Wall clock time and date at job start Tue Mar 31 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21563 * 119.99536 * 359.97438 * 18 17 5 20 20 C 1.47819 * 120.00062 * 179.97438 * 18 17 5 21 21 C 1.41579 * 120.37743 * 0.02562 * 20 18 17 22 22 C 1.34818 * 120.11806 * 179.97438 * 21 20 18 23 23 N 1.36062 * 120.82566 * 0.02562 * 22 21 20 24 24 N 1.40241 * 133.73215 * 179.97438 * 23 22 21 25 25 N 1.28967 * 107.02601 * 180.02562 * 24 23 22 26 26 N 1.28538 * 110.84033 * 359.97438 * 25 24 23 27 27 C 1.32621 * 110.18814 * 0.02562 * 26 25 24 28 28 C 1.38455 * 120.37326 * 179.71953 * 20 18 17 29 29 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 33 33 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 34 34 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 35 35 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 36 36 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 37 37 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 1.07997 * 119.94024 * 359.97131 * 21 20 18 44 44 H 1.07997 * 119.58613 * 179.97438 * 22 21 20 45 45 H 1.08003 * 120.51851 * 0.02974 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.4616 5.4229 -0.9755 15 1 9.9924 7.6112 -0.0410 16 1 10.2544 5.6978 1.4250 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6988 4.0741 -0.4338 20 6 2.0853 4.7668 -2.6317 21 6 2.9837 4.8083 -3.7251 22 6 2.6221 5.4118 -4.8752 23 7 1.3964 5.9881 -5.0047 24 7 0.7514 6.6713 -6.0459 25 7 -0.4169 7.0039 -5.6126 26 7 -0.5868 6.6043 -4.4028 27 6 0.4968 5.9717 -3.9733 28 6 0.8347 5.3465 -2.7612 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 6.0357 2.2733 -0.6648 39 1 5.8894 2.4808 1.0970 40 1 5.4810 4.9908 -0.1315 41 1 7.4035 7.7129 -0.2771 42 1 4.3127 3.5646 -1.9981 43 1 3.9603 4.3558 -3.6378 44 1 3.3142 5.4388 -5.7037 45 1 0.1316 5.3229 -1.9417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675228491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:27 Heat of formation + Delta-G solvation = 112.246289 kcal Electronic energy + Delta-G solvation = -28334.311062 eV Core-core repulsion = 24390.047584 eV Total energy + Delta-G solvation = -3944.263478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -43.60377 -40.42966 -38.59615 -36.75352 -35.05394 -34.21013 -33.80216 -32.59240 -31.27829 -30.75883 -30.41051 -27.48122 -25.59905 -24.99565 -24.25795 -23.07190 -22.40249 -21.60313 -20.85952 -20.51024 -18.92468 -18.31252 -17.44970 -17.09651 -16.92066 -16.32124 -15.59315 -15.35184 -15.14083 -14.86624 -14.64385 -13.98610 -13.97674 -13.63685 -13.57734 -13.33788 -13.20272 -12.85305 -12.82972 -12.70816 -12.26885 -12.19665 -12.06766 -11.75787 -11.44374 -11.29481 -11.18638 -11.03131 -10.96100 -10.90098 -10.50943 -10.48340 -10.37012 -10.17221 -10.06821 -9.85798 -9.05114 -8.97552 -8.86145 -7.10526 -5.90793 -3.21406 -0.18788 0.13860 1.42937 1.84396 2.33386 2.83433 3.22247 3.34208 3.39818 3.40852 3.49008 3.80427 4.05107 4.30663 4.44228 4.56173 4.68237 4.75721 4.96686 5.00487 5.08030 5.16792 5.27960 5.32137 5.34438 5.39067 5.43017 5.47422 5.62863 5.70273 5.79564 5.81332 5.86497 5.92726 6.01163 6.04363 6.10808 6.16698 6.26123 6.35382 6.48568 6.52916 6.70785 7.47152 7.56146 8.10272 8.10394 8.26829 9.39079 9.92877 10.27971 11.31067 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.004059 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.867273 B = 6895.786420 C =10086.661662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.127 4.127 5 C 0.138 3.862 6 H 0.092 0.908 7 C 0.143 3.857 8 N -0.732 5.732 9 C -0.247 4.247 10 H 0.071 0.929 11 C -0.008 4.008 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.285 1.285 17 N -0.695 5.695 18 C 0.559 3.441 19 O -0.520 6.520 20 C -0.061 4.061 21 C -0.108 4.108 22 C 0.107 3.893 23 N -0.293 5.293 24 N -0.111 5.111 25 N -0.011 5.011 26 N -0.316 5.316 27 C 0.238 3.762 28 C -0.029 4.029 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.026 0.974 39 H 0.036 0.964 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.404 0.596 43 H 0.175 0.825 44 H 0.188 0.812 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -11.004 -6.184 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.166 4.166 5 C 0.033 3.967 6 H 0.110 0.890 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.378 4.378 10 H 0.089 0.911 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.346 5.346 18 C 0.344 3.656 19 O -0.397 6.397 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.020 4.020 23 N -0.073 5.073 24 N -0.095 5.095 25 N -0.004 5.004 26 N -0.177 5.177 27 C -0.016 4.016 28 C -0.052 4.052 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.240 0.760 43 H 0.192 0.808 44 H 0.205 0.795 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.224 -10.211 -6.587 16.542 hybrid contribution 1.994 0.168 0.080 2.003 sum -9.230 -10.043 -6.507 15.113 Atomic orbital electron populations 1.21748 0.96187 1.00953 1.01900 1.21568 0.95683 0.97603 1.01433 1.21688 0.94692 0.95563 1.03168 1.21993 0.96126 0.95983 1.02527 1.21432 0.96392 0.92612 0.86222 0.88971 1.20984 0.88878 0.89492 0.99107 1.42344 1.05482 1.01927 1.87939 1.19155 0.83599 0.92460 1.42568 0.91144 1.24738 0.97702 0.95623 1.02434 1.69645 1.33074 0.99081 1.56027 0.86281 0.85026 0.76968 0.77941 1.21214 1.21677 1.21199 1.45871 1.15143 1.55976 1.17621 1.17648 0.82787 0.78906 0.86282 1.90833 1.51249 1.58534 1.39041 1.20458 0.93566 0.97930 0.95311 1.21307 1.01449 0.99772 0.90601 1.21589 0.84317 0.95159 1.00967 1.49012 1.12972 1.34048 1.11302 1.82795 1.03113 1.16363 1.07189 1.77866 1.08216 1.10815 1.03465 1.75237 1.20050 1.17689 1.04726 1.22757 0.87656 0.99189 0.91980 1.20766 0.96934 0.93760 0.93789 0.92716 0.92973 0.93282 0.92597 0.92337 0.91338 0.91947 0.91784 0.90798 0.95633 0.94617 0.78042 0.93349 0.75959 0.80787 0.79454 0.80228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.15 0.37 -1.03 16 2 C -0.13 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.11 -1.27 3.82 -26.73 -0.10 -1.38 16 4 C -0.13 -1.40 4.89 -26.73 -0.13 -1.53 16 5 C 0.14 1.86 2.41 -67.93 -0.16 1.70 16 6 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 7 C 0.14 2.37 5.82 -4.04 -0.02 2.35 16 8 N -0.73 -16.12 5.43 -59.91 -0.33 -16.45 16 9 C -0.25 -6.26 9.99 -15.06 -0.15 -6.41 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.93 -26.21 13.06 55.49 0.72 -25.48 16 13 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 17 N -0.70 -8.47 4.43 -54.76 -0.24 -8.71 16 18 C 0.56 7.06 6.35 -12.34 -0.08 6.98 16 19 O -0.52 -7.84 13.50 5.31 0.07 -7.77 16 20 C -0.06 -0.65 5.90 -104.62 -0.62 -1.26 16 21 C -0.11 -0.89 9.48 -39.52 -0.37 -1.26 16 22 C 0.11 0.90 11.19 -16.89 -0.19 0.71 16 23 N -0.29 -3.51 3.94 -12.43 -0.05 -3.56 16 24 N -0.11 -1.56 13.98 60.35 0.84 -0.71 16 25 N -0.01 -0.16 13.35 60.35 0.81 0.64 16 26 N -0.32 -4.69 12.27 31.03 0.38 -4.31 16 27 C 0.24 3.06 8.02 -156.36 -1.25 1.80 16 28 C -0.03 -0.32 9.70 -38.65 -0.37 -0.69 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 35 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.39 9.08 7.33 -40.82 -0.30 8.78 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.40 4.37 6.67 -40.82 -0.27 4.09 16 43 H 0.17 1.04 6.46 -52.49 -0.34 0.70 16 44 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.18 1.88 7.67 -52.48 -0.40 1.48 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -31.68 376.43 -6.67 -38.35 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.18 Total: 8.02 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.35 Total: -1.70 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 2.14 Total: -58.58 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.07 Total: -7.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.68 -6.67 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675228491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.598 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.96 seconds