Wall clock time and date at job start Tue Mar 31 2020 17:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40170 * 119.82177 * 2 1 4 4 C 1.35682 * 119.27246 * 179.76436 * 3 2 1 5 5 C 1.50701 * 120.48490 * 180.24506 * 4 3 2 6 6 N 1.36161 * 119.02717 * 0.50717 * 4 3 2 7 7 N 1.40103 * 133.22542 * 179.76474 * 6 4 3 8 8 C 1.31980 * 106.92685 * 179.97438 * 7 6 4 9 9 C 1.48133 * 125.32403 * 180.02562 * 8 7 6 10 10 O 1.21521 * 120.00016 * 352.77852 * 9 8 7 11 11 N 1.34773 * 119.99930 * 172.77846 * 9 8 7 12 12 C 1.46504 * 120.00228 * 3.35997 * 11 9 8 13 13 C 1.46501 * 120.00121 * 183.35470 * 11 9 8 14 14 C 1.52997 * 109.46952 * 90.00055 * 13 11 9 15 15 N 1.46499 * 109.47413 * 180.02562 * 14 13 11 16 16 C 1.46498 * 120.00150 * 89.99568 * 15 14 13 17 17 C 1.36942 * 120.00137 * 270.00706 * 15 14 13 18 18 H 1.07998 * 119.99911 * 32.08883 * 17 15 14 19 19 C 1.38814 * 119.99868 * 212.10232 * 17 15 14 20 20 N 1.31618 * 120.00026 * 6.39874 * 19 17 15 21 21 Si 1.86795 * 119.99888 * 186.39891 * 19 17 15 22 22 H 1.48503 * 109.46960 * 59.99993 * 21 19 17 23 23 H 1.48499 * 109.47339 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47218 * 299.99890 * 21 19 17 25 25 N 1.33473 * 109.35562 * 0.02562 * 8 7 6 26 26 C 1.32499 * 109.75051 * 359.97438 * 25 8 7 27 27 N 1.31259 * 119.82359 * 180.27790 * 2 1 3 28 28 H 1.09003 * 109.46819 * 269.71784 * 1 2 3 29 29 H 1.08993 * 109.47465 * 29.72728 * 1 2 3 30 30 H 1.09004 * 109.46614 * 149.72337 * 1 2 3 31 31 H 1.08003 * 120.36271 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46954 * 270.26776 * 5 4 3 33 33 H 1.09002 * 109.47404 * 30.25987 * 5 4 3 34 34 H 1.08998 * 109.46860 * 150.26552 * 5 4 3 35 35 H 1.09001 * 109.47033 * 83.83285 * 12 11 9 36 36 H 1.09000 * 109.46949 * 203.83677 * 12 11 9 37 37 H 1.08999 * 109.46651 * 323.83325 * 12 11 9 38 38 H 1.08996 * 109.47652 * 210.00593 * 13 11 9 39 39 H 1.09006 * 109.47260 * 330.00691 * 13 11 9 40 40 H 1.09005 * 109.47280 * 300.00143 * 14 13 11 41 41 H 1.09003 * 109.47281 * 60.00539 * 14 13 11 42 42 H 1.09001 * 109.46748 * 85.22149 * 16 15 14 43 43 H 1.08999 * 109.47408 * 205.21797 * 16 15 14 44 44 H 1.09000 * 109.47268 * 325.22235 * 16 15 14 45 45 H 0.96997 * 119.99707 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5609 1.2031 0.0049 5 6 4.3378 2.4944 0.0106 6 7 4.2101 0.0063 -0.0009 7 7 5.5650 -0.3504 -0.0026 8 6 5.6152 -1.6692 -0.0084 9 6 6.8556 -2.4791 -0.0115 10 8 7.9352 -1.9365 -0.1410 11 7 6.7866 -3.8177 0.1292 12 6 5.4822 -4.4794 0.2114 13 6 8.0162 -4.6111 0.2000 14 6 8.4585 -4.7371 1.6592 15 7 9.6884 -5.5300 1.7300 16 6 10.9926 -4.8678 1.6478 17 6 9.6189 -6.8902 1.8727 18 1 8.7954 -7.4373 1.4383 19 6 10.6069 -7.5655 2.5760 20 7 11.5408 -6.8901 3.2117 21 14 10.6112 -9.4330 2.6202 22 1 10.7309 -9.9605 1.2372 23 1 11.7614 -9.9064 3.4313 24 1 9.3448 -9.9167 3.2266 25 7 4.3737 -2.1591 -0.0110 26 6 3.4994 -1.1635 -0.0064 27 7 2.1598 -1.1387 -0.0055 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3634 0.8923 -0.5095 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6671 2.1531 0.0004 32 1 4.5247 2.8104 -1.0157 33 1 3.7627 3.2622 0.5281 34 1 5.2878 2.3445 0.5234 35 1 5.0984 -4.6521 -0.7941 36 1 5.5906 -5.4332 0.7277 37 1 4.7872 -3.8453 0.7617 38 1 7.8323 -5.6037 -0.2110 39 1 8.7999 -4.1188 -0.3759 40 1 8.6424 -3.7444 2.0702 41 1 7.6749 -5.2294 2.2352 42 1 11.2870 -4.5212 2.6384 43 1 11.7351 -5.5727 1.2740 44 1 10.9259 -4.0167 0.9701 45 1 12.2313 -7.3621 3.7028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667656820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:31 Heat of formation + Delta-G solvation = 142.248088 kcal Electronic energy + Delta-G solvation = -27941.149168 eV Core-core repulsion = 23998.186666 eV Total energy + Delta-G solvation = -3942.962502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -43.29156 -40.05499 -38.89289 -36.09272 -35.87313 -34.84951 -32.86741 -31.89509 -31.34663 -29.54773 -28.77875 -28.31214 -26.53993 -25.79210 -25.22480 -23.50168 -22.92057 -21.87469 -20.55521 -19.52982 -18.64706 -18.26373 -17.19159 -16.99944 -16.52801 -15.85629 -15.42676 -15.31585 -14.73081 -14.67894 -14.35849 -14.08477 -13.80644 -13.69169 -13.53836 -13.19970 -13.16359 -13.04000 -12.80445 -12.76284 -12.38153 -12.25770 -12.19854 -11.95379 -11.80248 -11.21263 -10.86256 -10.79741 -10.48143 -10.45320 -10.32949 -10.19139 -10.01528 -9.98470 -9.85056 -9.72961 -9.13735 -8.60190 -8.34127 -6.54536 -5.70023 -3.24060 -0.08988 0.22274 1.36727 1.60470 2.64308 2.80809 2.96709 3.32880 3.41788 3.46414 3.47358 3.50674 3.73745 4.05399 4.29063 4.51604 4.54749 4.61507 4.67945 4.80928 4.94071 4.99130 5.10408 5.34002 5.47248 5.48907 5.51577 5.56707 5.63750 5.77677 5.80029 5.82559 5.87287 6.19794 6.30427 6.35540 6.60213 6.71992 6.97323 7.01738 7.03638 7.37061 7.44686 7.56047 7.78105 7.84833 8.18490 8.51421 9.29675 9.89972 10.45380 11.36075 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024529 B = 0.002295 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.254900 B =12196.994316 C =12985.938195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.235 3.765 3 C -0.227 4.227 4 C 0.208 3.792 5 C -0.124 4.124 6 N -0.332 5.332 7 N -0.270 5.270 8 C 0.251 3.749 9 C 0.599 3.401 10 O -0.508 6.508 11 N -0.581 5.581 12 C 0.071 3.929 13 C 0.092 3.908 14 C 0.141 3.859 15 N -0.596 5.596 16 C 0.161 3.839 17 C -0.262 4.262 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 N -0.495 5.495 26 C 0.447 3.553 27 N -0.459 5.459 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.019 0.981 43 H 0.050 0.950 44 H -0.002 1.002 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.089 20.231 -7.650 33.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 C -0.252 4.252 4 C 0.090 3.910 5 C -0.181 4.181 6 N -0.113 5.113 7 N -0.103 5.103 8 C -0.033 4.033 9 C 0.379 3.621 10 O -0.380 6.380 11 N -0.313 5.313 12 C -0.072 4.072 13 C -0.032 4.032 14 C 0.012 3.988 15 N -0.319 5.319 16 C 0.016 3.984 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.208 1.208 25 N -0.230 5.230 26 C 0.087 3.913 27 N -0.176 5.176 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.192 0.808 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.839 19.488 -7.605 31.716 hybrid contribution 0.149 -0.256 0.095 0.311 sum -23.690 19.232 -7.510 31.424 Atomic orbital electron populations 1.20898 0.86073 1.04986 1.04616 1.22075 0.98152 0.86814 0.86038 1.21642 0.91321 1.01484 1.10720 1.20931 0.92075 0.86591 0.91382 1.21103 1.01282 0.90617 1.05131 1.49080 1.07573 1.07974 1.46677 1.78906 0.88743 1.13360 1.29332 1.24419 0.93183 0.89520 0.96142 1.16423 0.84318 0.82103 0.79210 1.90856 1.27056 1.71036 1.49082 1.47785 1.09513 1.04782 1.69230 1.22275 0.83568 0.98774 1.02583 1.22706 0.83814 0.94324 1.02313 1.21012 0.90341 0.95241 0.92166 1.43740 0.99663 1.03476 1.85014 1.20775 0.86965 0.93659 0.96981 1.19082 1.09687 0.82250 1.28197 0.91822 1.25273 0.98879 0.98143 0.96787 1.70021 1.15939 1.34083 1.34648 0.86337 0.77123 0.85431 0.77585 1.20916 1.21629 1.20813 1.71254 0.97687 1.25531 1.28527 1.22955 0.90233 0.81841 0.96292 1.67886 1.01660 1.28889 1.19161 0.88600 0.89170 0.89076 0.80849 0.88372 0.88284 0.88851 0.92480 0.90809 0.88315 0.89981 0.90145 0.94403 0.93271 0.96215 0.93082 0.98320 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.26 10.19 36.01 0.37 0.11 16 2 C 0.23 1.55 6.83 -82.11 -0.56 0.99 16 3 C -0.23 -1.10 9.39 -39.77 -0.37 -1.47 16 4 C 0.21 1.64 6.86 -81.59 -0.56 1.08 16 5 C -0.12 -0.60 10.13 36.01 0.36 -0.23 16 6 N -0.33 -4.25 3.91 -10.07 -0.04 -4.29 16 7 N -0.27 -4.37 12.68 32.02 0.41 -3.96 16 8 C 0.25 4.30 7.63 -156.79 -1.20 3.10 16 9 C 0.60 11.31 7.69 -12.20 -0.09 11.22 16 10 O -0.51 -11.07 16.63 5.35 0.09 -10.98 16 11 N -0.58 -10.23 2.87 -182.58 -0.52 -10.75 16 12 C 0.07 1.03 9.56 59.85 0.57 1.60 16 13 C 0.09 1.81 5.73 -4.04 -0.02 1.78 16 14 C 0.14 3.19 6.01 -4.04 -0.02 3.17 16 15 N -0.60 -15.87 2.89 -181.12 -0.52 -16.39 16 16 C 0.16 4.25 9.00 59.85 0.54 4.79 16 17 C -0.26 -7.37 9.57 -15.06 -0.14 -7.52 16 18 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 19 C 0.01 0.24 5.15 -17.43 -0.09 0.15 16 20 N -0.90 -27.15 11.01 55.49 0.61 -26.54 16 21 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 N -0.49 -7.81 7.66 -12.23 -0.09 -7.90 16 26 C 0.45 6.22 8.99 -323.04 -2.90 3.31 16 27 N -0.46 -5.16 10.40 -10.01 -0.10 -5.26 16 28 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 -0.03 8.09 -51.93 -0.42 -0.45 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.17 0.04 8.06 -52.48 -0.42 -0.38 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.15 8.09 -51.93 -0.42 -0.27 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 37 H 0.10 1.47 5.35 -51.93 -0.28 1.19 16 38 H 0.08 1.55 8.07 -51.93 -0.42 1.13 16 39 H 0.08 1.69 7.38 -51.93 -0.38 1.31 16 40 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 42 H 0.02 0.55 7.75 -51.93 -0.40 0.15 16 43 H 0.05 1.42 7.14 -51.93 -0.37 1.04 16 44 H 0.00 -0.04 8.11 -51.93 -0.42 -0.46 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -37.19 380.67 -10.04 -47.24 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -6.45 Total: -6.09 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: -4.13 Total: 22.09 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -0.27 Total: -75.09 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.19 -10.04 -47.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667656820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.485 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds