Wall clock time and date at job start Tue Mar 31 2020 18:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46556 * 2 1 4 4 C 1.52995 * 109.47165 * 239.99573 * 2 1 3 5 5 C 1.53000 * 109.46970 * 174.99696 * 4 2 1 6 6 N 1.46504 * 109.46816 * 180.02562 * 5 4 2 7 7 C 1.34776 * 119.99858 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00040 * 359.97438 * 7 6 5 9 9 C 1.47244 * 120.00452 * 180.02562 * 7 6 5 10 10 C 1.38036 * 126.81094 * 0.17020 * 9 7 6 11 11 N 1.34093 * 107.87667 * 180.24738 * 10 9 7 12 12 H 0.96998 * 125.15888 * 179.72524 * 11 10 9 13 13 N 1.39769 * 109.68358 * 359.74223 * 11 10 9 14 14 C 1.31338 * 109.09284 * 0.02562 * 13 11 10 15 15 C 1.48380 * 126.50911 * 179.97438 * 14 13 11 16 16 C 1.40880 * 126.22408 * 145.00476 * 15 14 13 17 17 N 1.30663 * 108.09219 * 180.02562 * 16 15 14 18 18 N 1.40015 * 108.53791 * 359.97438 * 17 16 15 19 19 C 1.46495 * 125.88665 * 179.73706 * 18 17 16 20 20 C 1.34821 * 108.22271 * 0.02562 * 18 17 16 21 21 N 1.46503 * 109.46660 * 119.99549 * 2 1 3 22 22 C 1.36931 * 120.00135 * 274.99675 * 21 2 1 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99879 * 180.02562 * 22 21 2 25 25 N 1.31614 * 120.00307 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99948 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47258 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47350 * 120.00260 * 26 24 22 29 29 H 1.48506 * 109.47190 * 239.99962 * 26 24 22 30 30 H 1.08994 * 109.47517 * 60.00186 * 1 2 3 31 31 H 1.09005 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47251 * 299.99907 * 1 2 3 33 33 H 1.09007 * 109.47222 * 55.00169 * 4 2 1 34 34 H 1.08996 * 109.47545 * 295.00346 * 4 2 1 35 35 H 1.08997 * 109.46946 * 60.00951 * 5 4 2 36 36 H 1.08996 * 109.47246 * 299.99933 * 5 4 2 37 37 H 0.96996 * 120.00459 * 0.02562 * 6 5 4 38 38 H 1.08008 * 126.06089 * 359.95377 * 10 9 7 39 39 H 1.08000 * 125.95874 * 359.97438 * 16 15 14 40 40 H 1.09007 * 109.47244 * 90.02741 * 19 18 17 41 41 H 1.09004 * 109.47110 * 210.01897 * 19 18 17 42 42 H 1.08997 * 109.47750 * 330.02605 * 19 18 17 43 43 H 1.07998 * 126.19792 * 179.97438 * 20 18 17 44 44 H 0.97003 * 119.99603 * 95.00452 * 21 2 1 45 45 H 0.97001 * 120.00597 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 7 4.0531 -1.3035 -2.5101 7 6 5.3740 -1.3396 -2.7753 8 8 6.1607 -0.7987 -2.0216 9 6 5.8648 -2.0327 -3.9781 10 6 5.1023 -2.6855 -4.9256 11 7 5.9343 -3.1836 -5.8517 12 1 5.6621 -3.6933 -6.6308 13 7 7.2532 -2.8571 -5.5240 14 6 7.2597 -2.1639 -4.4085 15 6 8.4531 -1.6216 -3.7131 16 6 8.5229 -0.4058 -3.0048 17 7 9.7363 -0.2777 -2.5372 18 7 10.4830 -1.3971 -2.9244 19 6 11.8926 -1.6402 -2.6083 20 6 9.6827 -2.2096 -3.6435 21 7 2.0182 -0.6905 1.1963 22 6 2.1490 -0.0074 2.3758 23 1 1.8919 1.0405 2.4243 24 6 2.6122 -0.6616 3.5091 25 7 2.9260 -1.9384 3.4499 26 14 2.7899 0.2702 5.1183 27 1 2.3752 1.6824 4.9210 28 1 1.9297 -0.3591 6.1524 29 1 4.2069 0.2282 5.5608 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2055 35 1 3.9994 -1.0728 -0.4259 36 1 3.8531 0.4370 -1.3573 37 1 3.4258 -1.7345 -3.1114 38 1 4.0266 -2.7825 -4.9193 39 1 7.7147 0.2982 -2.8722 40 1 11.9653 -2.1844 -1.6666 41 1 12.3470 -2.2299 -3.4045 42 1 12.4145 -0.6875 -2.5186 43 1 9.9639 -3.1544 -4.0847 44 1 2.2490 -1.6317 1.1527 45 1 3.2500 -2.3955 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690874985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:18 Heat of formation + Delta-G solvation = 124.557505 kcal Electronic energy + Delta-G solvation = -27534.338435 eV Core-core repulsion = 23590.608811 eV Total energy + Delta-G solvation = -3943.729624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43895 -40.75095 -38.88053 -36.47222 -34.30881 -33.56846 -32.25557 -32.19571 -30.72874 -29.55700 -28.97592 -27.90207 -26.85462 -24.06918 -23.32291 -22.67197 -22.03167 -21.08076 -20.12071 -19.69398 -19.34966 -18.52918 -17.16976 -16.83148 -16.28523 -15.56777 -15.43051 -15.28252 -14.92067 -14.70997 -14.37767 -14.29502 -13.78777 -13.67398 -13.43469 -13.07192 -12.99735 -12.83940 -12.68151 -12.42819 -12.41264 -11.99559 -11.49029 -11.14216 -11.00619 -10.86448 -10.78480 -10.68320 -10.57484 -10.22527 -10.15733 -9.92968 -9.63393 -9.57676 -9.31525 -9.00630 -8.86052 -8.63340 -8.17539 -6.89052 -5.69399 -2.97752 1.38945 1.50890 2.15797 2.38307 2.58061 3.11097 3.49279 3.49530 3.55294 3.57350 3.66488 4.23735 4.45412 4.52763 4.66362 4.74458 4.95890 5.03932 5.20987 5.22374 5.26600 5.41851 5.43823 5.46219 5.62536 5.63752 5.76081 5.94312 5.95101 6.12744 6.22470 6.25224 6.41893 6.45667 6.57054 6.69637 6.77033 6.82999 6.87609 6.91375 6.92092 7.10736 7.34809 7.73896 7.78171 7.83062 8.48902 8.58887 9.60497 10.17423 10.51817 11.53315 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.002850 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.390392 B = 9820.503366 C =11840.290950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.125 3.875 6 N -0.727 5.727 7 C 0.587 3.413 8 O -0.531 6.531 9 C -0.277 4.277 10 C 0.104 3.896 11 N -0.468 5.468 12 H 0.442 0.558 13 N -0.299 5.299 14 C 0.221 3.779 15 C -0.178 4.178 16 C 0.119 3.881 17 N -0.304 5.304 18 N -0.379 5.379 19 C 0.103 3.897 20 C 0.089 3.911 21 N -0.723 5.723 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.390 0.610 38 H 0.186 0.814 39 H 0.196 0.804 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.176 0.824 44 H 0.383 0.617 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.627 -3.918 -23.319 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C 0.002 3.998 6 N -0.378 5.378 7 C 0.374 3.626 8 O -0.408 6.408 9 C -0.292 4.292 10 C -0.047 4.047 11 N -0.173 5.173 12 H 0.286 0.714 13 N -0.121 5.121 14 C 0.051 3.949 15 C -0.192 4.192 16 C -0.069 4.069 17 N -0.124 5.124 18 N -0.159 5.159 19 C -0.039 4.039 20 C -0.061 4.061 21 N -0.365 5.365 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.223 0.777 38 H 0.203 0.797 39 H 0.213 0.787 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.193 0.807 44 H 0.217 0.783 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.889 -3.174 -22.805 25.469 hybrid contribution -1.594 -0.798 0.410 1.829 sum 9.295 -3.972 -22.394 24.570 Atomic orbital electron populations 1.22429 0.99255 1.00756 0.99915 1.20151 0.91783 0.95630 0.86083 0.93270 1.22053 0.94136 1.01650 0.99224 1.21426 0.94110 0.97193 0.87075 1.45940 1.06737 1.57574 1.27574 1.17124 0.82165 0.79497 0.83842 1.90782 1.54830 1.46110 1.49086 1.21404 0.92480 1.14225 1.01104 1.23000 0.97326 0.94788 0.89558 1.45854 1.04256 1.44625 1.22553 0.71439 1.77319 0.96673 1.21664 1.16416 1.20871 0.90946 0.92901 0.90133 1.17606 0.91160 0.99214 1.11220 1.24228 0.94032 0.96307 0.92360 1.77396 1.05069 1.06132 1.23790 1.48400 1.10401 1.16013 1.41049 1.21851 0.76395 1.03501 1.02127 1.22460 0.90523 0.97014 0.96121 1.42454 1.78055 1.10646 1.05352 1.19258 1.36282 0.93842 0.87308 0.91185 1.24714 1.02220 0.95952 0.98027 1.69660 1.51012 1.08689 1.28707 0.86163 0.77312 0.78817 0.84186 1.20578 1.22046 1.21900 0.94614 0.93585 0.92776 0.92023 0.91724 0.89716 0.91763 0.77668 0.79692 0.78703 0.90633 0.89604 0.89187 0.80678 0.78298 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.95 4.87 -26.73 -0.13 -2.08 16 5 C 0.12 2.03 5.56 -4.04 -0.02 2.01 16 6 N -0.73 -9.50 5.55 -61.44 -0.34 -9.84 16 7 C 0.59 8.91 7.81 -12.60 -0.10 8.81 16 8 O -0.53 -10.16 12.94 5.25 0.07 -10.09 16 9 C -0.28 -3.46 6.31 -102.95 -0.65 -4.11 16 10 C 0.10 0.82 11.50 -16.64 -0.19 0.63 16 11 N -0.47 -3.62 7.20 30.82 0.22 -3.40 16 12 H 0.44 1.68 8.96 -182.85 -1.64 0.04 16 13 N -0.30 -3.48 12.65 34.58 0.44 -3.04 16 14 C 0.22 2.97 7.27 -80.54 -0.59 2.38 16 15 C -0.18 -2.54 5.82 -105.36 -0.61 -3.15 16 16 C 0.12 1.88 10.12 -17.05 -0.17 1.70 16 17 N -0.30 -4.77 12.54 30.81 0.39 -4.39 16 18 N -0.38 -4.64 4.00 -67.89 -0.27 -4.91 16 19 C 0.10 0.74 11.46 59.84 0.69 1.42 16 20 C 0.09 1.05 11.45 -16.87 -0.19 0.86 16 21 N -0.72 -17.69 4.57 -53.43 -0.24 -17.93 16 22 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 26 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.76 7.75 -51.93 -0.40 1.36 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.39 3.58 7.43 -40.82 -0.30 3.27 16 38 H 0.19 0.63 7.48 -52.48 -0.39 0.24 16 39 H 0.20 3.16 6.37 -52.49 -0.33 2.83 16 40 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.38 10.02 7.80 -40.82 -0.32 9.71 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -38.00 384.71 -7.89 -45.89 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.58 Total: 9.88 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.06 Total: 1.95 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: 0.91 Total: -71.28 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.00 -7.89 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690874985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.444 kcal (2) G-P(sol) polarization free energy of solvation -37.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds