Wall clock time and date at job start Tue Mar 31 2020 16:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.47102 * 2 1 4 4 C 1.42904 * 114.00086 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.28930 * 30.68220 * 4 3 2 6 6 C 1.54005 * 110.32380 * 268.54702 * 4 3 2 7 7 N 1.47485 * 107.24392 * 242.31459 * 6 4 3 8 8 C 1.34786 * 127.03052 * 154.61643 * 7 6 4 9 9 O 1.21282 * 119.99889 * 180.02562 * 8 7 6 10 10 C 1.50697 * 120.00123 * 0.02562 * 8 7 6 11 11 H 1.09000 * 115.54828 * 325.58603 * 10 8 7 12 12 C 1.53001 * 117.49756 * 111.25075 * 10 8 7 13 13 C 1.52997 * 117.50138 * 179.91202 * 10 8 7 14 14 H 1.09003 * 117.49464 * 0.02562 * 13 10 8 15 15 C 1.52999 * 117.49869 * 145.01875 * 13 10 8 16 16 F 1.39903 * 109.46948 * 180.02562 * 15 13 10 17 17 F 1.39899 * 109.47380 * 300.00403 * 15 13 10 18 18 C 1.48377 * 105.79701 * 334.78511 * 7 6 4 19 19 C 1.54616 * 110.32746 * 152.92610 * 4 3 2 20 20 H 1.09001 * 110.74249 * 22.22172 * 19 4 3 21 21 C 1.52999 * 110.73839 * 259.07630 * 19 4 3 22 22 N 1.46503 * 109.47039 * 174.99908 * 21 19 4 23 23 C 1.36932 * 120.00188 * 179.97438 * 22 21 19 24 24 H 1.08006 * 119.99597 * 0.02562 * 23 22 21 25 25 C 1.38805 * 120.00204 * 180.02562 * 23 22 21 26 26 N 1.31628 * 120.00260 * 180.02562 * 25 23 22 27 27 Si 1.86793 * 120.00130 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.47152 * 90.00249 * 27 25 23 29 29 H 1.48501 * 109.47538 * 210.00162 * 27 25 23 30 30 H 1.48502 * 109.47258 * 330.00458 * 27 25 23 31 31 H 1.09006 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47187 * 299.99786 * 1 2 3 33 33 H 1.09004 * 109.47222 * 60.00374 * 1 2 3 34 34 H 1.09001 * 109.46793 * 240.00107 * 2 1 3 35 35 H 1.09000 * 109.47022 * 120.00089 * 2 1 3 36 36 H 1.09002 * 109.91501 * 1.77436 * 6 4 3 37 37 H 1.08999 * 109.90987 * 122.86047 * 6 4 3 38 38 H 1.08998 * 117.50177 * 214.97840 * 12 10 8 39 39 H 1.08999 * 117.49579 * 0.02562 * 12 10 8 40 40 H 1.09002 * 109.47011 * 60.00743 * 15 13 10 41 41 H 1.09005 * 110.51886 * 280.62106 * 18 7 6 42 42 H 1.09006 * 110.83140 * 157.65823 * 18 7 6 43 43 H 1.08993 * 109.47040 * 294.99926 * 21 19 4 44 44 H 1.08996 * 109.46892 * 55.00553 * 21 19 4 45 45 H 0.97001 * 119.99785 * 0.02562 * 22 21 19 46 46 H 0.96993 * 120.00386 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8768 0.6135 -0.5226 6 6 3.9618 1.5386 1.4429 7 7 4.6262 2.8467 1.5938 8 6 4.8079 3.5378 2.7367 9 8 5.3751 4.6095 2.7135 10 6 4.3062 2.9788 4.0431 11 1 3.3804 2.4065 3.9850 12 6 5.3508 2.5304 5.0672 13 6 4.5449 3.8099 5.3053 14 1 5.0645 4.7613 5.1906 15 6 3.4660 3.7737 6.3895 16 9 3.8531 4.5872 7.4599 17 9 2.2582 4.2421 5.8614 18 6 5.0486 3.2451 0.2284 19 6 3.8640 2.7896 -0.6605 20 1 3.0533 3.5175 -0.6307 21 6 4.3259 2.5546 -2.1000 22 7 4.6157 3.8421 -2.7362 23 6 5.0484 3.8822 -4.0347 24 1 5.1757 2.9647 -4.5901 25 6 5.3234 5.1020 -4.6373 26 7 5.7389 5.1407 -5.8857 27 14 5.1026 6.6890 -3.6770 28 1 6.3707 7.0278 -2.9825 29 1 4.7410 7.7861 -4.6102 30 1 4.0207 6.5147 -2.6749 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.1342 1.4590 2.1478 37 1 4.6779 0.7360 1.6192 38 1 5.1121 1.6635 5.6832 39 1 6.4008 2.6402 4.7961 40 1 3.3367 2.7495 6.7394 41 1 5.9641 2.7259 -0.0551 42 1 5.1846 4.3247 0.1643 43 1 5.2261 1.9401 -2.0970 44 1 3.5391 2.0440 -2.6552 45 1 4.5017 4.6661 -2.2373 46 1 5.9308 5.9930 -6.3069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691318904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:52 Heat of formation + Delta-G solvation = -164.430497 kcal Electronic energy + Delta-G solvation = -29071.622370 eV Core-core repulsion = 24632.379349 eV Total energy + Delta-G solvation = -4439.243021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.90548 -47.95859 -41.50757 -39.98833 -37.99998 -37.43046 -36.56136 -34.04224 -32.59130 -31.53787 -29.44259 -28.67836 -27.38538 -25.54052 -24.08246 -23.81377 -23.01409 -22.46799 -21.58683 -20.34153 -19.66052 -18.93898 -18.25459 -18.07095 -17.91499 -17.20767 -17.16760 -16.61319 -16.54368 -16.22181 -15.81466 -15.61095 -15.19576 -14.87751 -14.81231 -14.68909 -14.36540 -14.32554 -14.26015 -14.00913 -13.80247 -13.50672 -13.40042 -13.21528 -13.04585 -12.95442 -12.74072 -12.45714 -12.28686 -12.13495 -12.03492 -11.98949 -11.84264 -11.77757 -11.62123 -11.61587 -11.10543 -11.01532 -10.56449 -9.79983 -9.33973 -8.06791 -5.39456 1.28257 1.34171 1.35439 1.41428 1.68840 2.43099 2.45417 2.65378 2.75594 3.15735 3.25399 3.32207 3.35867 3.42735 3.54443 3.69137 3.81043 3.91525 3.99406 4.08298 4.19043 4.19718 4.24977 4.27874 4.39212 4.48046 4.55231 4.60731 4.64743 4.68870 4.72419 4.77375 4.85903 4.93866 4.97686 5.01747 5.08801 5.12357 5.20945 5.35392 5.72427 6.17631 6.33150 6.40907 6.97509 7.03344 7.79783 7.96427 9.14621 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.003222 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.347761 B = 8688.842201 C =10525.936130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.397 6.397 4 C 0.090 3.910 5 H 0.106 0.894 6 C 0.083 3.917 7 N -0.613 5.613 8 C 0.550 3.450 9 O -0.592 6.592 10 C -0.168 4.168 11 H 0.160 0.840 12 C -0.091 4.091 13 C -0.211 4.211 14 H 0.104 0.896 15 C 0.295 3.705 16 F -0.215 7.215 17 F -0.220 7.220 18 C 0.113 3.887 19 C -0.100 4.100 20 H 0.072 0.928 21 C 0.169 3.831 22 N -0.761 5.761 23 C -0.229 4.229 24 H 0.066 0.934 25 C -0.057 4.057 26 N -0.980 5.980 27 Si 0.944 3.056 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.262 1.262 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.163 0.837 39 H 0.104 0.896 40 H 0.168 0.832 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.362 0.638 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 -17.311 28.401 34.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.316 6.316 4 C 0.031 3.969 5 H 0.124 0.876 6 C -0.039 4.039 7 N -0.345 5.345 8 C 0.341 3.659 9 O -0.473 6.473 10 C -0.189 4.189 11 H 0.178 0.822 12 C -0.128 4.128 13 C -0.231 4.231 14 H 0.122 0.878 15 C 0.242 3.758 16 F -0.197 7.197 17 F -0.201 7.201 18 C -0.009 4.009 19 C -0.120 4.120 20 H 0.090 0.910 21 C 0.043 3.957 22 N -0.406 5.406 23 C -0.360 4.360 24 H 0.084 0.916 25 C -0.249 4.249 26 N -0.631 5.631 27 Si 0.772 3.228 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.187 1.187 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.181 0.819 39 H 0.123 0.877 40 H 0.185 0.815 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.195 0.805 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.134 -16.632 28.294 33.586 hybrid contribution 0.095 1.889 -0.528 1.964 sum -7.039 -14.742 27.766 32.215 Atomic orbital electron populations 1.21776 0.93601 1.03280 1.02278 1.22785 0.95899 0.82595 1.01627 1.88010 1.20131 1.28564 1.94924 1.22948 0.81982 0.97305 0.94629 0.87631 1.22928 0.98788 0.84466 0.97689 1.48744 1.57424 1.22153 1.06182 1.19909 0.78179 0.83191 0.84651 1.90721 1.45705 1.23899 1.86978 1.22190 1.04954 1.05339 0.86394 0.82229 1.23375 0.96598 0.96087 0.96723 1.23337 1.02874 1.00206 0.96666 0.87770 1.21819 0.78378 0.94271 0.81307 1.92971 1.91317 1.77324 1.58041 1.92985 1.48362 1.91367 1.87435 1.22485 0.97422 1.00653 0.80362 1.22421 0.97133 0.98323 0.94154 0.90950 1.20756 0.97911 0.87232 0.89776 1.42790 1.81933 1.04369 1.11554 1.19050 1.34765 0.93728 0.88491 0.91604 1.25365 1.02131 1.00528 0.96893 1.69848 1.53997 1.25717 1.13522 0.85578 0.78451 0.80545 0.78217 1.20670 1.21876 1.18720 0.88965 0.92107 0.93534 0.92726 0.90583 0.87822 0.87010 0.81927 0.87710 0.81483 0.89140 0.92587 0.93776 0.95007 0.80544 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.65 6.51 71.98 0.47 1.12 16 3 O -0.40 -8.49 9.94 -148.98 -1.48 -9.97 16 4 C 0.09 1.77 3.04 31.48 0.10 1.87 16 5 H 0.11 1.65 7.56 -2.39 -0.02 1.63 16 6 C 0.08 1.23 6.56 86.53 0.57 1.79 16 7 N -0.61 -14.51 3.30 -808.69 -2.67 -17.18 16 8 C 0.55 14.40 7.68 87.65 0.67 15.07 16 9 O -0.59 -21.80 16.49 -3.04 -0.05 -21.85 16 10 C -0.17 -2.50 5.26 -11.54 -0.06 -2.56 16 11 H 0.16 1.44 7.14 -2.39 -0.02 1.42 16 12 C -0.09 -0.75 9.88 30.62 0.30 -0.44 16 13 C -0.21 -3.28 5.41 -10.77 -0.06 -3.34 16 14 H 0.10 2.40 7.67 -2.39 -0.02 2.38 16 15 C 0.30 3.68 5.50 71.98 0.40 4.08 16 16 F -0.22 -3.81 17.34 44.97 0.78 -3.03 16 17 F -0.22 -4.21 17.29 44.97 0.78 -3.43 16 18 C 0.11 3.33 6.46 86.68 0.56 3.89 16 19 C -0.10 -2.92 2.82 -9.58 -0.03 -2.95 16 20 H 0.07 2.46 8.08 -2.39 -0.02 2.44 16 21 C 0.17 6.10 5.58 86.38 0.48 6.58 16 22 N -0.76 -36.04 5.33 -343.46 -1.83 -37.86 16 23 C -0.23 -13.17 10.47 84.03 0.88 -12.28 16 24 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 25 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 26 N -0.98 -63.54 13.97 21.65 0.30 -63.24 16 27 Si 0.94 47.80 27.73 68.60 1.90 49.70 16 28 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 29 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 30 H -0.26 -12.46 6.52 99.48 0.65 -11.81 16 31 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 1.14 6.88 -2.39 -0.02 1.12 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.16 -0.20 8.05 -2.39 -0.02 -0.22 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.17 0.29 7.90 -2.39 -0.02 0.27 16 41 H 0.09 2.48 7.94 -2.38 -0.02 2.46 16 42 H 0.06 2.02 7.87 -2.38 -0.02 2.00 16 43 H 0.04 1.50 7.99 -2.39 -0.02 1.48 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.36 17.09 5.53 -92.71 -0.51 16.58 16 46 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -83.54 387.15 3.63 -79.91 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.42 Total: 18.42 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.49 Total: 8.54 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -4.20 Total: -118.29 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.53 Total: -31.82 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.56 Total: -6.46 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.90 Total: 49.70 kcal Total: -83.54 3.63 -79.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691318904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.523 kcal (2) G-P(sol) polarization free energy of solvation -83.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds