Wall clock time and date at job start Tue Mar 31 2020 18:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 119.99777 * 2 1 4 4 C 1.53005 * 109.47087 * 269.99264 * 3 2 1 5 5 C 1.53002 * 109.47323 * 300.00634 * 4 3 2 6 6 C 1.52997 * 109.46746 * 60.00153 * 4 3 2 7 7 C 1.52994 * 109.47432 * 179.97438 * 4 3 2 8 8 N 1.46506 * 109.46986 * 180.02562 * 7 4 3 9 9 C 1.36939 * 119.99738 * 179.97438 * 8 7 4 10 10 H 1.08005 * 120.00081 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99901 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99677 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99774 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47415 * 89.99732 * 13 11 9 15 15 H 1.48504 * 109.46888 * 209.99633 * 13 11 9 16 16 H 1.48491 * 109.47347 * 329.99389 * 13 11 9 17 17 C 1.34774 * 119.99973 * 179.97438 * 2 1 3 18 18 O 1.21532 * 119.99881 * 182.05615 * 17 2 1 19 19 C 1.48122 * 120.00435 * 2.06387 * 17 2 1 20 20 C 1.39821 * 119.37773 * 172.66066 * 19 17 2 21 21 C 1.36965 * 119.60449 * 180.02562 * 20 19 17 22 22 C 1.39808 * 118.25651 * 0.02562 * 21 20 19 23 23 N 1.34648 * 135.00532 * 180.02562 * 22 21 20 24 24 N 1.28669 * 109.16289 * 180.02562 * 23 22 21 25 25 N 1.28769 * 111.84292 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.85543 * 180.02562 * 25 24 23 27 27 C 1.37247 * 108.28589 * 0.02562 * 25 24 23 28 28 N 1.31956 * 134.71013 * 179.97438 * 27 25 24 29 29 H 1.08996 * 109.47473 * 263.72788 * 1 2 3 30 30 H 1.08995 * 109.47076 * 23.72846 * 1 2 3 31 31 H 1.09002 * 109.46497 * 143.72531 * 1 2 3 32 32 H 1.08993 * 109.47975 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47505 * 149.99942 * 3 2 1 34 34 H 1.09003 * 109.47343 * 59.99231 * 5 4 3 35 35 H 1.08993 * 109.47540 * 179.97438 * 5 4 3 36 36 H 1.09010 * 109.46627 * 299.99493 * 5 4 3 37 37 H 1.08998 * 109.47477 * 60.00329 * 6 4 3 38 38 H 1.09002 * 109.47428 * 180.02562 * 6 4 3 39 39 H 1.09000 * 109.47690 * 300.00099 * 6 4 3 40 40 H 1.08998 * 109.47222 * 299.99935 * 7 4 3 41 41 H 1.09000 * 109.46843 * 60.00690 * 7 4 3 42 42 H 0.96995 * 120.00109 * 0.02562 * 8 7 4 43 43 H 0.97001 * 119.99592 * 180.02562 * 12 11 9 44 44 H 1.07994 * 120.19184 * 0.02562 * 20 19 17 45 45 H 1.07997 * 120.86652 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2794 0.6439 -2.1637 6 6 1.1157 1.8932 -2.1638 7 6 3.2169 3.0356 -1.4426 8 7 3.4607 3.4587 -2.8239 9 6 4.1328 4.6252 -3.0742 10 1 4.4836 5.2332 -2.2533 11 6 4.3642 5.0258 -4.3830 12 7 5.0107 6.1468 -4.6235 13 14 3.7581 3.9740 -5.8027 14 1 2.3846 4.3945 -6.1793 15 1 4.6644 4.1438 -6.9667 16 1 3.7435 2.5474 -5.3908 17 6 2.1389 -1.1672 0.0005 18 8 3.3536 -1.1675 0.0383 19 6 1.3991 -2.4496 -0.0451 20 6 2.1076 -3.6451 -0.1997 21 6 1.4281 -4.8335 -0.2430 22 6 0.0350 -4.8039 -0.1300 23 7 -0.9401 -5.7325 -0.1281 24 7 -2.0787 -5.1491 0.0092 25 7 -1.9538 -3.8709 0.1035 26 1 -2.6787 -3.2357 0.2128 27 6 -0.6191 -3.5616 0.0228 28 7 0.0781 -2.4418 0.0583 29 1 -0.3634 -0.1123 1.0214 30 1 -0.3633 0.9407 -0.4135 31 1 -0.3632 -0.8285 -0.6081 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1385 0.5139 34 1 2.7345 -0.3001 -2.1636 35 1 3.4608 0.9583 -3.1915 36 1 4.2319 0.5137 -1.6498 37 1 0.5266 2.6528 -1.6502 38 1 1.2974 2.2073 -3.1917 39 1 0.5707 0.9492 -2.1638 40 1 2.6274 3.7951 -0.9291 41 1 4.1693 2.9057 -0.9287 42 1 3.1453 2.9129 -3.5611 43 1 5.1720 6.4269 -5.5381 44 1 3.1841 -3.6313 -0.2845 45 1 1.9548 -5.7688 -0.3622 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674835299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:00 Heat of formation + Delta-G solvation = 132.009162 kcal Electronic energy + Delta-G solvation = -28776.078660 eV Core-core repulsion = 24832.672165 eV Total energy + Delta-G solvation = -3943.406496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -43.93854 -40.91416 -39.11620 -37.45589 -35.50860 -34.75065 -33.21525 -32.32965 -31.49443 -30.63198 -28.01964 -27.25906 -26.54008 -25.95565 -25.12475 -24.22674 -23.25379 -22.19179 -20.58325 -19.36065 -18.97281 -18.70351 -17.71113 -17.62050 -17.17624 -16.29891 -15.97814 -15.78634 -14.87999 -14.56050 -14.28810 -14.12417 -14.07741 -13.84337 -13.34662 -13.23648 -13.13846 -12.99367 -12.92512 -12.73748 -12.36734 -12.33424 -12.22505 -11.97859 -11.42966 -11.35393 -11.33518 -10.88855 -10.85156 -10.59562 -10.41673 -10.37169 -10.02484 -9.82590 -9.71423 -9.58871 -9.53156 -8.87449 -8.70602 -7.18946 -5.74780 -3.09075 -0.45131 0.40660 1.53733 1.54161 2.35796 2.65277 3.12494 3.21108 3.37336 3.39987 3.45457 3.63252 3.79181 4.09419 4.22002 4.60547 4.75743 4.81173 4.95786 4.99360 5.08164 5.18896 5.24841 5.31176 5.43402 5.51425 5.60310 5.65792 5.67026 5.77169 5.82608 5.86924 5.95572 5.99473 6.11399 6.23043 6.33696 6.44348 6.55354 6.63491 6.73216 6.76828 6.80902 7.12799 7.54119 7.85114 8.02443 8.44747 9.24240 9.96736 10.17132 11.43947 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.002597 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.009916 B =10777.343568 C =10891.770338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.583 5.583 3 C 0.125 3.875 4 C -0.091 4.091 5 C -0.127 4.127 6 C -0.138 4.138 7 C 0.170 3.830 8 N -0.752 5.752 9 C -0.240 4.240 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.881 3.119 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.565 3.435 18 O -0.514 6.514 19 C 0.154 3.846 20 C -0.120 4.120 21 C -0.001 4.001 22 C -0.025 4.025 23 N -0.238 5.238 24 N 0.010 4.990 25 N -0.402 5.402 26 H 0.459 0.541 27 C 0.209 3.791 28 N -0.436 5.436 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.029 0.971 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.168 0.832 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 -22.356 12.549 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.314 5.314 3 C 0.002 3.998 4 C -0.092 4.092 5 C -0.185 4.185 6 C -0.195 4.195 7 C 0.043 3.957 8 N -0.398 5.398 9 C -0.370 4.370 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.584 5.584 13 Si 0.711 3.289 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.350 3.650 18 O -0.389 6.389 19 C 0.000 4.000 20 C -0.144 4.144 21 C -0.031 4.031 22 C -0.152 4.152 23 N -0.115 5.115 24 N 0.026 4.974 25 N -0.133 5.133 26 H 0.308 0.692 27 C -0.035 4.035 28 N -0.153 5.153 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.186 0.814 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.285 -22.586 12.690 30.080 hybrid contribution -0.039 -0.029 -1.194 1.195 sum -15.323 -22.615 11.496 29.638 Atomic orbital electron populations 1.22490 0.78517 1.03684 1.02511 1.47664 1.07798 1.05602 1.70334 1.21683 0.97805 0.83219 0.97064 1.21179 0.96417 0.97164 0.94433 1.21766 0.99702 0.96377 1.00616 1.21907 0.96038 1.00361 1.01233 1.20554 0.96305 0.91053 0.87826 1.42729 1.69554 1.26050 1.01491 1.19070 1.27587 0.96779 0.93521 0.89213 1.24649 1.00586 0.97169 0.96817 1.69699 1.46275 1.23005 1.19380 0.86599 0.78454 0.80371 0.83426 1.21154 1.21710 1.20365 1.17653 0.86619 0.82514 0.78222 1.90861 1.12173 1.86224 1.49620 1.21410 0.87363 0.95289 0.95944 1.21772 1.03176 0.90482 0.98956 1.20553 0.89155 0.99910 0.93507 1.20700 0.96338 0.90950 1.07225 1.75429 0.93710 1.24962 1.17373 1.78135 1.19540 0.88517 1.11179 1.44680 1.06289 1.07482 1.54891 0.69244 1.20060 0.86412 0.92362 1.04655 1.67139 1.07402 1.26053 1.14747 0.92681 0.91156 0.88254 0.89894 0.89149 0.94274 0.92670 0.91858 0.92644 0.92266 0.93327 0.95502 0.95292 0.80486 0.93121 0.81422 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 7.99 59.85 0.48 1.07 16 2 N -0.58 -6.35 2.40 -182.59 -0.44 -6.78 16 3 C 0.12 1.52 4.58 -4.04 -0.02 1.50 16 4 C -0.09 -1.35 0.60 -154.51 -0.09 -1.45 16 5 C -0.13 -2.06 7.00 37.16 0.26 -1.80 16 6 C -0.14 -1.93 7.07 37.16 0.26 -1.67 16 7 C 0.17 3.22 5.15 -4.04 -0.02 3.20 16 8 N -0.75 -17.75 4.81 -59.91 -0.29 -18.04 16 9 C -0.24 -6.80 10.47 -15.06 -0.16 -6.95 16 10 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 11 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 12 N -0.94 -29.58 13.97 55.49 0.78 -28.81 16 13 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 17 C 0.56 6.68 5.99 -12.20 -0.07 6.60 16 18 O -0.51 -7.38 14.24 5.34 0.08 -7.30 16 19 C 0.15 1.50 6.63 -82.93 -0.55 0.95 16 20 C -0.12 -0.96 9.55 -39.45 -0.38 -1.34 16 21 C 0.00 0.00 10.16 -39.46 -0.40 -0.41 16 22 C -0.02 -0.22 7.38 -84.91 -0.63 -0.85 16 23 N -0.24 -2.36 12.43 32.12 0.40 -1.96 16 24 N 0.01 0.08 13.28 60.35 0.80 0.88 16 25 N -0.40 -2.56 7.06 31.13 0.22 -2.34 16 26 H 0.46 1.18 8.96 -190.26 -1.71 -0.53 16 27 C 0.21 1.76 8.56 -156.28 -1.34 0.42 16 28 N -0.44 -3.81 6.02 -8.90 -0.05 -3.87 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.55 6.34 -51.93 -0.33 0.22 16 31 H 0.10 0.82 5.26 -52.25 -0.27 0.55 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 33 H 0.09 1.19 7.39 -51.93 -0.38 0.81 16 34 H 0.04 0.58 6.18 -51.93 -0.32 0.26 16 35 H 0.05 1.00 6.86 -51.93 -0.36 0.65 16 36 H 0.06 1.08 7.77 -51.92 -0.40 0.68 16 37 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 39 H 0.05 0.58 6.09 -51.93 -0.32 0.27 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.36 8.40 3.22 -40.82 -0.13 8.27 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.17 1.17 7.63 -52.49 -0.40 0.77 16 45 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -34.81 356.86 -7.69 -42.50 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.10 Total: 3.47 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.75 Total: -0.73 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 1.42 Total: -60.91 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.08 Total: -7.30 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.81 -7.69 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674835299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.509 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds