Wall clock time and date at job start Tue Mar 31 2020 18:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 119.99777 * 2 1 4 4 C 1.53005 * 109.47087 * 269.99264 * 3 2 1 5 5 C 1.53002 * 109.47323 * 300.00634 * 4 3 2 6 6 C 1.52997 * 109.46746 * 60.00153 * 4 3 2 7 7 C 1.52994 * 109.47432 * 179.97438 * 4 3 2 8 8 N 1.46506 * 109.46986 * 180.02562 * 7 4 3 9 9 C 1.36939 * 119.99738 * 179.97438 * 8 7 4 10 10 H 1.08005 * 120.00081 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99901 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99677 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99774 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47415 * 89.99732 * 13 11 9 15 15 H 1.48504 * 109.46888 * 209.99633 * 13 11 9 16 16 H 1.48491 * 109.47347 * 329.99389 * 13 11 9 17 17 C 1.34774 * 119.99973 * 179.97438 * 2 1 3 18 18 O 1.21532 * 119.99881 * 182.05615 * 17 2 1 19 19 C 1.48122 * 120.00435 * 2.06387 * 17 2 1 20 20 C 1.39821 * 119.37773 * 172.66066 * 19 17 2 21 21 C 1.36965 * 119.60449 * 180.02562 * 20 19 17 22 22 C 1.39808 * 118.25651 * 0.02562 * 21 20 19 23 23 N 1.34648 * 135.00532 * 180.02562 * 22 21 20 24 24 N 1.28669 * 109.16289 * 180.02562 * 23 22 21 25 25 N 1.28769 * 111.84292 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.85543 * 180.02562 * 25 24 23 27 27 C 1.37247 * 108.28589 * 0.02562 * 25 24 23 28 28 N 1.31956 * 134.71013 * 179.97438 * 27 25 24 29 29 H 1.08996 * 109.47473 * 263.72788 * 1 2 3 30 30 H 1.08995 * 109.47076 * 23.72846 * 1 2 3 31 31 H 1.09002 * 109.46497 * 143.72531 * 1 2 3 32 32 H 1.08993 * 109.47975 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47505 * 149.99942 * 3 2 1 34 34 H 1.09003 * 109.47343 * 59.99231 * 5 4 3 35 35 H 1.08993 * 109.47540 * 179.97438 * 5 4 3 36 36 H 1.09010 * 109.46627 * 299.99493 * 5 4 3 37 37 H 1.08998 * 109.47477 * 60.00329 * 6 4 3 38 38 H 1.09002 * 109.47428 * 180.02562 * 6 4 3 39 39 H 1.09000 * 109.47690 * 300.00099 * 6 4 3 40 40 H 1.08998 * 109.47222 * 299.99935 * 7 4 3 41 41 H 1.09000 * 109.46843 * 60.00690 * 7 4 3 42 42 H 0.96995 * 120.00109 * 0.02562 * 8 7 4 43 43 H 0.97001 * 119.99592 * 180.02562 * 12 11 9 44 44 H 1.07994 * 120.19184 * 0.02562 * 20 19 17 45 45 H 1.07997 * 120.86652 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2794 0.6439 -2.1637 6 6 1.1157 1.8932 -2.1638 7 6 3.2169 3.0356 -1.4426 8 7 3.4607 3.4587 -2.8239 9 6 4.1328 4.6252 -3.0742 10 1 4.4836 5.2332 -2.2533 11 6 4.3642 5.0258 -4.3830 12 7 5.0107 6.1468 -4.6235 13 14 3.7581 3.9740 -5.8027 14 1 2.3846 4.3945 -6.1793 15 1 4.6644 4.1438 -6.9667 16 1 3.7435 2.5474 -5.3908 17 6 2.1389 -1.1672 0.0005 18 8 3.3536 -1.1675 0.0383 19 6 1.3991 -2.4496 -0.0451 20 6 2.1076 -3.6451 -0.1997 21 6 1.4281 -4.8335 -0.2430 22 6 0.0350 -4.8039 -0.1300 23 7 -0.9401 -5.7325 -0.1281 24 7 -2.0787 -5.1491 0.0092 25 7 -1.9538 -3.8709 0.1035 26 1 -2.6787 -3.2357 0.2128 27 6 -0.6191 -3.5616 0.0228 28 7 0.0781 -2.4418 0.0583 29 1 -0.3634 -0.1123 1.0214 30 1 -0.3633 0.9407 -0.4135 31 1 -0.3632 -0.8285 -0.6081 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1385 0.5139 34 1 2.7345 -0.3001 -2.1636 35 1 3.4608 0.9583 -3.1915 36 1 4.2319 0.5137 -1.6498 37 1 0.5266 2.6528 -1.6502 38 1 1.2974 2.2073 -3.1917 39 1 0.5707 0.9492 -2.1638 40 1 2.6274 3.7951 -0.9291 41 1 4.1693 2.9057 -0.9287 42 1 3.1453 2.9129 -3.5611 43 1 5.1720 6.4269 -5.5381 44 1 3.1841 -3.6313 -0.2845 45 1 1.9548 -5.7688 -0.3622 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674835299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:59 Heat of formation + Delta-G solvation = 108.075542 kcal Electronic energy + Delta-G solvation = -28777.116500 eV Core-core repulsion = 24832.672165 eV Total energy + Delta-G solvation = -3944.444335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.55370 -41.75013 -39.94048 -38.63768 -36.64714 -35.50322 -34.85403 -33.06634 -32.70256 -32.04097 -28.92597 -28.33779 -27.62858 -27.40240 -25.97585 -25.00929 -23.99268 -23.81635 -21.51064 -20.30318 -19.98037 -19.61029 -19.32710 -18.47416 -17.81961 -17.23871 -17.03685 -16.49692 -16.46452 -15.90447 -15.55158 -15.30621 -15.06598 -14.83532 -14.56258 -14.34217 -14.09990 -14.07414 -13.88766 -13.76377 -13.58388 -13.30761 -13.21961 -12.90450 -12.83211 -12.69292 -12.54788 -12.50079 -12.24621 -12.10138 -11.74808 -11.67635 -11.56974 -11.36736 -10.97614 -10.45566 -10.42416 -10.20708 -9.61216 -9.26466 -8.02326 -5.33997 -1.10193 -0.19925 0.87393 0.98501 1.34661 1.37801 1.45011 1.59429 1.84134 2.47185 2.47735 2.55811 2.98163 3.17583 3.29095 3.42908 3.63165 3.66570 3.87768 3.91937 4.05460 4.13719 4.22914 4.44232 4.45657 4.52534 4.68589 4.70505 4.73800 4.81275 4.86110 4.91248 4.95018 5.07832 5.12842 5.14262 5.15662 5.24898 5.39768 5.45788 5.48557 5.60177 5.77250 6.11340 6.22361 6.30521 6.91385 6.98865 7.09100 7.86415 8.05091 9.19577 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.002597 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.009916 B =10777.343568 C =10891.770338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.582 5.582 3 C 0.131 3.869 4 C -0.081 4.081 5 C -0.119 4.119 6 C -0.134 4.134 7 C 0.166 3.834 8 N -0.753 5.753 9 C -0.228 4.228 10 H 0.058 0.942 11 C -0.064 4.064 12 N -0.984 5.984 13 Si 0.949 3.051 14 H -0.275 1.275 15 H -0.296 1.296 16 H -0.257 1.257 17 C 0.562 3.438 18 O -0.547 6.547 19 C 0.140 3.860 20 C -0.120 4.120 21 C 0.009 3.991 22 C -0.037 4.037 23 N -0.262 5.262 24 N 0.007 4.993 25 N -0.381 5.381 26 H 0.475 0.525 27 C 0.201 3.799 28 N -0.429 5.429 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.032 0.968 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.019 0.981 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.175 0.825 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.936 -24.456 12.882 32.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.312 5.312 3 C 0.008 3.992 4 C -0.083 4.083 5 C -0.176 4.176 6 C -0.191 4.191 7 C 0.040 3.960 8 N -0.399 5.399 9 C -0.359 4.359 10 H 0.076 0.924 11 C -0.255 4.255 12 N -0.635 5.635 13 Si 0.776 3.224 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.182 1.182 17 C 0.348 3.652 18 O -0.424 6.424 19 C -0.013 4.013 20 C -0.144 4.144 21 C -0.021 4.021 22 C -0.164 4.164 23 N -0.139 5.139 24 N 0.023 4.977 25 N -0.115 5.115 26 H 0.327 0.673 27 C -0.043 4.043 28 N -0.147 5.147 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.193 0.807 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -17.674 -24.716 13.065 33.075 hybrid contribution 0.656 0.623 -1.168 1.478 sum -17.017 -24.092 11.897 31.805 Atomic orbital electron populations 1.22639 0.76673 1.04342 1.03575 1.47722 1.08816 1.04811 1.69816 1.21511 0.98204 0.84566 0.94878 1.21068 0.96248 0.94388 0.96558 1.21670 0.99487 0.97384 0.99083 1.21881 0.95548 1.02026 0.99658 1.20725 0.96589 0.93493 0.85243 1.42732 1.68911 1.24621 1.03680 1.19064 1.26603 0.97606 0.92664 0.92383 1.25447 1.01590 0.98720 0.99793 1.69878 1.48501 1.25293 1.19847 0.85500 0.77950 0.79539 0.79368 1.20059 1.22244 1.18239 1.17957 0.86397 0.83312 0.77536 1.90846 1.13612 1.86800 1.51112 1.21194 0.87840 0.94797 0.97475 1.21858 1.03542 0.90189 0.98795 1.20842 0.88563 1.00702 0.92001 1.21029 0.97094 0.91036 1.07269 1.75418 0.94160 1.25656 1.18638 1.78078 1.19344 0.89266 1.10994 1.44694 1.06244 1.07176 1.53419 0.67312 1.20137 0.87018 0.92169 1.05019 1.67068 1.06994 1.26052 1.14596 0.91357 0.90174 0.87938 0.87488 0.90387 0.92912 0.94845 0.93383 0.91225 0.94604 0.91014 0.94682 0.96304 0.80043 0.93397 0.80726 0.79437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 7.99 127.77 1.02 1.94 16 2 N -0.58 -11.25 2.40 -849.89 -2.04 -13.29 16 3 C 0.13 2.93 4.58 86.38 0.40 3.33 16 4 C -0.08 -2.30 0.60 -52.18 -0.03 -2.33 16 5 C -0.12 -3.74 7.00 71.98 0.50 -3.23 16 6 C -0.13 -3.38 7.07 71.98 0.51 -2.88 16 7 C 0.17 6.18 5.15 86.38 0.44 6.63 16 8 N -0.75 -35.29 4.81 -343.44 -1.65 -36.94 16 9 C -0.23 -13.15 10.47 84.03 0.88 -12.27 16 10 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 11 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 12 N -0.98 -63.78 13.97 21.65 0.30 -63.48 16 13 Si 0.95 46.18 27.74 68.60 1.90 48.09 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 16 H -0.26 -11.53 6.52 99.48 0.65 -10.88 16 17 C 0.56 12.35 5.99 86.87 0.52 12.87 16 18 O -0.55 -15.28 14.24 -3.81 -0.05 -15.34 16 19 C 0.14 2.45 6.63 42.05 0.28 2.73 16 20 C -0.12 -1.69 9.55 22.35 0.21 -1.48 16 21 C 0.01 0.11 10.16 22.35 0.23 0.34 16 22 C -0.04 -0.58 7.38 39.83 0.29 -0.29 16 23 N -0.26 -4.76 12.43 -52.29 -0.65 -5.41 16 24 N 0.01 0.10 13.28 37.02 0.49 0.59 16 25 N -0.38 -3.93 7.06 -55.42 -0.39 -4.33 16 26 H 0.47 1.16 8.96 -219.84 -1.97 -0.81 16 27 C 0.20 2.91 8.56 134.30 1.15 4.06 16 28 N -0.43 -6.45 6.02 -182.08 -1.10 -7.55 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.93 6.34 -2.39 -0.02 0.92 16 31 H 0.10 1.35 5.26 -3.02 -0.02 1.33 16 32 H 0.11 1.90 8.07 -2.39 -0.02 1.88 16 33 H 0.08 1.98 7.39 -2.38 -0.02 1.96 16 34 H 0.05 1.50 6.18 -2.39 -0.01 1.48 16 35 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 36 H 0.05 1.64 7.77 -2.38 -0.02 1.62 16 37 H 0.07 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.03 1.08 6.86 -2.39 -0.02 1.06 16 39 H 0.07 1.48 6.09 -2.39 -0.01 1.46 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.37 16.56 3.22 -92.71 -0.30 16.27 16 43 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.18 2.18 7.63 -2.91 -0.02 2.15 16 45 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -76.38 356.86 2.42 -73.96 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -1.27 Total: 17.63 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 6.87 Total: 6.04 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -5.03 Total: -130.39 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.05 Total: -15.34 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.09 kcal Total: -76.38 2.42 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674835299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.039 kcal (2) G-P(sol) polarization free energy of solvation -76.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds