Wall clock time and date at job start Tue Mar 31 2020 18:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21563 * 119.99536 * 359.97438 * 18 17 5 20 20 C 1.47819 * 120.00062 * 179.97438 * 18 17 5 21 21 C 1.41579 * 120.37743 * 0.02562 * 20 18 17 22 22 C 1.34818 * 120.11806 * 179.97438 * 21 20 18 23 23 N 1.36062 * 120.82566 * 0.02562 * 22 21 20 24 24 N 1.40241 * 133.73215 * 179.97438 * 23 22 21 25 25 N 1.28967 * 107.02601 * 180.02562 * 24 23 22 26 26 N 1.28538 * 110.84033 * 359.97438 * 25 24 23 27 27 C 1.32621 * 110.18814 * 0.02562 * 26 25 24 28 28 C 1.38455 * 120.37326 * 179.71953 * 20 18 17 29 29 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 33 33 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 34 34 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 35 35 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 36 36 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 37 37 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 1.07997 * 119.94024 * 359.97131 * 21 20 18 44 44 H 1.07997 * 119.58613 * 179.97438 * 22 21 20 45 45 H 1.08003 * 120.51851 * 0.02974 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.4616 5.4229 -0.9755 15 1 9.9924 7.6112 -0.0410 16 1 10.2544 5.6978 1.4250 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6988 4.0741 -0.4338 20 6 2.0853 4.7668 -2.6317 21 6 2.9837 4.8083 -3.7251 22 6 2.6221 5.4118 -4.8752 23 7 1.3964 5.9881 -5.0047 24 7 0.7514 6.6713 -6.0459 25 7 -0.4169 7.0039 -5.6126 26 7 -0.5868 6.6043 -4.4028 27 6 0.4968 5.9717 -3.9733 28 6 0.8347 5.3465 -2.7612 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 6.0357 2.2733 -0.6648 39 1 5.8894 2.4808 1.0970 40 1 5.4810 4.9908 -0.1315 41 1 7.4035 7.7129 -0.2771 42 1 4.3127 3.5646 -1.9981 43 1 3.9603 4.3558 -3.6378 44 1 3.3142 5.4388 -5.7037 45 1 0.1316 5.3229 -1.9417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675228491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:24 Heat of formation + Delta-G solvation = 91.726501 kcal Electronic energy + Delta-G solvation = -28335.200867 eV Core-core repulsion = 24390.047584 eV Total energy + Delta-G solvation = -3945.153283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -44.57985 -41.45693 -39.54407 -37.90609 -36.21875 -35.24992 -35.10170 -33.66546 -32.73074 -31.69155 -31.54793 -28.74225 -26.68059 -25.92544 -25.68854 -23.99482 -23.70552 -22.68710 -21.75653 -21.59642 -19.93053 -19.32322 -19.01791 -18.08150 -18.02780 -17.31329 -16.71345 -16.50899 -16.22102 -15.94073 -15.76058 -15.26957 -15.16578 -14.98254 -14.47645 -14.43519 -14.26440 -14.09181 -13.81043 -13.72891 -13.46163 -13.14798 -13.06560 -12.84021 -12.73861 -12.73580 -12.46506 -12.30810 -12.14970 -11.96596 -11.82970 -11.80641 -11.38333 -11.37249 -11.25970 -11.13068 -10.89521 -10.01231 -9.79430 -8.95148 -7.90446 -5.18418 -1.08718 -0.75110 0.55678 0.88417 1.37061 1.52464 1.54116 1.59589 1.83086 2.27889 2.56477 2.60198 2.88266 3.25783 3.43869 3.45849 3.65303 3.72263 3.90597 4.04518 4.09026 4.13958 4.28793 4.33814 4.37173 4.41135 4.50248 4.60791 4.65779 4.69067 4.80715 4.90751 4.99182 5.00034 5.05382 5.13666 5.19537 5.20095 5.28385 5.38055 5.43611 5.56941 5.59436 5.66042 6.30553 6.47017 7.07868 7.10411 7.39571 8.13557 8.36399 9.31714 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.004059 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.867273 B = 6895.786420 C =10086.661662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.065 0.935 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.078 0.922 11 C -0.067 4.067 12 N -0.965 5.965 13 Si 0.964 3.036 14 H -0.274 1.274 15 H -0.303 1.303 16 H -0.284 1.284 17 N -0.689 5.689 18 C 0.560 3.440 19 O -0.548 6.548 20 C -0.055 4.055 21 C -0.096 4.096 22 C 0.112 3.888 23 N -0.292 5.292 24 N -0.123 5.123 25 N -0.030 5.030 26 N -0.342 5.342 27 C 0.228 3.772 28 C -0.034 4.034 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.376 0.624 41 H 0.248 0.752 42 H 0.413 0.587 43 H 0.205 0.795 44 H 0.228 0.772 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 -13.217 -6.926 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.145 4.145 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.083 0.917 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.372 4.372 10 H 0.096 0.904 11 C -0.260 4.260 12 N -0.616 5.616 13 Si 0.794 3.206 14 H -0.200 1.200 15 H -0.230 1.230 16 H -0.211 1.211 17 N -0.340 5.340 18 C 0.345 3.655 19 O -0.426 6.426 20 C -0.067 4.067 21 C -0.119 4.119 22 C -0.014 4.014 23 N -0.072 5.072 24 N -0.106 5.106 25 N -0.023 5.023 26 N -0.204 5.204 27 C -0.024 4.024 28 C -0.058 4.058 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.208 0.792 41 H 0.057 0.943 42 H 0.251 0.749 43 H 0.221 0.779 44 H 0.245 0.755 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.563 -12.483 -7.338 17.353 hybrid contribution 1.538 0.728 0.397 1.747 sum -8.026 -11.756 -6.941 15.836 Atomic orbital electron populations 1.21752 0.96154 1.01653 1.01298 1.21542 0.95727 0.96355 1.02293 1.21584 0.94831 0.96468 1.01630 1.21929 0.95775 0.94068 1.03909 1.21206 0.94296 0.94150 0.85991 0.91687 1.21140 0.90676 0.86869 0.99579 1.42508 1.04374 1.03878 1.87760 1.19555 0.85193 0.92453 1.39962 0.90369 1.25399 1.01031 0.95824 1.03745 1.69789 1.34432 0.98928 1.58429 0.85358 0.81223 0.75965 0.78042 1.20032 1.22962 1.21084 1.45769 1.15169 1.55693 1.17418 1.17847 0.82534 0.78532 0.86556 1.90831 1.52066 1.59490 1.40231 1.20369 0.93729 0.97405 0.95171 1.21628 1.01897 0.98976 0.89418 1.22364 0.83386 0.93484 1.02160 1.49149 1.13765 1.33746 1.10533 1.82685 1.03044 1.17052 1.07827 1.77822 1.08971 1.11657 1.03832 1.75133 1.21453 1.18817 1.04958 1.22783 0.87638 0.99457 0.92532 1.20747 0.97467 0.94204 0.93412 0.93479 0.93482 0.91915 0.91457 0.91654 0.93571 0.92906 0.89845 0.89879 0.93497 0.94637 0.79205 0.94301 0.74878 0.77852 0.75520 0.80256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.89 16 2 C -0.12 -2.08 5.93 30.59 0.18 -1.90 16 3 C -0.11 -2.27 3.82 30.60 0.12 -2.16 16 4 C -0.12 -2.31 4.89 30.60 0.15 -2.16 16 5 C 0.15 3.79 2.41 44.99 0.11 3.90 16 6 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 7 C 0.14 4.44 5.82 86.38 0.50 4.94 16 8 N -0.74 -31.62 5.43 -343.46 -1.87 -33.49 16 9 C -0.24 -11.77 9.99 84.03 0.84 -10.93 16 10 H 0.08 3.66 7.83 -2.91 -0.02 3.63 16 11 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 12 N -0.97 -54.39 13.06 21.65 0.28 -54.10 16 13 Si 0.96 42.62 29.55 68.60 2.03 44.65 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 N -0.69 -15.56 4.43 -445.43 -1.97 -17.53 16 18 C 0.56 13.63 6.35 86.78 0.55 14.18 16 19 O -0.55 -16.64 13.50 -3.91 -0.05 -16.69 16 20 C -0.05 -1.09 5.90 -19.87 -0.12 -1.21 16 21 C -0.10 -1.31 9.48 22.31 0.21 -1.10 16 22 C 0.11 1.58 11.19 83.25 0.93 2.51 16 23 N -0.29 -6.65 3.94 -193.23 -0.76 -7.41 16 24 N -0.12 -3.38 13.98 37.02 0.52 -2.86 16 25 N -0.03 -0.93 13.35 37.02 0.49 -0.43 16 26 N -0.34 -10.40 12.27 -55.73 -0.68 -11.08 16 27 C 0.23 5.86 8.02 134.05 1.07 6.93 16 28 C -0.03 -0.76 9.70 22.87 0.22 -0.54 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.18 7.85 -2.39 -0.02 1.16 16 35 H 0.05 1.22 5.64 -2.39 -0.01 1.20 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.38 17.45 7.33 -92.71 -0.68 16.77 16 41 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 42 H 0.41 7.75 6.67 -92.70 -0.62 7.13 16 43 H 0.20 1.58 6.46 -2.91 -0.02 1.56 16 44 H 0.23 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.18 3.92 7.67 -2.91 -0.02 3.90 16 Total: -1.00 -69.11 376.43 3.68 -65.43 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.26 Total: 25.98 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 5.95 Total: 7.55 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -3.99 Total: -126.92 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.05 Total: -16.69 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -69.11 3.68 -65.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675228491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.154 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds