H 1.08006 * 119.17917 * 180.27809 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6501 -0.2502 2.4394 6 1 1.5674 0.8088 2.6345 7 6 1.3831 -1.1648 3.4489 8 7 1.0659 -2.4057 3.1455 9 14 1.4739 -0.6345 5.2377 10 1 0.5007 0.4608 5.4794 11 1 1.1483 -1.7888 6.1134 12 1 2.8456 -0.1540 5.5425 13 6 2.9005 -1.8526 1.0623 14 6 4.3580 -1.3874 1.0483 15 6 5.2794 -2.6008 0.9079 16 7 6.6749 -2.1554 0.8951 17 6 7.6691 -3.0572 0.7737 18 8 7.4079 -4.2407 0.6799 19 6 9.0775 -2.6072 0.7546 20 6 9.4033 -1.2549 0.8547 21 6 10.7359 -0.8736 0.8385 22 7 11.7048 -1.7557 0.7195 23 6 11.4607 -3.0510 0.6151 24 7 12.2405 -4.1722 0.4833 25 1 13.2095 -4.1887 0.4410 26 7 11.4651 -5.1987 0.4254 27 7 10.2249 -4.8649 0.5077 28 6 10.1348 -3.5295 0.6291 29 1 -0.3633 0.5954 0.8376 30 1 -0.3632 0.4278 -0.9344 31 1 -0.3634 -1.0231 0.0967 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0078 34 1 1.6704 1.9585 -0.8860 35 1 1.6832 1.9540 0.8939 36 1 0.8797 -3.0449 3.8510 37 1 2.6765 -2.3736 0.1315 38 1 2.7426 -2.5274 1.9036 39 1 4.5821 -0.8663 1.9791 40 1 4.5159 -0.7125 0.2071 41 1 5.0552 -3.1214 -0.0230 42 1 5.1216 -3.2760 1.7489 43 1 6.8834 -1.2111 0.9703 44 1 8.6249 -0.5122 0.9487 45 1 10.9849 0.1742 0.9208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664521615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:09 Heat of formation + Delta-G solvation = 85.122723 kcal Electronic energy + Delta-G solvation = -27717.292676 eV Core-core repulsion = 23771.853032 eV Total energy + Delta-G solvation = -3945.439644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.55700 -41.11135 -39.74553 -38.45537 -36.43791 -35.36710 -34.26477 -33.66386 -32.60559 -31.91449 -30.42048 -27.68538 -27.48001 -26.44011 -25.04992 -24.97403 -23.90757 -22.39622 -22.05778 -21.24942 -19.98005 -19.64151 -18.56715 -18.12592 -17.78499 -17.01687 -16.90135 -16.56995 -16.50134 -15.95703 -15.71221 -15.59698 -14.98112 -14.86645 -14.50138 -14.31357 -14.02150 -13.95153 -13.52636 -13.30538 -13.21497 -13.10949 -12.81460 -12.79342 -12.74795 -12.62343 -12.45917 -12.30948 -12.11141 -11.88944 -11.66115 -11.48024 -11.26238 -11.16848 -10.67068 -10.44640 -10.41258 -10.32524 -10.07877 -8.43542 -7.72278 -5.33874 -1.10229 -0.21955 0.95512 1.10282 1.49230 1.52230 1.57353 1.71190 1.88477 2.52355 2.56968 2.68027 3.12441 3.30201 3.33339 3.39880 3.66034 3.72053 4.11357 4.23415 4.25762 4.33410 4.41428 4.42344 4.56902 4.69485 4.71191 4.78670 4.86072 4.99499 5.01808 5.15919 5.18183 5.21805 5.25792 5.28467 5.38569 5.55637 5.63652 5.67619 5.73240 5.81010 5.95122 6.39719 6.45135 6.58214 6.98006 7.10493 7.28993 7.99812 8.52246 9.22847 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.002428 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.134891 B =11527.030935 C =11907.127576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.152 3.848 3 C -0.141 4.141 4 N -0.592 5.592 5 C -0.244 4.244 6 H 0.058 0.942 7 C -0.037 4.037 8 N -0.919 5.919 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.303 1.303 12 H -0.276 1.276 13 C 0.150 3.850 14 C -0.121 4.121 15 C 0.133 3.867 16 N -0.697 5.697 17 C 0.544 3.456 18 O -0.559 6.559 19 C -0.039 4.039 20 C -0.106 4.106 21 C 0.178 3.822 22 N -0.461 5.461 23 C 0.209 3.791 24 N -0.382 5.382 25 H 0.475 0.525 26 N -0.012 5.012 27 N -0.264 5.264 28 C -0.028 4.028 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.246 0.754 37 H 0.024 0.976 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.418 0.582 44 H 0.201 0.799 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.220 8.889 -7.275 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.313 5.313 5 C -0.374 4.374 6 H 0.075 0.925 7 C -0.234 4.234 8 N -0.563 5.563 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.230 1.230 12 H -0.202 1.202 13 C 0.023 3.977 14 C -0.161 4.161 15 C 0.008 3.992 16 N -0.351 5.351 17 C 0.330 3.670 18 O -0.437 6.437 19 C -0.055 4.055 20 C -0.130 4.130 21 C 0.005 3.995 22 N -0.175 5.175 23 C -0.035 4.035 24 N -0.115 5.115 25 H 0.327 0.673 26 N 0.005 4.995 27 N -0.139 5.139 28 C -0.158 4.158 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.257 0.743 44 H 0.218 0.782 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 22.699 6.508 -7.408 24.749 hybrid contribution -0.491 0.459 1.339 1.498 sum 22.208 6.967 -6.070 24.054 Atomic orbital electron populations 1.21990 0.98192 0.99554 1.00005 1.20670 0.92319 0.93347 0.89053 1.22019 1.00633 0.96756 1.00587 1.44067 1.52458 1.33447 1.01375 1.19006 1.39681 0.91026 0.87717 0.92485 1.25775 0.99393 0.96588 1.01668 1.70141 1.48992 1.05123 1.32057 0.85693 0.78320 0.76706 0.81841 1.20411 1.22956 1.20168 1.20679 0.87506 0.90212 0.99328 1.22131 0.95756 0.96067 1.02114 1.21209 0.79263 0.97675 1.01012 1.45765 1.05562 1.10819 1.72939 1.18367 0.85448 0.85819 0.77323 1.90858 1.84646 1.18386 1.49786 1.19685 0.90870 0.93671 1.01266 1.23010 1.00906 0.93254 0.95787 1.23875 0.85981 1.00512 0.89087 1.66522 1.39124 0.97793 1.14099 1.19952 0.87880 0.90324 1.05301 1.44707 1.12132 1.01544 1.53137 0.67325 1.78167 0.96505 1.12028 1.12751 1.75529 1.08485 1.12221 1.17619 1.20513 0.95097 0.92189 1.07989 0.94608 0.91777 0.96005 0.92347 0.92839 0.91729 0.94455 0.94459 0.95735 0.92547 0.92245 0.90638 0.92074 0.93741 0.74322 0.78246 0.74501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 9.03 71.98 0.65 -4.66 16 2 C 0.15 5.71 3.36 44.99 0.15 5.86 16 3 C -0.14 -4.40 9.20 71.98 0.66 -3.74 16 4 N -0.59 -26.63 2.36 -678.04 -1.60 -28.23 16 5 C -0.24 -12.26 8.23 84.03 0.69 -11.56 16 6 H 0.06 2.87 6.95 -2.91 -0.02 2.85 16 7 C -0.04 -1.98 4.94 84.86 0.42 -1.56 16 8 N -0.92 -52.63 11.52 21.65 0.25 -52.38 16 9 Si 0.95 43.22 29.61 68.60 2.03 45.25 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.15 6.43 5.27 86.38 0.46 6.89 16 14 C -0.12 -3.91 5.65 30.59 0.17 -3.74 16 15 C 0.13 4.14 5.67 86.38 0.49 4.63 16 16 N -0.70 -16.88 5.51 -465.97 -2.57 -19.45 16 17 C 0.54 16.04 7.79 86.80 0.68 16.72 16 18 O -0.56 -22.62 16.27 -3.88 -0.06 -22.68 16 19 C -0.04 -0.88 5.92 -19.79 -0.12 -0.99 16 20 C -0.11 -1.07 9.61 22.65 0.22 -0.86 16 21 C 0.18 1.29 11.14 84.82 0.94 2.24 16 22 N -0.46 -6.57 10.35 -193.09 -2.00 -8.57 16 23 C 0.21 4.15 8.56 134.17 1.15 5.30 16 24 N -0.38 -6.60 7.06 -55.47 -0.39 -6.99 16 25 H 0.47 3.74 8.96 -219.82 -1.97 1.77 16 26 N -0.01 -0.30 13.29 37.02 0.49 0.19 16 27 N -0.26 -8.50 11.92 -51.93 -0.62 -9.12 16 28 C -0.03 -0.74 6.97 40.06 0.28 -0.46 16 29 H 0.03 1.47 7.80 -2.39 -0.02 1.45 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.06 2.04 7.78 -2.39 -0.02 2.02 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.28 7.06 -2.39 -0.02 1.26 16 36 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 37 H 0.02 1.02 7.90 -2.39 -0.02 1.01 16 38 H 0.06 2.91 5.56 -2.39 -0.01 2.90 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.42 6.38 6.62 -92.71 -0.61 5.76 16 44 H 0.20 0.31 6.53 -2.91 -0.02 0.29 16 45 H 0.24 -0.87 8.06 -2.91 -0.02 -0.89 16 Total: -1.00 -80.16 377.24 0.83 -79.33 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -1.54 Total: 8.58 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 6.84 Total: 14.07 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -6.44 Total: -124.54 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -80.16 0.83 -79.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664521615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.450 kcal (2) G-P(sol) polarization free energy of solvation -80.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds