Wall clock time and date at job start Tue Mar 31 2020 17:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40173 * 119.27057 * 179.67481 * 3 2 1 5 5 N 1.31255 * 120.35709 * 0.63972 * 4 3 2 6 6 C 1.33986 * 120.88015 * 359.66841 * 5 4 3 7 7 N 1.32499 * 132.34596 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 179.97438 * 7 6 5 9 9 C 1.48131 * 125.32259 * 179.97438 * 8 7 6 10 10 O 1.21519 * 119.99807 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00103 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46293 * 35.00450 * 12 11 9 14 14 C 1.53001 * 109.47177 * 275.00663 * 12 11 9 15 15 C 1.52999 * 109.46734 * 155.00168 * 12 11 9 16 16 C 1.52991 * 109.47435 * 295.00071 * 15 12 11 17 17 C 1.52998 * 109.47405 * 180.02562 * 16 15 12 18 18 N 1.46495 * 109.47408 * 180.02562 * 17 16 15 19 19 C 1.36938 * 120.00302 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00417 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00313 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99694 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47311 * 89.99799 * 23 21 19 25 25 H 1.48504 * 109.47206 * 209.99738 * 23 21 19 26 26 H 1.48497 * 109.47397 * 329.99757 * 23 21 19 27 27 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 28 28 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 32 32 H 1.07998 * 120.36884 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.82303 * 180.30601 * 4 3 2 34 34 H 0.97006 * 119.99693 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.46540 * 299.99613 * 14 12 11 36 36 H 1.08999 * 109.47242 * 59.99488 * 14 12 11 37 37 H 1.09000 * 109.46833 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47364 * 55.00744 * 15 12 11 39 39 H 1.09006 * 109.46645 * 174.99995 * 15 12 11 40 40 H 1.09002 * 109.47395 * 300.00654 * 16 15 12 41 41 H 1.09006 * 109.47266 * 60.00305 * 16 15 12 42 42 H 1.09002 * 109.47056 * 300.00467 * 17 16 15 43 43 H 1.08998 * 109.47555 * 59.99888 * 17 16 15 44 44 H 0.97001 * 120.00020 * 0.02562 * 18 17 16 45 45 H 0.96990 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0069 5 7 4.2360 -0.0068 0.0007 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0121 8 6 2.9091 -3.2412 -0.0163 9 6 2.9637 -4.7215 -0.0244 10 8 1.9344 -5.3674 -0.0272 11 7 4.1550 -5.3519 -0.0286 12 6 4.2090 -6.8159 -0.0361 13 1 3.3806 -7.2069 -0.6268 14 6 4.1032 -7.3374 1.3984 15 6 5.5337 -7.2741 -0.6492 16 6 5.5850 -6.8597 -2.1210 17 6 6.9094 -7.3186 -2.7343 18 7 6.9588 -6.9212 -4.1434 19 6 8.0568 -7.2260 -4.9028 20 1 8.8863 -7.7597 -4.4628 21 6 8.1034 -6.8500 -6.2382 22 7 9.1586 -7.1433 -6.9682 23 14 6.6684 -5.9275 -6.9992 24 1 6.8777 -4.4662 -6.8377 25 1 6.5780 -6.2578 -8.4442 26 1 5.4087 -6.3251 -6.3209 27 7 1.8048 -2.5182 -0.0121 28 7 2.1978 -1.1735 -0.0058 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 1.6693 2.1124 -0.0004 33 1 4.1535 2.0649 0.0120 34 1 4.9766 -4.8362 -0.0260 35 1 4.9316 -6.9463 1.9891 36 1 3.1595 -7.0108 1.8352 37 1 4.1430 -8.4267 1.3928 38 1 6.3619 -6.8115 -0.1123 39 1 5.6128 -8.3587 -0.5741 40 1 4.7568 -7.3224 -2.6578 41 1 5.5059 -5.7751 -2.1961 42 1 7.7378 -6.8562 -2.1975 43 1 6.9882 -8.4031 -2.6593 44 1 6.2139 -6.4415 -4.5385 45 1 9.1909 -6.8809 -7.9013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700685166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:55 Heat of formation + Delta-G solvation = 107.428182 kcal Electronic energy + Delta-G solvation = -27415.789064 eV Core-core repulsion = 23471.316657 eV Total energy + Delta-G solvation = -3944.472407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.42569 -40.24435 -39.06434 -36.88931 -35.80362 -35.01642 -32.89735 -32.21582 -31.45245 -31.16795 -29.75600 -29.13537 -26.14583 -25.62892 -24.70981 -22.91501 -22.37529 -21.07609 -20.90127 -20.62900 -19.17775 -18.57310 -17.54517 -17.45388 -17.27574 -16.44205 -16.14968 -15.27332 -14.81255 -14.65570 -14.63475 -14.28553 -14.12559 -13.97912 -13.87465 -13.66856 -13.24542 -13.17856 -13.07793 -12.93883 -12.61990 -12.28007 -12.16733 -12.03948 -11.68531 -11.27423 -10.94702 -10.88202 -10.78848 -10.62184 -10.53844 -10.40518 -10.36123 -10.26822 -10.05972 -9.54131 -9.29207 -9.28435 -8.83438 -7.16692 -5.71794 -3.06489 -0.21140 0.09351 1.18487 1.37782 2.47394 2.68041 2.82474 3.08753 3.42231 3.45832 3.46095 3.49093 3.63559 4.01935 4.21734 4.47876 4.62729 4.63575 4.64641 4.65644 4.70694 4.94709 5.08638 5.09776 5.30860 5.38380 5.43295 5.47255 5.50781 5.55822 5.58710 5.65589 5.70982 5.86772 5.96520 6.02020 6.12505 6.14619 6.31580 6.35053 6.81584 6.84277 6.85341 7.08731 7.38859 7.84682 8.05285 8.47804 9.27338 10.00168 10.20375 11.46866 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.002809 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.847997 B = 9964.688141 C =11786.730185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.204 3.796 3 C -0.226 4.226 4 C 0.213 3.787 5 N -0.452 5.452 6 C 0.448 3.552 7 N -0.497 5.497 8 C 0.241 3.759 9 C 0.612 3.388 10 O -0.509 6.509 11 N -0.692 5.692 12 C 0.141 3.859 13 H 0.094 0.906 14 C -0.164 4.164 15 C -0.123 4.123 16 C -0.133 4.133 17 C 0.157 3.843 18 N -0.758 5.758 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 N -0.269 5.269 28 N -0.327 5.327 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.177 0.823 33 H 0.195 0.805 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.768 18.721 21.443 34.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 C -0.251 4.251 4 C 0.027 3.973 5 N -0.167 5.167 6 C 0.087 3.913 7 N -0.231 5.231 8 C -0.043 4.043 9 C 0.392 3.608 10 O -0.381 6.381 11 N -0.345 5.345 12 C 0.037 3.963 13 H 0.112 0.888 14 C -0.222 4.222 15 C -0.161 4.161 16 C -0.171 4.171 17 C 0.030 3.970 18 N -0.404 5.404 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 N -0.102 5.102 28 N -0.109 5.109 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.194 0.806 33 H 0.211 0.789 34 H 0.251 0.749 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.694 17.224 21.366 33.206 hybrid contribution -1.283 1.431 -0.753 2.065 sum -19.977 18.655 20.613 34.235 Atomic orbital electron populations 1.21110 0.86080 1.05853 1.05110 1.20979 0.96866 0.81825 0.91750 1.21876 0.95778 0.97965 1.09478 1.23688 0.91769 0.95850 0.85946 1.68111 1.36092 0.94996 1.17463 1.22722 0.78276 0.93682 0.96606 1.70851 1.28100 0.96441 1.27727 1.24235 0.86004 0.96847 0.97196 1.16284 0.84795 0.81889 0.77843 1.90849 1.33545 1.64789 1.48878 1.45884 1.07872 1.08131 1.72619 1.21228 1.00067 0.77699 0.97263 0.88824 1.22189 1.02380 1.01669 0.95944 1.21852 0.95546 1.02367 0.96328 1.21814 0.99448 1.01407 0.94383 1.20621 0.93894 0.97177 0.85279 1.42741 1.20414 1.69959 1.07246 1.19085 0.95406 1.30664 0.92016 0.89204 1.24669 0.97261 1.01006 0.96364 1.69701 1.28859 1.52090 1.07760 0.86544 0.83107 0.80224 0.78680 1.21113 1.21711 1.20374 1.78870 1.19336 0.82990 1.29040 1.49040 1.09226 1.06324 1.46296 0.88375 0.88960 0.88160 0.80594 0.78859 0.74860 0.92137 0.92215 0.91036 0.90853 0.89657 0.91931 0.91975 0.95561 0.95613 0.80746 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.13 36.01 0.36 -0.09 16 2 C 0.20 1.34 6.86 -81.58 -0.56 0.79 16 3 C -0.23 -0.76 9.72 -39.77 -0.39 -1.15 16 4 C 0.21 1.06 11.27 -17.07 -0.19 0.86 16 5 N -0.45 -4.76 10.48 -13.79 -0.14 -4.91 16 6 C 0.45 5.85 8.99 -323.04 -2.90 2.95 16 7 N -0.50 -7.36 10.89 -12.23 -0.13 -7.49 16 8 C 0.24 3.58 7.92 -156.78 -1.24 2.34 16 9 C 0.61 9.01 7.81 -12.20 -0.10 8.91 16 10 O -0.51 -8.61 16.73 5.35 0.09 -8.52 16 11 N -0.69 -8.64 4.53 -54.66 -0.25 -8.88 16 12 C 0.14 1.61 2.57 -67.93 -0.17 1.44 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 14 C -0.16 -1.59 9.48 37.16 0.35 -1.23 16 15 C -0.12 -1.42 4.75 -26.74 -0.13 -1.55 16 16 C -0.13 -2.06 5.21 -26.74 -0.14 -2.20 16 17 C 0.16 3.12 6.26 -4.05 -0.03 3.10 16 18 N -0.76 -19.04 5.41 -59.91 -0.32 -19.37 16 19 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 20 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 21 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -30.28 13.97 55.49 0.78 -29.51 16 23 Si 0.88 23.14 27.73 -169.99 -4.71 18.43 16 24 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 26 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 27 N -0.27 -3.81 12.67 32.02 0.41 -3.41 16 28 N -0.33 -3.76 3.91 -10.07 -0.04 -3.80 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.06 8.09 -51.93 -0.42 -0.36 16 32 H 0.18 -0.20 8.06 -52.49 -0.42 -0.62 16 33 H 0.19 0.07 8.06 -52.49 -0.42 -0.35 16 34 H 0.41 4.90 8.27 -40.82 -0.34 4.57 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.36 8.92 5.53 -40.82 -0.23 8.69 16 45 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -39.86 385.12 -10.35 -50.22 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.44 Total: 4.59 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -5.38 Total: 6.84 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: 0.29 Total: -77.36 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.86 -10.35 -50.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700685166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.647 kcal (2) G-P(sol) polarization free energy of solvation -39.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds