Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47162 * 2 1 4 4 N 1.46503 * 109.47703 * 119.99786 * 2 1 3 5 5 C 1.46494 * 119.99852 * 292.96817 * 4 2 1 6 6 C 1.53000 * 109.46955 * 269.99222 * 5 4 2 7 7 N 1.46507 * 109.47149 * 180.02562 * 6 5 4 8 8 C 1.46496 * 120.00056 * 270.00408 * 7 6 5 9 9 C 1.36935 * 119.99525 * 90.00226 * 7 6 5 10 10 H 1.08001 * 120.00285 * 3.05081 * 9 7 6 11 11 C 1.38812 * 119.99570 * 183.04795 * 9 7 6 12 12 N 1.31615 * 120.00406 * 31.09027 * 11 9 7 13 13 Si 1.86800 * 119.99953 * 211.08336 * 11 9 7 14 14 H 1.48498 * 109.47068 * 94.99745 * 13 11 9 15 15 H 1.48501 * 109.47338 * 214.99930 * 13 11 9 16 16 H 1.48507 * 109.47283 * 334.99720 * 13 11 9 17 17 C 1.34776 * 119.99695 * 112.95917 * 4 2 1 18 18 O 1.21574 * 119.99654 * 185.69991 * 17 4 2 19 19 C 1.47689 * 120.00308 * 5.70746 * 17 4 2 20 20 C 1.41599 * 120.03155 * 313.49070 * 19 17 4 21 21 C 1.35783 * 119.55003 * 180.23050 * 20 19 17 22 22 C 1.40863 * 119.38916 * 359.50795 * 21 20 19 23 23 N 1.32482 * 133.41626 * 180.19898 * 22 21 20 24 24 N 1.28540 * 110.24037 * 180.26806 * 23 22 21 25 25 N 1.28984 * 110.84392 * 359.97438 * 24 23 22 26 26 N 1.36936 * 119.93035 * 0.49165 * 22 21 20 27 27 C 1.35501 * 120.84233 * 359.76088 * 26 22 21 28 28 H 1.09003 * 109.46881 * 299.99469 * 1 2 3 29 29 H 1.08992 * 109.47150 * 59.99768 * 1 2 3 30 30 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47178 * 240.00094 * 2 1 3 32 32 H 1.08994 * 109.47253 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46869 * 300.00568 * 3 2 1 34 34 H 1.08996 * 109.47212 * 59.99936 * 3 2 1 35 35 H 1.09001 * 109.47781 * 29.99454 * 5 4 2 36 36 H 1.09000 * 109.47356 * 149.99697 * 5 4 2 37 37 H 1.08999 * 109.47611 * 300.00146 * 6 5 4 38 38 H 1.08997 * 109.47248 * 60.00595 * 6 5 4 39 39 H 1.09004 * 109.47092 * 89.04416 * 8 7 6 40 40 H 1.09002 * 109.46846 * 209.03878 * 8 7 6 41 41 H 1.09001 * 109.47094 * 329.03827 * 8 7 6 42 42 H 0.96997 * 120.00571 * 180.02562 * 12 11 9 43 43 H 1.07998 * 120.22767 * 359.95772 * 20 19 17 44 44 H 1.07995 * 120.30509 * 179.74929 * 21 20 19 45 45 H 1.07998 * 119.81995 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1962 5 6 1.7959 -0.1067 2.5212 6 6 2.9707 0.8053 2.8804 7 7 2.7485 1.3888 4.2058 8 6 2.0375 2.6631 4.3353 9 6 3.2054 0.7429 5.3235 10 1 3.7723 -0.1711 5.2252 11 6 2.9400 1.2630 6.5828 12 7 1.8318 1.9406 6.7948 13 14 4.1557 1.0012 7.9767 14 1 5.0602 2.1751 8.0716 15 1 3.4166 0.8411 9.2547 16 1 4.9569 -0.2209 7.7118 17 6 2.6724 -1.8631 1.0775 18 8 2.9864 -2.4873 2.0724 19 6 3.0076 -2.3895 -0.2610 20 6 2.0288 -2.3993 -1.2842 21 6 2.3463 -2.8899 -2.5099 22 6 3.6488 -3.3717 -2.7455 23 7 4.2487 -3.8938 -3.8051 24 7 5.4670 -4.1924 -3.5242 25 7 5.7416 -3.8955 -2.2994 26 7 4.5773 -3.3512 -1.7392 27 6 4.2626 -2.8672 -0.5134 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.8741 0.4749 2.5119 36 1 1.7154 -0.9035 3.2605 37 1 3.8926 0.2238 2.8898 38 1 3.0513 1.6022 2.1412 39 1 0.9675 2.4748 4.4232 40 1 2.3886 3.1862 5.2248 41 1 2.2275 3.2763 3.4544 42 1 1.6465 2.3044 7.6747 43 1 1.0353 -2.0232 -1.0898 44 1 1.6080 -2.9070 -3.2979 45 1 5.0077 -2.8593 0.2684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677205670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = 140.272760 kcal Electronic energy + Delta-G solvation = -28911.181253 eV Core-core repulsion = 24968.133094 eV Total energy + Delta-G solvation = -3943.048159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.65214 -41.77829 -39.50086 -38.24189 -37.28473 -35.35321 -33.95837 -33.31592 -32.62335 -31.79251 -30.01602 -28.10328 -27.91418 -26.90171 -25.69223 -25.02032 -24.05728 -23.13066 -22.38406 -20.75075 -20.01216 -18.89309 -18.71704 -18.30765 -18.05082 -17.30455 -16.96630 -16.34935 -16.14500 -15.96198 -15.46068 -15.25703 -15.09290 -14.89239 -14.60698 -14.49159 -14.21868 -13.95286 -13.84395 -13.74672 -13.33834 -13.12834 -13.02370 -12.95126 -12.85459 -12.78425 -12.70496 -12.36773 -12.35184 -12.13600 -12.07884 -11.94003 -11.87545 -11.52433 -11.37243 -10.97581 -10.49148 -9.96192 -9.80066 -8.94131 -7.96569 -5.15434 -1.02755 -0.71216 0.35753 0.72618 1.40307 1.44197 1.48001 1.55512 1.72437 1.99618 2.45925 2.51867 2.83502 3.12817 3.16733 3.26822 3.62616 3.71210 3.76921 3.88147 3.99843 4.15050 4.17173 4.30355 4.37528 4.49055 4.53969 4.62787 4.63543 4.74231 4.84255 4.87272 4.91594 4.93253 5.01604 5.05916 5.07615 5.14683 5.35112 5.46027 5.47030 5.51228 5.61466 5.73549 6.24157 6.30665 6.92762 7.05765 7.11009 7.86708 8.23599 9.11375 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002972 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.201039 B = 9420.496108 C =10477.236806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 C -0.168 4.168 4 N -0.582 5.582 5 C 0.111 3.889 6 C 0.142 3.858 7 N -0.615 5.615 8 C 0.163 3.837 9 C -0.265 4.265 10 H 0.065 0.935 11 C -0.042 4.042 12 N -0.919 5.919 13 Si 0.944 3.056 14 H -0.286 1.286 15 H -0.295 1.295 16 H -0.277 1.277 17 C 0.562 3.438 18 O -0.566 6.566 19 C -0.125 4.125 20 C -0.025 4.025 21 C -0.069 4.069 22 C 0.240 3.760 23 N -0.340 5.340 24 N -0.025 5.025 25 N -0.130 5.130 26 N -0.304 5.304 27 C 0.155 3.845 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.027 0.973 38 H 0.076 0.924 39 H -0.004 1.004 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.251 0.749 43 H 0.202 0.798 44 H 0.219 0.781 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -3.058 -22.585 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.006 3.994 3 C -0.225 4.225 4 N -0.313 5.313 5 C -0.014 4.014 6 C 0.015 3.985 7 N -0.338 5.338 8 C 0.018 3.982 9 C -0.395 4.395 10 H 0.083 0.917 11 C -0.238 4.238 12 N -0.566 5.566 13 Si 0.773 3.227 14 H -0.213 1.213 15 H -0.222 1.222 16 H -0.202 1.202 17 C 0.348 3.652 18 O -0.445 6.445 19 C -0.134 4.134 20 C -0.051 4.051 21 C -0.091 4.091 22 C -0.012 4.012 23 N -0.200 5.200 24 N -0.018 5.018 25 N -0.113 5.113 26 N -0.083 5.083 27 C 0.025 3.975 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.014 0.986 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.219 0.781 44 H 0.236 0.764 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.409 -3.953 -22.781 23.539 hybrid contribution 0.341 0.079 2.233 2.260 sum -4.069 -3.874 -20.549 21.303 Atomic orbital electron populations 1.22281 0.92759 1.03518 1.04063 1.22012 0.96149 0.94361 0.86838 1.22298 1.01366 0.95172 1.03697 1.48146 1.54497 1.20093 1.08555 1.22074 1.00403 0.96816 0.82090 1.21367 0.95409 0.95522 0.86205 1.44312 1.66066 1.21715 1.01746 1.20838 0.93613 0.85742 0.98028 1.19407 1.27114 1.07316 0.85648 0.91733 1.25262 0.98143 1.01402 0.99026 1.70354 1.21992 1.41992 1.22235 0.85590 0.80093 0.77725 0.79283 1.21282 1.22239 1.20224 1.17992 0.78500 0.81274 0.87386 1.90905 1.54811 1.59035 1.39764 1.19569 0.93776 1.03980 0.96038 1.21950 1.00900 0.92815 0.89443 1.20869 0.90367 0.97752 1.00160 1.23724 0.94944 0.98009 0.84566 1.75078 1.00460 1.21713 1.22791 1.77859 1.08068 1.09784 1.06076 1.82845 1.02658 1.21384 1.04457 1.48716 1.10520 1.37932 1.11089 1.21618 0.98401 0.92701 0.84784 0.93246 0.87780 0.91019 0.86035 0.92844 0.88380 0.92843 0.89912 0.93556 0.95427 0.90587 0.98604 0.93978 0.94574 0.93978 0.78113 0.76450 0.79404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.79 71.98 0.63 -0.87 16 2 C 0.11 1.32 2.44 44.99 0.11 1.43 16 3 C -0.17 -2.25 7.89 71.98 0.57 -1.69 16 4 N -0.58 -13.01 2.40 -801.38 -1.92 -14.93 16 5 C 0.11 3.60 5.02 86.38 0.43 4.04 16 6 C 0.14 5.29 5.73 86.38 0.50 5.79 16 7 N -0.61 -29.47 2.93 -726.92 -2.13 -31.60 16 8 C 0.16 7.45 9.26 127.77 1.18 8.64 16 9 C -0.27 -14.64 9.66 84.03 0.81 -13.82 16 10 H 0.06 3.66 7.99 -2.91 -0.02 3.63 16 11 C -0.04 -2.37 4.81 84.86 0.41 -1.96 16 12 N -0.92 -52.95 10.84 21.65 0.23 -52.72 16 13 Si 0.94 45.24 29.65 68.60 2.03 47.28 16 14 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 17 C 0.56 13.91 7.25 86.74 0.63 14.53 16 18 O -0.57 -20.32 16.54 -3.95 -0.07 -20.38 16 19 C -0.12 -2.04 5.13 -20.33 -0.10 -2.14 16 20 C -0.03 -0.19 7.30 22.53 0.16 -0.03 16 21 C -0.07 -0.52 10.09 22.34 0.23 -0.29 16 22 C 0.24 4.34 8.02 134.16 1.08 5.42 16 23 N -0.34 -8.06 12.26 -55.52 -0.68 -8.75 16 24 N -0.02 -0.68 13.35 37.02 0.49 -0.19 16 25 N -0.13 -3.49 13.99 37.02 0.52 -2.97 16 26 N -0.30 -6.53 3.92 -192.06 -0.75 -7.28 16 27 C 0.15 2.93 10.83 83.75 0.91 3.84 16 28 H 0.05 0.70 6.97 -2.39 -0.02 0.68 16 29 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.50 7.26 -2.39 -0.02 0.48 16 31 H 0.12 0.81 4.04 -2.38 -0.01 0.81 16 32 H 0.05 0.83 7.85 -2.39 -0.02 0.81 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.96 6.40 -2.39 -0.02 0.95 16 35 H 0.08 2.55 6.73 -2.39 -0.02 2.53 16 36 H 0.05 1.92 7.35 -2.39 -0.02 1.90 16 37 H 0.03 1.12 8.04 -2.39 -0.02 1.10 16 38 H 0.08 2.37 5.16 -2.39 -0.01 2.36 16 39 H 0.00 -0.21 8.10 -2.38 -0.02 -0.23 16 40 H 0.04 2.18 6.04 -2.39 -0.01 2.16 16 41 H 0.04 1.35 7.91 -2.39 -0.02 1.33 16 42 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.20 0.27 5.28 -2.91 -0.02 0.26 16 44 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16 45 H 0.19 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -77.17 365.25 6.30 -70.87 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: 1.03 Total: -2.21 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 7.54 Total: 22.88 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -4.24 Total: -118.43 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.07 Total: -20.38 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.17 6.30 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677205670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.144 kcal (2) G-P(sol) polarization free energy of solvation -77.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds