Wall clock time and date at job start Tue Mar 31 2020 17:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40173 * 119.27057 * 179.67481 * 3 2 1 5 5 N 1.31255 * 120.35709 * 0.63972 * 4 3 2 6 6 C 1.33986 * 120.88015 * 359.66841 * 5 4 3 7 7 N 1.32499 * 132.34596 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 179.97438 * 7 6 5 9 9 C 1.48131 * 125.32259 * 179.97438 * 8 7 6 10 10 O 1.21519 * 119.99807 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00103 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46293 * 35.00450 * 12 11 9 14 14 C 1.53001 * 109.47177 * 275.00663 * 12 11 9 15 15 C 1.52999 * 109.46734 * 155.00168 * 12 11 9 16 16 C 1.52991 * 109.47435 * 295.00071 * 15 12 11 17 17 C 1.52998 * 109.47405 * 180.02562 * 16 15 12 18 18 N 1.46495 * 109.47408 * 180.02562 * 17 16 15 19 19 C 1.36938 * 120.00302 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00417 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00313 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99694 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47311 * 89.99799 * 23 21 19 25 25 H 1.48504 * 109.47206 * 209.99738 * 23 21 19 26 26 H 1.48497 * 109.47397 * 329.99757 * 23 21 19 27 27 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 28 28 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 32 32 H 1.07998 * 120.36884 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.82303 * 180.30601 * 4 3 2 34 34 H 0.97006 * 119.99693 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.46540 * 299.99613 * 14 12 11 36 36 H 1.08999 * 109.47242 * 59.99488 * 14 12 11 37 37 H 1.09000 * 109.46833 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47364 * 55.00744 * 15 12 11 39 39 H 1.09006 * 109.46645 * 174.99995 * 15 12 11 40 40 H 1.09002 * 109.47395 * 300.00654 * 16 15 12 41 41 H 1.09006 * 109.47266 * 60.00305 * 16 15 12 42 42 H 1.09002 * 109.47056 * 300.00467 * 17 16 15 43 43 H 1.08998 * 109.47555 * 59.99888 * 17 16 15 44 44 H 0.97001 * 120.00020 * 0.02562 * 18 17 16 45 45 H 0.96990 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0069 5 7 4.2360 -0.0068 0.0007 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0121 8 6 2.9091 -3.2412 -0.0163 9 6 2.9637 -4.7215 -0.0244 10 8 1.9344 -5.3674 -0.0272 11 7 4.1550 -5.3519 -0.0286 12 6 4.2090 -6.8159 -0.0361 13 1 3.3806 -7.2069 -0.6268 14 6 4.1032 -7.3374 1.3984 15 6 5.5337 -7.2741 -0.6492 16 6 5.5850 -6.8597 -2.1210 17 6 6.9094 -7.3186 -2.7343 18 7 6.9588 -6.9212 -4.1434 19 6 8.0568 -7.2260 -4.9028 20 1 8.8863 -7.7597 -4.4628 21 6 8.1034 -6.8500 -6.2382 22 7 9.1586 -7.1433 -6.9682 23 14 6.6684 -5.9275 -6.9992 24 1 6.8777 -4.4662 -6.8377 25 1 6.5780 -6.2578 -8.4442 26 1 5.4087 -6.3251 -6.3209 27 7 1.8048 -2.5182 -0.0121 28 7 2.1978 -1.1735 -0.0058 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 1.6693 2.1124 -0.0004 33 1 4.1535 2.0649 0.0120 34 1 4.9766 -4.8362 -0.0260 35 1 4.9316 -6.9463 1.9891 36 1 3.1595 -7.0108 1.8352 37 1 4.1430 -8.4267 1.3928 38 1 6.3619 -6.8115 -0.1123 39 1 5.6128 -8.3587 -0.5741 40 1 4.7568 -7.3224 -2.6578 41 1 5.5059 -5.7751 -2.1961 42 1 7.7378 -6.8562 -2.1975 43 1 6.9882 -8.4031 -2.6593 44 1 6.2139 -6.4415 -4.5385 45 1 9.1909 -6.8809 -7.9013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700685166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:54 Heat of formation + Delta-G solvation = 79.289051 kcal Electronic energy + Delta-G solvation = -27417.009268 eV Core-core repulsion = 23471.316657 eV Total energy + Delta-G solvation = -3945.692611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.19096 -41.22063 -39.80161 -38.10703 -36.72359 -36.39323 -34.34869 -33.37121 -32.55235 -32.25760 -31.13125 -29.54592 -27.43480 -26.73715 -25.32516 -24.45580 -23.32383 -22.55603 -21.98356 -21.62872 -19.91903 -19.64361 -19.29542 -18.37516 -18.07606 -17.43776 -16.68587 -16.55925 -16.29469 -15.94463 -15.83065 -15.28795 -15.21494 -15.01311 -14.66305 -14.55997 -14.42020 -14.05504 -13.85568 -13.84522 -13.61461 -13.53120 -13.37870 -13.12244 -12.87745 -12.68700 -12.52542 -12.17237 -12.08597 -11.91116 -11.85180 -11.71198 -11.58844 -11.54223 -11.14002 -11.01272 -10.99810 -10.31405 -9.97330 -9.31957 -8.06216 -5.39077 -0.79581 -0.55772 0.49888 0.51560 1.33455 1.35923 1.43311 1.58582 1.86414 2.11206 2.27006 2.44264 2.80790 3.16711 3.25125 3.26852 3.47366 3.79248 3.83492 4.06252 4.06863 4.12096 4.24236 4.34705 4.41502 4.47911 4.52311 4.52708 4.58547 4.66065 4.80967 4.82036 4.84255 4.93260 4.95441 5.08550 5.09107 5.18114 5.26035 5.29768 5.39911 5.44409 5.73027 6.05109 6.18891 6.25368 6.53313 6.81228 7.04682 7.82298 7.99980 9.15496 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.002809 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.847997 B = 9964.688141 C =11786.730185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.168 3.832 3 C -0.188 4.188 4 C 0.223 3.777 5 N -0.492 5.492 6 C 0.428 3.572 7 N -0.530 5.530 8 C 0.223 3.777 9 C 0.612 3.388 10 O -0.541 6.541 11 N -0.683 5.683 12 C 0.142 3.858 13 H 0.081 0.919 14 C -0.156 4.156 15 C -0.111 4.111 16 C -0.121 4.121 17 C 0.152 3.848 18 N -0.764 5.764 19 C -0.235 4.235 20 H 0.060 0.940 21 C -0.064 4.064 22 N -0.982 5.982 23 Si 0.953 3.047 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.258 1.258 27 N -0.297 5.297 28 N -0.329 5.329 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.236 0.764 33 H 0.245 0.755 34 H 0.418 0.582 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.028 0.972 43 H 0.029 0.971 44 H 0.363 0.637 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.552 21.932 22.595 37.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 C -0.211 4.211 4 C 0.041 3.959 5 N -0.209 5.209 6 C 0.068 3.932 7 N -0.266 5.266 8 C -0.061 4.061 9 C 0.392 3.608 10 O -0.416 6.416 11 N -0.335 5.335 12 C 0.039 3.961 13 H 0.099 0.901 14 C -0.214 4.214 15 C -0.149 4.149 16 C -0.159 4.159 17 C 0.027 3.973 18 N -0.410 5.410 19 C -0.366 4.366 20 H 0.078 0.922 21 C -0.255 4.255 22 N -0.633 5.633 23 Si 0.781 3.219 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.183 1.183 27 N -0.132 5.132 28 N -0.111 5.111 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.252 0.748 33 H 0.261 0.739 34 H 0.255 0.745 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.195 0.805 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.498 20.483 22.570 36.731 hybrid contribution -0.684 0.663 -1.034 1.406 sum -21.181 21.146 21.536 36.873 Atomic orbital electron populations 1.21221 0.84099 1.06419 1.05909 1.21961 0.98630 0.81162 0.92975 1.22631 0.95148 0.98767 1.04580 1.24753 0.93165 0.95684 0.82318 1.68229 1.37112 0.95522 1.20060 1.22938 0.79125 0.94045 0.97118 1.70695 1.28787 0.97686 1.29410 1.24120 0.86493 0.96828 0.98663 1.16402 0.84853 0.82129 0.77418 1.90808 1.34524 1.65519 1.50747 1.45918 1.07400 1.08619 1.71536 1.21277 0.99434 0.77027 0.98394 0.90118 1.22129 1.02099 1.02804 0.94408 1.21781 0.96030 1.03599 0.93470 1.21692 0.96667 1.00873 0.96685 1.20845 0.96349 0.97342 0.82792 1.42832 1.19139 1.69974 1.09024 1.19097 0.95763 1.29268 0.92493 0.92218 1.25489 1.00296 1.02712 0.97032 1.69871 1.31296 1.54018 1.08118 0.85432 0.80222 0.78731 0.77546 1.20564 1.21701 1.18297 1.78679 1.19843 0.84652 1.30034 1.49106 1.09277 1.06411 1.46319 0.87354 0.91684 0.84200 0.74765 0.73893 0.74475 0.91002 0.93576 0.89151 0.89448 0.87807 0.92312 0.92614 0.95382 0.95251 0.80454 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.13 71.24 0.72 0.13 16 2 C 0.17 1.86 6.86 41.29 0.28 2.14 16 3 C -0.19 -0.38 9.72 22.15 0.22 -0.17 16 4 C 0.22 1.34 11.27 85.25 0.96 2.30 16 5 N -0.49 -9.76 10.48 -197.54 -2.07 -11.83 16 6 C 0.43 11.35 8.99 261.57 2.35 13.70 16 7 N -0.53 -16.50 10.89 -192.61 -2.10 -18.60 16 8 C 0.22 7.04 7.92 137.40 1.09 8.12 16 9 C 0.61 18.98 7.81 86.87 0.68 19.66 16 10 O -0.54 -19.33 16.73 -3.77 -0.06 -19.39 16 11 N -0.68 -17.40 4.53 -445.13 -2.02 -19.41 16 12 C 0.14 3.16 2.57 44.99 0.12 3.27 16 13 H 0.08 2.05 7.58 -2.39 -0.02 2.03 16 14 C -0.16 -2.85 9.48 71.98 0.68 -2.17 16 15 C -0.11 -2.38 4.75 30.59 0.15 -2.23 16 16 C -0.12 -3.65 5.21 30.59 0.16 -3.49 16 17 C 0.15 5.94 6.26 86.38 0.54 6.48 16 18 N -0.76 -38.10 5.41 -343.46 -1.86 -39.95 16 19 C -0.24 -14.10 10.47 84.03 0.88 -13.22 16 20 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 21 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.98 -64.91 13.97 21.65 0.30 -64.61 16 23 Si 0.95 48.01 27.73 68.60 1.90 49.91 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.26 -12.03 6.52 99.48 0.65 -11.38 16 27 N -0.30 -8.92 12.67 -52.60 -0.67 -9.59 16 28 N -0.33 -7.61 3.91 -185.76 -0.73 -8.33 16 29 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.14 -0.47 8.09 -2.38 -0.02 -0.49 16 32 H 0.24 -2.33 8.06 -2.91 -0.02 -2.35 16 33 H 0.25 -1.23 8.06 -2.91 -0.02 -1.25 16 34 H 0.42 10.10 8.27 -92.70 -0.77 9.33 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.76 7.75 -2.38 -0.02 1.74 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.36 17.56 5.53 -92.71 -0.51 17.05 16 45 H 0.26 16.21 8.31 -92.72 -0.77 15.44 16 Total: -1.00 -93.41 385.12 1.69 -91.72 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.31 Total: 19.00 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: 9.29 Total: 31.08 kcal Atomic # 7 Polarization: -163.20 SS G_CDS: -9.13 Total: -172.33 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.06 Total: -19.39 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.90 Total: 49.91 kcal Total: -93.41 1.69 -91.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700685166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.014 kcal (2) G-P(sol) polarization free energy of solvation -93.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds