Wall clock time and date at job start Tue Mar 31 2020 18:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46556 * 2 1 4 4 C 1.52995 * 109.47165 * 239.99573 * 2 1 3 5 5 C 1.53000 * 109.46970 * 174.99696 * 4 2 1 6 6 N 1.46504 * 109.46816 * 180.02562 * 5 4 2 7 7 C 1.34776 * 119.99858 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00040 * 359.97438 * 7 6 5 9 9 C 1.47244 * 120.00452 * 180.02562 * 7 6 5 10 10 C 1.38036 * 126.81094 * 0.17020 * 9 7 6 11 11 N 1.34093 * 107.87667 * 180.24738 * 10 9 7 12 12 H 0.96998 * 125.15888 * 179.72524 * 11 10 9 13 13 N 1.39769 * 109.68358 * 359.74223 * 11 10 9 14 14 C 1.31338 * 109.09284 * 0.02562 * 13 11 10 15 15 C 1.48380 * 126.50911 * 179.97438 * 14 13 11 16 16 C 1.40880 * 126.22408 * 145.00476 * 15 14 13 17 17 N 1.30663 * 108.09219 * 180.02562 * 16 15 14 18 18 N 1.40015 * 108.53791 * 359.97438 * 17 16 15 19 19 C 1.46495 * 125.88665 * 179.73706 * 18 17 16 20 20 C 1.34821 * 108.22271 * 0.02562 * 18 17 16 21 21 N 1.46503 * 109.46660 * 119.99549 * 2 1 3 22 22 C 1.36931 * 120.00135 * 274.99675 * 21 2 1 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99879 * 180.02562 * 22 21 2 25 25 N 1.31614 * 120.00307 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99948 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47258 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47350 * 120.00260 * 26 24 22 29 29 H 1.48506 * 109.47190 * 239.99962 * 26 24 22 30 30 H 1.08994 * 109.47517 * 60.00186 * 1 2 3 31 31 H 1.09005 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47251 * 299.99907 * 1 2 3 33 33 H 1.09007 * 109.47222 * 55.00169 * 4 2 1 34 34 H 1.08996 * 109.47545 * 295.00346 * 4 2 1 35 35 H 1.08997 * 109.46946 * 60.00951 * 5 4 2 36 36 H 1.08996 * 109.47246 * 299.99933 * 5 4 2 37 37 H 0.96996 * 120.00459 * 0.02562 * 6 5 4 38 38 H 1.08008 * 126.06089 * 359.95377 * 10 9 7 39 39 H 1.08000 * 125.95874 * 359.97438 * 16 15 14 40 40 H 1.09007 * 109.47244 * 90.02741 * 19 18 17 41 41 H 1.09004 * 109.47110 * 210.01897 * 19 18 17 42 42 H 1.08997 * 109.47750 * 330.02605 * 19 18 17 43 43 H 1.07998 * 126.19792 * 179.97438 * 20 18 17 44 44 H 0.97003 * 119.99603 * 95.00452 * 21 2 1 45 45 H 0.97001 * 120.00597 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 7 4.0531 -1.3035 -2.5101 7 6 5.3740 -1.3396 -2.7753 8 8 6.1607 -0.7987 -2.0216 9 6 5.8648 -2.0327 -3.9781 10 6 5.1023 -2.6855 -4.9256 11 7 5.9343 -3.1836 -5.8517 12 1 5.6621 -3.6933 -6.6308 13 7 7.2532 -2.8571 -5.5240 14 6 7.2597 -2.1639 -4.4085 15 6 8.4531 -1.6216 -3.7131 16 6 8.5229 -0.4058 -3.0048 17 7 9.7363 -0.2777 -2.5372 18 7 10.4830 -1.3971 -2.9244 19 6 11.8926 -1.6402 -2.6083 20 6 9.6827 -2.2096 -3.6435 21 7 2.0182 -0.6905 1.1963 22 6 2.1490 -0.0074 2.3758 23 1 1.8919 1.0405 2.4243 24 6 2.6122 -0.6616 3.5091 25 7 2.9260 -1.9384 3.4499 26 14 2.7899 0.2702 5.1183 27 1 2.3752 1.6824 4.9210 28 1 1.9297 -0.3591 6.1524 29 1 4.2069 0.2282 5.5608 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2055 35 1 3.9994 -1.0728 -0.4259 36 1 3.8531 0.4370 -1.3573 37 1 3.4258 -1.7345 -3.1114 38 1 4.0266 -2.7825 -4.9193 39 1 7.7147 0.2982 -2.8722 40 1 11.9653 -2.1844 -1.6666 41 1 12.3470 -2.2299 -3.4045 42 1 12.4145 -0.6875 -2.5186 43 1 9.9639 -3.1544 -4.0847 44 1 2.2490 -1.6317 1.1527 45 1 3.2500 -2.3955 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690874985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:16 Heat of formation + Delta-G solvation = 94.418118 kcal Electronic energy + Delta-G solvation = -27535.645376 eV Core-core repulsion = 23590.608811 eV Total energy + Delta-G solvation = -3945.036565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.33939 -41.64776 -40.05058 -38.02026 -35.72828 -34.47369 -34.08115 -33.08969 -31.83665 -30.64538 -30.46743 -29.23856 -27.64361 -25.86580 -24.69079 -23.56332 -23.18496 -22.12340 -21.48460 -20.72519 -20.38726 -19.44954 -19.14145 -17.70452 -17.31631 -16.89812 -16.49312 -16.44835 -16.26371 -15.77278 -15.59745 -15.32834 -15.22034 -15.14310 -14.76422 -14.27980 -14.12695 -13.82701 -13.76334 -13.52786 -13.45660 -13.21691 -13.17821 -12.83849 -12.58003 -12.20051 -12.16401 -12.05132 -11.96381 -11.80039 -11.58757 -11.53857 -11.01544 -10.93720 -10.79044 -10.34945 -10.04554 -9.69787 -9.10443 -8.93442 -7.90093 -5.15871 0.57911 0.65345 1.11619 1.46155 1.48350 1.56899 1.61429 1.88245 2.06886 2.40070 2.59104 2.60933 3.43030 3.44577 3.64009 3.91329 3.95158 3.98739 4.10613 4.25034 4.32865 4.40454 4.43213 4.44480 4.48569 4.59357 4.68904 4.74074 4.75526 4.86169 4.96253 4.98140 5.10774 5.17662 5.29798 5.36449 5.46662 5.57495 5.58638 5.65408 5.68318 6.07270 6.33450 6.35309 6.53741 6.70098 6.83946 7.39427 7.51547 8.18858 8.39283 9.33710 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.002850 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.390392 B = 9820.503366 C =11840.290950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.137 3.863 6 N -0.710 5.710 7 C 0.582 3.418 8 O -0.583 6.583 9 C -0.319 4.319 10 C 0.146 3.854 11 N -0.447 5.447 12 H 0.462 0.538 13 N -0.312 5.312 14 C 0.202 3.798 15 C -0.203 4.203 16 C 0.100 3.900 17 N -0.342 5.342 18 N -0.376 5.376 19 C 0.091 3.909 20 C 0.098 3.902 21 N -0.735 5.735 22 C -0.228 4.228 23 H 0.073 0.927 24 C -0.079 4.079 25 N -0.970 5.970 26 Si 0.963 3.037 27 H -0.266 1.266 28 H -0.293 1.293 29 H -0.300 1.300 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.030 0.970 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.049 0.951 37 H 0.414 0.586 38 H 0.240 0.760 39 H 0.177 0.823 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.212 0.788 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 -5.006 -26.372 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.013 3.987 6 N -0.362 5.362 7 C 0.371 3.629 8 O -0.464 6.464 9 C -0.335 4.335 10 C -0.006 4.006 11 N -0.154 5.154 12 H 0.311 0.689 13 N -0.134 5.134 14 C 0.033 3.967 15 C -0.217 4.217 16 C -0.087 4.087 17 N -0.164 5.164 18 N -0.157 5.157 19 C -0.048 4.048 20 C -0.052 4.052 21 N -0.375 5.375 22 C -0.360 4.360 23 H 0.091 0.909 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.190 1.190 28 H -0.220 1.220 29 H -0.228 1.228 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.251 0.749 38 H 0.256 0.744 39 H 0.193 0.807 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.229 0.771 44 H 0.204 0.796 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.567 -4.251 -25.949 27.981 hybrid contribution -1.186 -0.470 1.202 1.753 sum 8.381 -4.721 -24.747 26.551 Atomic orbital electron populations 1.22258 0.97108 1.01058 1.00813 1.20482 0.93149 0.95188 0.85806 0.94151 1.21901 0.92457 1.02084 0.98773 1.21025 0.95175 0.95998 0.86484 1.45614 1.06694 1.57144 1.26735 1.17614 0.82176 0.78861 0.84245 1.90765 1.56203 1.48385 1.51078 1.21226 0.93034 1.17272 1.01921 1.23629 0.99058 0.90987 0.86957 1.45916 1.03134 1.43458 1.22858 0.68934 1.77249 0.98771 1.21710 1.15688 1.20909 0.91191 0.93723 0.90854 1.17891 0.92828 0.99038 1.11962 1.24038 0.93868 0.97238 0.93559 1.77265 1.05606 1.08439 1.25054 1.48789 1.11761 1.14927 1.40180 1.22274 0.74001 1.04474 1.04030 1.22987 0.89639 0.97596 0.95005 1.42660 1.78316 1.10240 1.06310 1.19625 1.33934 0.94021 0.88456 0.90887 1.25456 1.03524 0.96869 1.01265 1.69807 1.53126 1.10162 1.29037 0.85203 0.76487 0.78403 0.80543 1.19007 1.22029 1.22829 0.90487 0.93545 0.95091 0.87402 0.90829 0.95072 0.93304 0.74898 0.74418 0.80663 0.89869 0.85819 0.88908 0.77096 0.79642 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 9.49 71.98 0.68 -4.21 16 2 C 0.16 5.97 2.89 44.99 0.13 6.10 16 3 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 4 C -0.11 -3.11 4.87 30.59 0.15 -2.96 16 5 C 0.14 4.53 5.56 86.38 0.48 5.01 16 6 N -0.71 -17.80 5.55 -466.54 -2.59 -20.39 16 7 C 0.58 18.03 7.81 86.61 0.68 18.70 16 8 O -0.58 -24.12 12.94 -4.13 -0.05 -24.18 16 9 C -0.32 -7.65 6.31 -18.78 -0.12 -7.77 16 10 C 0.15 1.74 11.50 84.30 0.97 2.71 16 11 N -0.45 -5.24 7.20 -56.41 -0.41 -5.65 16 12 H 0.46 1.42 8.96 -213.54 -1.91 -0.50 16 13 N -0.31 -6.65 12.65 -44.49 -0.56 -7.21 16 14 C 0.20 5.37 7.27 44.10 0.32 5.69 16 15 C -0.20 -6.02 5.82 -20.34 -0.12 -6.14 16 16 C 0.10 3.45 10.12 85.51 0.87 4.31 16 17 N -0.34 -11.49 12.54 -56.44 -0.71 -12.20 16 18 N -0.38 -9.29 4.00 -368.69 -1.48 -10.76 16 19 C 0.09 1.22 11.46 127.77 1.46 2.68 16 20 C 0.10 2.30 11.45 83.82 0.96 3.26 16 21 N -0.73 -36.52 4.57 -322.94 -1.48 -38.00 16 22 C -0.23 -12.86 9.93 84.03 0.83 -12.02 16 23 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 25 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 26 Si 0.96 48.14 29.55 68.60 2.03 50.17 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 28 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.03 1.37 7.75 -2.39 -0.02 1.35 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.41 6.14 7.43 -92.71 -0.69 5.45 16 38 H 0.24 0.08 7.48 -2.91 -0.02 0.06 16 39 H 0.18 6.50 6.37 -2.91 -0.02 6.49 16 40 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.21 3.14 8.06 -2.91 -0.02 3.11 16 44 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 45 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -90.63 384.71 0.53 -90.10 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -2.27 Total: 27.94 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 7.76 Total: 11.14 kcal Atomic # 7 Polarization: -148.23 SS G_CDS: -6.93 Total: -155.17 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -90.63 0.53 -90.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690874985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.516 kcal (2) G-P(sol) polarization free energy of solvation -90.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds