Wall clock time and date at job start Tue Mar 31 2020 17:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40170 * 119.82177 * 2 1 4 4 C 1.35682 * 119.27246 * 179.76436 * 3 2 1 5 5 C 1.50701 * 120.48490 * 180.24506 * 4 3 2 6 6 N 1.36161 * 119.02717 * 0.50717 * 4 3 2 7 7 N 1.40103 * 133.22542 * 179.76474 * 6 4 3 8 8 C 1.31980 * 106.92685 * 179.97438 * 7 6 4 9 9 C 1.48133 * 125.32403 * 180.02562 * 8 7 6 10 10 O 1.21521 * 120.00016 * 352.77852 * 9 8 7 11 11 N 1.34773 * 119.99930 * 172.77846 * 9 8 7 12 12 C 1.46504 * 120.00228 * 3.35997 * 11 9 8 13 13 C 1.46501 * 120.00121 * 183.35470 * 11 9 8 14 14 C 1.52997 * 109.46952 * 90.00055 * 13 11 9 15 15 N 1.46499 * 109.47413 * 180.02562 * 14 13 11 16 16 C 1.46498 * 120.00150 * 89.99568 * 15 14 13 17 17 C 1.36942 * 120.00137 * 270.00706 * 15 14 13 18 18 H 1.07998 * 119.99911 * 32.08883 * 17 15 14 19 19 C 1.38814 * 119.99868 * 212.10232 * 17 15 14 20 20 N 1.31618 * 120.00026 * 6.39874 * 19 17 15 21 21 Si 1.86795 * 119.99888 * 186.39891 * 19 17 15 22 22 H 1.48503 * 109.46960 * 59.99993 * 21 19 17 23 23 H 1.48499 * 109.47339 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47218 * 299.99890 * 21 19 17 25 25 N 1.33473 * 109.35562 * 0.02562 * 8 7 6 26 26 C 1.32499 * 109.75051 * 359.97438 * 25 8 7 27 27 N 1.31259 * 119.82359 * 180.27790 * 2 1 3 28 28 H 1.09003 * 109.46819 * 269.71784 * 1 2 3 29 29 H 1.08993 * 109.47465 * 29.72728 * 1 2 3 30 30 H 1.09004 * 109.46614 * 149.72337 * 1 2 3 31 31 H 1.08003 * 120.36271 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46954 * 270.26776 * 5 4 3 33 33 H 1.09002 * 109.47404 * 30.25987 * 5 4 3 34 34 H 1.08998 * 109.46860 * 150.26552 * 5 4 3 35 35 H 1.09001 * 109.47033 * 83.83285 * 12 11 9 36 36 H 1.09000 * 109.46949 * 203.83677 * 12 11 9 37 37 H 1.08999 * 109.46651 * 323.83325 * 12 11 9 38 38 H 1.08996 * 109.47652 * 210.00593 * 13 11 9 39 39 H 1.09006 * 109.47260 * 330.00691 * 13 11 9 40 40 H 1.09005 * 109.47280 * 300.00143 * 14 13 11 41 41 H 1.09003 * 109.47281 * 60.00539 * 14 13 11 42 42 H 1.09001 * 109.46748 * 85.22149 * 16 15 14 43 43 H 1.08999 * 109.47408 * 205.21797 * 16 15 14 44 44 H 1.09000 * 109.47268 * 325.22235 * 16 15 14 45 45 H 0.96997 * 119.99707 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5609 1.2031 0.0049 5 6 4.3378 2.4944 0.0106 6 7 4.2101 0.0063 -0.0009 7 7 5.5650 -0.3504 -0.0026 8 6 5.6152 -1.6692 -0.0084 9 6 6.8556 -2.4791 -0.0115 10 8 7.9352 -1.9365 -0.1410 11 7 6.7866 -3.8177 0.1292 12 6 5.4822 -4.4794 0.2114 13 6 8.0162 -4.6111 0.2000 14 6 8.4585 -4.7371 1.6592 15 7 9.6884 -5.5300 1.7300 16 6 10.9926 -4.8678 1.6478 17 6 9.6189 -6.8902 1.8727 18 1 8.7954 -7.4373 1.4383 19 6 10.6069 -7.5655 2.5760 20 7 11.5408 -6.8901 3.2117 21 14 10.6112 -9.4330 2.6202 22 1 10.7309 -9.9605 1.2372 23 1 11.7614 -9.9064 3.4313 24 1 9.3448 -9.9167 3.2266 25 7 4.3737 -2.1591 -0.0110 26 6 3.4994 -1.1635 -0.0064 27 7 2.1598 -1.1387 -0.0055 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3634 0.8923 -0.5095 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6671 2.1531 0.0004 32 1 4.5247 2.8104 -1.0157 33 1 3.7627 3.2622 0.5281 34 1 5.2878 2.3445 0.5234 35 1 5.0984 -4.6521 -0.7941 36 1 5.5906 -5.4332 0.7277 37 1 4.7872 -3.8453 0.7617 38 1 7.8323 -5.6037 -0.2110 39 1 8.7999 -4.1188 -0.3759 40 1 8.6424 -3.7444 2.0702 41 1 7.6749 -5.2294 2.2352 42 1 11.2870 -4.5212 2.6384 43 1 11.7351 -5.5727 1.2740 44 1 10.9259 -4.0167 0.9701 45 1 12.2313 -7.3621 3.7028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667656820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:30 Heat of formation + Delta-G solvation = 119.608458 kcal Electronic energy + Delta-G solvation = -27942.130896 eV Core-core repulsion = 23998.186666 eV Total energy + Delta-G solvation = -3943.944230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -44.20218 -41.26831 -39.91896 -37.89664 -36.74022 -36.41106 -33.76591 -33.36401 -32.64172 -30.58534 -30.11632 -28.79867 -27.99535 -27.72899 -26.68981 -24.75042 -23.97839 -22.78052 -22.36763 -20.76857 -19.50573 -19.19779 -18.75585 -18.19579 -18.05708 -17.42811 -16.78951 -16.51036 -16.00168 -15.58059 -15.43007 -15.26305 -14.97155 -14.74652 -14.57929 -14.37809 -14.32658 -14.06178 -13.98696 -13.86767 -13.44250 -13.19033 -13.09849 -13.03984 -12.87076 -12.84694 -12.74833 -12.60582 -12.48852 -12.21648 -11.98018 -11.71442 -11.63673 -11.29628 -11.07183 -10.79776 -10.65466 -10.01671 -9.89309 -8.67679 -7.86477 -5.45084 -0.79270 -0.57401 0.50353 0.54321 1.47155 1.50831 1.51440 1.58001 1.83474 2.03727 2.21788 2.50404 2.72913 3.08270 3.13276 3.30065 3.66941 3.73105 3.97687 4.07163 4.18101 4.27253 4.33836 4.37282 4.42993 4.51128 4.57366 4.61268 4.75186 4.80455 4.81625 4.83413 4.86433 4.88427 5.01717 5.07071 5.16279 5.19634 5.27095 5.34416 5.43707 5.56333 5.64378 6.03399 6.22675 6.35081 6.49715 6.77327 7.12293 7.77999 8.31008 9.19018 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024529 B = 0.002295 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.254900 B =12196.994316 C =12985.938195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.238 3.762 3 C -0.189 4.189 4 C 0.174 3.826 5 C -0.120 4.120 6 N -0.334 5.334 7 N -0.297 5.297 8 C 0.233 3.767 9 C 0.598 3.402 10 O -0.549 6.549 11 N -0.578 5.578 12 C 0.075 3.925 13 C 0.111 3.889 14 C 0.147 3.853 15 N -0.613 5.613 16 C 0.177 3.823 17 C -0.272 4.272 18 H 0.076 0.924 19 C -0.049 4.049 20 N -0.939 5.939 21 Si 0.978 3.022 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.271 1.271 25 N -0.515 5.515 26 C 0.432 3.568 27 N -0.491 5.491 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.053 0.947 42 H -0.004 1.004 43 H 0.032 0.968 44 H 0.016 0.984 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.325 21.645 -8.283 37.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 C -0.213 4.213 4 C 0.059 3.941 5 C -0.177 4.177 6 N -0.116 5.116 7 N -0.133 5.133 8 C -0.051 4.051 9 C 0.380 3.620 10 O -0.424 6.424 11 N -0.309 5.309 12 C -0.066 4.066 13 C -0.013 4.013 14 C 0.020 3.980 15 N -0.337 5.337 16 C 0.031 3.969 17 C -0.402 4.402 18 H 0.093 0.907 19 C -0.245 4.245 20 N -0.584 5.584 21 Si 0.804 3.196 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.197 1.197 25 N -0.252 5.252 26 C 0.073 3.927 27 N -0.211 5.211 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.251 0.749 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.014 0.986 43 H 0.050 0.950 44 H 0.035 0.965 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -28.184 20.947 -8.256 36.073 hybrid contribution 1.142 -0.446 0.284 1.259 sum -27.042 20.501 -7.971 34.858 Atomic orbital electron populations 1.21156 0.82528 1.06629 1.06047 1.23076 1.00175 0.86325 0.82870 1.22396 0.89844 1.03141 1.05902 1.21890 0.93541 0.86096 0.92572 1.21227 1.00344 0.90116 1.05968 1.49114 1.06157 1.09488 1.46807 1.78708 0.91413 1.13011 1.30138 1.23817 0.92970 0.89793 0.98501 1.16684 0.84649 0.82395 0.78236 1.90810 1.28766 1.71901 1.50965 1.47778 1.09899 1.04563 1.68695 1.22379 0.81928 0.98796 1.03524 1.22232 0.84448 0.94995 0.99633 1.21025 0.89027 0.93900 0.94089 1.43961 1.00588 1.03701 1.85418 1.20509 0.86920 0.93580 0.95851 1.19491 1.09861 0.83039 1.27788 0.90651 1.26148 0.98652 1.03039 0.96656 1.70204 1.16668 1.35837 1.35733 0.85205 0.77103 0.79495 0.77760 1.19932 1.22151 1.19664 1.71055 0.97381 1.26971 1.29812 1.23126 0.91159 0.81887 0.96545 1.68040 1.00096 1.31383 1.21531 0.86845 0.85189 0.89800 0.74881 0.87383 0.83997 0.91661 0.91233 0.89672 0.88439 0.88676 0.91774 0.95772 0.92867 0.98606 0.94959 0.96529 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.01 10.19 71.24 0.73 0.74 16 2 C 0.24 2.28 6.83 43.12 0.29 2.57 16 3 C -0.19 -0.93 9.39 22.15 0.21 -0.72 16 4 C 0.17 2.34 6.86 41.29 0.28 2.62 16 5 C -0.12 -0.86 10.13 71.24 0.72 -0.14 16 6 N -0.33 -8.55 3.91 -185.77 -0.73 -9.28 16 7 N -0.30 -10.12 12.68 -52.60 -0.67 -10.78 16 8 C 0.23 8.40 7.63 137.40 1.05 9.45 16 9 C 0.60 23.84 7.69 86.87 0.67 24.51 16 10 O -0.55 -25.43 16.63 -3.78 -0.06 -25.49 16 11 N -0.58 -20.94 2.87 -849.86 -2.44 -23.38 16 12 C 0.08 2.20 9.56 127.77 1.22 3.42 16 13 C 0.11 4.44 5.73 86.38 0.49 4.94 16 14 C 0.15 6.81 6.01 86.38 0.52 7.33 16 15 N -0.61 -33.32 2.89 -726.93 -2.10 -35.42 16 16 C 0.18 9.69 9.00 127.77 1.15 10.83 16 17 C -0.27 -15.34 9.57 84.03 0.80 -14.54 16 18 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 19 C -0.05 -2.84 5.15 84.86 0.44 -2.40 16 20 N -0.94 -57.79 11.01 21.65 0.24 -57.55 16 21 Si 0.98 45.64 29.56 68.60 2.03 47.67 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 N -0.52 -16.84 7.66 -192.62 -1.48 -18.31 16 26 C 0.43 12.08 8.99 261.57 2.35 14.43 16 27 N -0.49 -10.39 10.40 -185.59 -1.93 -12.32 16 28 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.13 -0.97 8.09 -2.39 -0.02 -0.99 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.23 -1.73 8.06 -2.91 -0.02 -1.76 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.14 -0.26 8.09 -2.39 -0.02 -0.28 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 2.26 8.03 -2.39 -0.02 2.24 16 37 H 0.10 2.97 5.35 -2.39 -0.01 2.95 16 38 H 0.09 3.56 8.07 -2.39 -0.02 3.54 16 39 H 0.06 2.79 7.38 -2.38 -0.02 2.77 16 40 H 0.02 1.17 8.07 -2.38 -0.02 1.15 16 41 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 42 H 0.00 -0.26 7.75 -2.39 -0.02 -0.28 16 43 H 0.03 1.84 7.14 -2.39 -0.02 1.83 16 44 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 45 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -87.18 380.67 4.79 -82.39 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: 1.01 Total: -0.55 kcal Atomic # 6 Polarization: 52.11 SS G_CDS: 10.93 Total: 63.04 kcal Atomic # 7 Polarization: -157.94 SS G_CDS: -9.11 Total: -167.04 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.06 Total: -25.49 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -87.18 4.79 -82.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667656820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.997 kcal (2) G-P(sol) polarization free energy of solvation -87.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds