Wall clock time and date at job start Tue Mar 31 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47162 * 2 1 4 4 N 1.46503 * 109.47703 * 119.99786 * 2 1 3 5 5 C 1.46494 * 119.99852 * 292.96817 * 4 2 1 6 6 C 1.53000 * 109.46955 * 269.99222 * 5 4 2 7 7 N 1.46507 * 109.47149 * 180.02562 * 6 5 4 8 8 C 1.46496 * 120.00056 * 270.00408 * 7 6 5 9 9 C 1.36935 * 119.99525 * 90.00226 * 7 6 5 10 10 H 1.08001 * 120.00285 * 3.05081 * 9 7 6 11 11 C 1.38812 * 119.99570 * 183.04795 * 9 7 6 12 12 N 1.31615 * 120.00406 * 31.09027 * 11 9 7 13 13 Si 1.86800 * 119.99953 * 211.08336 * 11 9 7 14 14 H 1.48498 * 109.47068 * 94.99745 * 13 11 9 15 15 H 1.48501 * 109.47338 * 214.99930 * 13 11 9 16 16 H 1.48507 * 109.47283 * 334.99720 * 13 11 9 17 17 C 1.34776 * 119.99695 * 112.95917 * 4 2 1 18 18 O 1.21574 * 119.99654 * 185.69991 * 17 4 2 19 19 C 1.47689 * 120.00308 * 5.70746 * 17 4 2 20 20 C 1.41599 * 120.03155 * 313.49070 * 19 17 4 21 21 C 1.35783 * 119.55003 * 180.23050 * 20 19 17 22 22 C 1.40863 * 119.38916 * 359.50795 * 21 20 19 23 23 N 1.32482 * 133.41626 * 180.19898 * 22 21 20 24 24 N 1.28540 * 110.24037 * 180.26806 * 23 22 21 25 25 N 1.28984 * 110.84392 * 359.97438 * 24 23 22 26 26 N 1.36936 * 119.93035 * 0.49165 * 22 21 20 27 27 C 1.35501 * 120.84233 * 359.76088 * 26 22 21 28 28 H 1.09003 * 109.46881 * 299.99469 * 1 2 3 29 29 H 1.08992 * 109.47150 * 59.99768 * 1 2 3 30 30 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47178 * 240.00094 * 2 1 3 32 32 H 1.08994 * 109.47253 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46869 * 300.00568 * 3 2 1 34 34 H 1.08996 * 109.47212 * 59.99936 * 3 2 1 35 35 H 1.09001 * 109.47781 * 29.99454 * 5 4 2 36 36 H 1.09000 * 109.47356 * 149.99697 * 5 4 2 37 37 H 1.08999 * 109.47611 * 300.00146 * 6 5 4 38 38 H 1.08997 * 109.47248 * 60.00595 * 6 5 4 39 39 H 1.09004 * 109.47092 * 89.04416 * 8 7 6 40 40 H 1.09002 * 109.46846 * 209.03878 * 8 7 6 41 41 H 1.09001 * 109.47094 * 329.03827 * 8 7 6 42 42 H 0.96997 * 120.00571 * 180.02562 * 12 11 9 43 43 H 1.07998 * 120.22767 * 359.95772 * 20 19 17 44 44 H 1.07995 * 120.30509 * 179.74929 * 21 20 19 45 45 H 1.07998 * 119.81995 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1962 5 6 1.7959 -0.1067 2.5212 6 6 2.9707 0.8053 2.8804 7 7 2.7485 1.3888 4.2058 8 6 2.0375 2.6631 4.3353 9 6 3.2054 0.7429 5.3235 10 1 3.7723 -0.1711 5.2252 11 6 2.9400 1.2630 6.5828 12 7 1.8318 1.9406 6.7948 13 14 4.1557 1.0012 7.9767 14 1 5.0602 2.1751 8.0716 15 1 3.4166 0.8411 9.2547 16 1 4.9569 -0.2209 7.7118 17 6 2.6724 -1.8631 1.0775 18 8 2.9864 -2.4873 2.0724 19 6 3.0076 -2.3895 -0.2610 20 6 2.0288 -2.3993 -1.2842 21 6 2.3463 -2.8899 -2.5099 22 6 3.6488 -3.3717 -2.7455 23 7 4.2487 -3.8938 -3.8051 24 7 5.4670 -4.1924 -3.5242 25 7 5.7416 -3.8955 -2.2994 26 7 4.5773 -3.3512 -1.7392 27 6 4.2626 -2.8672 -0.5134 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.8741 0.4749 2.5119 36 1 1.7154 -0.9035 3.2605 37 1 3.8926 0.2238 2.8898 38 1 3.0513 1.6022 2.1412 39 1 0.9675 2.4748 4.4232 40 1 2.3886 3.1862 5.2248 41 1 2.2275 3.2763 3.4544 42 1 1.6465 2.3044 7.6747 43 1 1.0353 -2.0232 -1.0898 44 1 1.6080 -2.9070 -3.2979 45 1 5.0077 -2.8593 0.2684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677205670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:37 Heat of formation + Delta-G solvation = 161.601616 kcal Electronic energy + Delta-G solvation = -28910.256364 eV Core-core repulsion = 24968.133094 eV Total energy + Delta-G solvation = -3942.123270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.80301 -40.80087 -38.59824 -37.09673 -35.65339 -34.54808 -32.75586 -32.17049 -31.28454 -30.93740 -28.59607 -27.44979 -26.07612 -25.75274 -24.94110 -23.56259 -23.19928 -22.27692 -20.72776 -19.82367 -19.10653 -18.01725 -17.48850 -17.19767 -16.74412 -16.30491 -15.56807 -15.39663 -15.09918 -14.58681 -14.53872 -14.05763 -13.85778 -13.58324 -13.52678 -13.39117 -13.15299 -12.91332 -12.83327 -12.43607 -12.34494 -12.25976 -12.11820 -11.96653 -11.70461 -11.46171 -11.29142 -11.20748 -11.11515 -10.85250 -10.52799 -10.47381 -10.22527 -10.03901 -9.94117 -9.78949 -9.12250 -8.84588 -8.33152 -7.02672 -5.89252 -3.08003 -0.22526 -0.02906 1.18947 1.63313 2.29814 2.64756 2.88716 3.20996 3.39530 3.48319 3.50054 3.60114 3.92198 3.96381 4.35783 4.41250 4.49456 4.53033 4.78068 4.83132 4.92286 5.07633 5.13671 5.21223 5.26032 5.36435 5.38638 5.44747 5.53416 5.59227 5.60203 5.67233 5.81836 5.91957 6.02815 6.04623 6.17071 6.37823 6.55896 6.60399 6.83755 7.26228 7.30851 7.55865 7.82036 7.95283 7.97324 8.25498 9.13845 9.80991 10.23911 11.20112 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002972 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.201039 B = 9420.496108 C =10477.236806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 C -0.166 4.166 4 N -0.587 5.587 5 C 0.089 3.911 6 C 0.139 3.861 7 N -0.598 5.598 8 C 0.150 3.850 9 C -0.259 4.259 10 H 0.078 0.922 11 C 0.004 3.996 12 N -0.894 5.894 13 Si 0.887 3.113 14 H -0.288 1.288 15 H -0.294 1.294 16 H -0.278 1.278 17 C 0.561 3.439 18 O -0.512 6.512 19 C -0.137 4.137 20 C -0.038 4.038 21 C -0.096 4.096 22 C 0.249 3.751 23 N -0.325 5.325 24 N -0.006 5.006 25 N -0.103 5.103 26 N -0.303 5.303 27 C 0.166 3.834 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.010 0.990 40 H 0.072 0.928 41 H -0.002 1.002 42 H 0.253 0.747 43 H 0.168 0.832 44 H 0.174 0.826 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -3.648 -19.833 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 C -0.224 4.224 4 N -0.320 5.320 5 C -0.034 4.034 6 C 0.010 3.990 7 N -0.320 5.320 8 C 0.005 3.995 9 C -0.387 4.387 10 H 0.096 0.904 11 C -0.194 4.194 12 N -0.539 5.539 13 Si 0.717 3.283 14 H -0.216 1.216 15 H -0.220 1.220 16 H -0.204 1.204 17 C 0.345 3.655 18 O -0.387 6.387 19 C -0.146 4.146 20 C -0.064 4.064 21 C -0.119 4.119 22 C -0.006 4.006 23 N -0.184 5.184 24 N 0.001 4.999 25 N -0.086 5.086 26 N -0.081 5.081 27 C 0.036 3.964 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.091 0.909 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.185 0.815 44 H 0.191 0.809 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.719 -4.550 -19.965 20.657 hybrid contribution -0.131 0.247 1.453 1.480 sum -2.850 -4.304 -18.512 19.218 Atomic orbital electron populations 1.22252 0.94481 1.02499 1.03509 1.21606 0.94837 0.94604 0.88024 1.22281 1.01918 0.94999 1.03154 1.48193 1.54857 1.20219 1.08756 1.22795 1.01384 0.98639 0.80616 1.21268 0.95478 0.94596 0.87632 1.44154 1.65792 1.21222 1.00865 1.21055 0.94830 0.85841 0.97748 1.19296 1.27533 1.07671 0.84228 0.90379 1.24673 0.96965 1.00667 0.97100 1.70265 1.20995 1.40618 1.22015 0.86471 0.82098 0.77930 0.81817 1.21555 1.22045 1.20352 1.17585 0.79624 0.81590 0.86696 1.90918 1.52864 1.57407 1.37549 1.19887 0.93236 1.04296 0.97201 1.21673 1.00585 0.93405 0.90730 1.20318 0.91759 1.00495 0.99335 1.23097 0.93863 0.98183 0.85413 1.75175 1.00615 1.20973 1.21634 1.77891 1.07246 1.09069 1.05737 1.82902 1.01361 1.19982 1.04325 1.48792 1.10660 1.37964 1.10704 1.21645 0.97801 0.91934 0.84975 0.91061 0.91035 0.92208 0.88942 0.91908 0.91505 0.90777 0.90813 0.89325 0.93513 0.93543 0.97130 0.90937 0.98330 0.93664 0.81489 0.80892 0.79053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 8.79 37.16 0.33 -0.81 16 2 C 0.11 0.91 2.44 -67.93 -0.17 0.74 16 3 C -0.17 -1.41 7.89 37.16 0.29 -1.12 16 4 N -0.59 -7.03 2.40 -167.27 -0.40 -7.43 16 5 C 0.09 1.44 5.02 -4.05 -0.02 1.42 16 6 C 0.14 2.58 5.73 -4.04 -0.02 2.56 16 7 N -0.60 -14.13 2.93 -181.12 -0.53 -14.66 16 8 C 0.15 3.44 9.26 59.84 0.55 3.99 16 9 C -0.26 -6.96 9.66 -15.06 -0.15 -7.10 16 10 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 11 C 0.00 0.11 4.81 -17.43 -0.08 0.03 16 12 N -0.89 -25.21 10.84 55.49 0.60 -24.61 16 13 Si 0.89 21.53 29.65 -169.99 -5.04 16.49 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.56 7.17 7.25 -12.40 -0.09 7.08 16 18 O -0.51 -8.91 16.54 5.30 0.09 -8.82 16 19 C -0.14 -1.27 5.13 -105.34 -0.54 -1.81 16 20 C -0.04 -0.24 7.30 -39.18 -0.29 -0.52 16 21 C -0.10 -0.60 10.09 -39.47 -0.40 -1.00 16 22 C 0.25 2.57 8.02 -156.27 -1.25 1.31 16 23 N -0.32 -4.09 12.26 31.10 0.38 -3.71 16 24 N -0.01 -0.09 13.35 60.35 0.81 0.72 16 25 N -0.10 -1.37 13.99 60.35 0.84 -0.52 16 26 N -0.30 -3.40 3.92 -12.06 -0.05 -3.45 16 27 C 0.17 1.64 10.83 -16.51 -0.18 1.46 16 28 H 0.07 0.61 6.97 -51.93 -0.36 0.25 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 7.26 -51.93 -0.38 -0.02 16 31 H 0.09 0.56 4.04 -51.93 -0.21 0.35 16 32 H 0.06 0.58 7.85 -51.93 -0.41 0.17 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 35 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16 36 H 0.09 1.76 7.35 -51.93 -0.38 1.38 16 37 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 38 H 0.05 0.76 5.16 -51.93 -0.27 0.49 16 39 H 0.01 0.25 8.10 -51.93 -0.42 -0.17 16 40 H 0.07 1.86 6.04 -51.93 -0.31 1.55 16 41 H 0.00 -0.04 7.91 -51.93 -0.41 -0.45 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.17 0.66 5.28 -52.49 -0.28 0.38 16 44 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -33.04 365.25 -5.58 -38.61 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -5.77 Total: -4.36 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -2.01 Total: 6.23 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 1.65 Total: -53.66 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.04 Total: 16.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.04 -5.58 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677205670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.216 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds