Wall clock time and date at job start Tue Mar 31 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46857 * 2 1 4 4 N 1.46499 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99486 * 275.30682 * 4 3 2 6 6 H 1.07990 * 120.00250 * 37.57906 * 5 4 3 7 7 C 1.38808 * 119.99559 * 217.57714 * 5 4 3 8 8 N 1.31627 * 120.00133 * 21.43726 * 7 5 4 9 9 Si 1.86797 * 119.99947 * 201.43307 * 7 5 4 10 10 H 1.48498 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46984 * 120.00185 * 9 7 5 12 12 H 1.48502 * 109.47290 * 240.00410 * 9 7 5 13 13 C 1.46492 * 120.00104 * 95.31100 * 4 3 2 14 14 C 1.53002 * 109.47055 * 269.99723 * 13 4 3 15 15 N 1.46502 * 109.46946 * 180.02562 * 14 13 4 16 16 C 1.34775 * 119.99700 * 180.02562 * 15 14 13 17 17 O 1.21518 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.48127 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.33469 * 125.32492 * 359.96413 * 18 16 15 20 20 C 1.32498 * 109.75365 * 180.02562 * 19 18 16 21 21 N 1.33987 * 132.34060 * 180.32363 * 20 19 18 22 22 C 1.31254 * 120.88205 * 180.20423 * 21 20 19 23 23 C 1.40168 * 120.35668 * 359.44212 * 22 21 20 24 24 C 1.50702 * 120.36712 * 180.29522 * 23 22 21 25 25 C 1.35689 * 119.27165 * 0.28119 * 23 22 21 26 26 N 1.36168 * 119.02778 * 359.97438 * 25 23 22 27 27 N 1.31993 * 125.32401 * 180.02562 * 18 16 15 28 28 H 1.09001 * 109.46524 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47265 * 299.99588 * 1 2 3 30 30 H 1.08991 * 109.47326 * 60.00680 * 1 2 3 31 31 H 1.08994 * 109.47742 * 240.00201 * 2 1 3 32 32 H 1.08998 * 109.47712 * 119.99363 * 2 1 3 33 33 H 1.09003 * 109.47023 * 59.99671 * 3 2 1 34 34 H 1.08998 * 109.46439 * 300.00142 * 3 2 1 35 35 H 0.96997 * 119.99530 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47096 * 149.99340 * 13 4 3 37 37 H 1.08996 * 109.47554 * 29.99573 * 13 4 3 38 38 H 1.08993 * 109.47026 * 60.00166 * 14 13 4 39 39 H 1.09005 * 109.46818 * 299.99992 * 14 13 4 40 40 H 0.96996 * 120.00038 * 359.97438 * 15 14 13 41 41 H 1.08006 * 119.82593 * 179.71902 * 22 21 20 42 42 H 1.09006 * 109.46605 * 90.00344 * 24 23 22 43 43 H 1.08996 * 109.47273 * 210.00080 * 24 23 22 44 44 H 1.08992 * 109.46989 * 330.00586 * 24 23 22 45 45 H 1.07999 * 120.48653 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1901 1.3328 1.1800 6 1 3.8185 0.6873 1.9619 7 6 5.3622 2.0513 1.3716 8 7 5.6023 3.1242 0.6479 9 14 6.5988 1.4955 2.6566 10 1 6.0968 0.2707 3.3296 11 1 7.8975 1.2016 1.9991 12 1 6.7855 2.5721 3.6622 13 6 4.2369 1.5603 -1.2641 14 6 4.4917 0.1649 -1.8377 15 7 5.2243 0.2826 -3.1009 16 6 5.5606 -0.8255 -3.7905 17 8 5.2567 -1.9221 -3.3642 18 6 6.3018 -0.7066 -5.0675 19 7 6.6881 0.4396 -5.6318 20 6 7.3262 0.1879 -6.7654 21 7 7.8989 0.9874 -7.6753 22 6 8.4786 0.4877 -8.7416 23 6 8.5187 -0.8991 -8.9418 24 6 9.1900 -1.4734 -10.1627 25 6 7.9467 -1.7187 -8.0242 26 7 7.3482 -1.1706 -6.9307 27 7 6.6825 -1.7176 -5.8259 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9565 0.8900 34 1 1.6765 1.9563 -0.8900 35 1 6.4212 3.6264 0.7821 36 1 5.1893 2.0600 -1.0871 37 1 3.6476 2.1422 -1.9727 38 1 3.5393 -0.3346 -2.0147 39 1 5.0812 -0.4170 -1.1291 40 1 5.4665 1.1579 -3.4414 41 1 8.9310 1.1482 -9.4665 42 1 10.2416 -1.6601 -9.9450 43 1 8.7042 -2.4095 -10.4379 44 1 9.1098 -0.7661 -10.9880 45 1 7.9658 -2.7901 -8.1590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713546824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:14 Heat of formation + Delta-G solvation = 117.851597 kcal Electronic energy + Delta-G solvation = -27517.359603 eV Core-core repulsion = 23573.339189 eV Total energy + Delta-G solvation = -3944.020414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.24387 -39.82877 -38.72968 -36.47009 -35.11819 -34.35139 -33.47112 -32.84524 -31.10475 -30.81127 -28.77534 -27.49474 -25.72008 -25.53050 -24.35400 -23.26358 -22.85094 -20.92049 -20.43997 -20.00997 -18.98927 -18.35469 -17.33895 -17.04593 -16.54596 -16.11911 -15.36982 -15.22212 -14.79265 -14.66053 -14.32565 -14.18826 -13.88782 -13.76158 -13.59360 -13.07779 -13.00428 -12.93958 -12.89500 -12.76899 -12.64836 -12.07996 -11.55243 -11.49893 -11.17117 -10.92280 -10.71849 -10.61564 -10.46369 -10.42369 -10.34519 -10.16896 -10.00888 -9.96785 -9.85739 -9.62474 -9.13846 -8.63590 -8.45506 -6.60376 -5.80946 -3.40082 -0.07574 0.21441 1.39123 1.62971 2.73060 2.84426 3.12175 3.37154 3.40140 3.46224 3.49452 3.74030 3.77128 4.08573 4.33985 4.44448 4.50567 4.76838 4.91044 5.08531 5.23089 5.29913 5.38197 5.49490 5.62076 5.68580 5.70004 5.74275 5.78767 6.02951 6.11754 6.20310 6.31409 6.43865 6.53081 6.64323 6.68542 6.73775 6.96224 6.99807 7.00853 7.20840 7.37240 7.57682 7.82343 7.83742 8.32857 8.50555 9.16479 9.78542 10.36249 11.19045 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002542 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.043728 B =11014.275509 C =12055.299940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.262 4.262 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.884 5.884 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.136 3.864 14 C 0.096 3.904 15 N -0.687 5.687 16 C 0.600 3.400 17 O -0.514 6.514 18 C 0.248 3.752 19 N -0.493 5.493 20 C 0.436 3.564 21 N -0.443 5.443 22 C 0.211 3.789 23 C -0.187 4.187 24 C -0.097 4.097 25 C 0.167 3.833 26 N -0.326 5.326 27 N -0.270 5.270 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.255 0.745 36 H 0.101 0.899 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.411 0.589 41 H 0.192 0.808 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 -6.763 -23.731 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.526 5.526 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.338 5.338 16 C 0.379 3.621 17 O -0.387 6.387 18 C -0.036 4.036 19 N -0.227 5.227 20 C 0.076 3.924 21 N -0.156 5.156 22 C 0.023 3.977 23 C -0.195 4.195 24 C -0.155 4.155 25 C 0.030 3.970 26 N -0.106 5.106 27 N -0.104 5.104 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.247 0.753 41 H 0.209 0.791 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.233 -6.909 -22.460 24.074 hybrid contribution 1.100 -0.741 0.002 1.327 sum 6.333 -7.650 -22.458 24.556 Atomic orbital electron populations 1.21718 0.97350 1.00386 1.00999 1.22196 0.93818 1.00964 1.01605 1.20951 0.84993 0.92968 0.99000 1.43606 0.99459 1.84721 1.01999 1.19047 1.05664 1.20492 0.93933 0.91968 1.25199 1.00824 0.94563 0.98100 1.70001 1.25600 1.14708 1.42332 0.86352 0.81566 0.78434 0.81199 1.19973 1.21393 1.21591 1.21077 1.00664 0.90862 0.86527 1.22707 0.94884 1.03558 0.81725 1.45957 1.55747 1.08343 1.23787 1.16402 0.79573 0.85598 0.80542 1.90839 1.53969 1.26269 1.67604 1.24521 0.96531 0.85591 0.96968 1.70884 1.19729 1.25991 1.06114 1.22704 0.96494 0.79059 0.94176 1.68094 1.11165 1.34412 1.01918 1.23632 0.89129 0.93045 0.91886 1.20662 1.04571 0.94556 0.99701 1.20636 1.00426 1.01782 0.92696 1.22040 0.90622 1.01540 0.82799 1.49047 1.35893 1.09374 1.16305 1.78968 1.17806 1.17816 0.95792 0.93830 0.93212 0.93460 0.92912 0.92312 0.93519 0.94672 0.93492 0.88152 0.94915 0.92311 0.91069 0.75345 0.79095 0.90008 0.90533 0.89888 0.79896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.15 -2.70 6.23 -26.73 -0.17 -2.87 16 3 C 0.15 3.08 5.72 -4.04 -0.02 3.06 16 4 N -0.58 -14.08 2.43 -173.24 -0.42 -14.50 16 5 C -0.26 -7.04 9.45 -15.06 -0.14 -7.18 16 6 H 0.06 1.69 7.92 -52.49 -0.42 1.27 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 8 N -0.88 -25.00 11.47 55.49 0.64 -24.36 16 9 Si 0.90 21.67 29.60 -169.99 -5.03 16.64 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.14 3.09 5.45 -4.04 -0.02 3.07 16 14 C 0.10 2.00 6.00 -4.04 -0.02 1.97 16 15 N -0.69 -12.93 5.55 -61.16 -0.34 -13.27 16 16 C 0.60 11.73 7.84 -12.20 -0.10 11.64 16 17 O -0.51 -11.38 17.07 5.35 0.09 -11.29 16 18 C 0.25 4.44 7.92 -156.78 -1.24 3.20 16 19 N -0.49 -8.47 10.89 -12.23 -0.13 -8.61 16 20 C 0.44 6.36 8.98 -323.04 -2.90 3.46 16 21 N -0.44 -5.11 10.48 -13.79 -0.14 -5.25 16 22 C 0.21 1.26 10.96 -17.07 -0.19 1.07 16 23 C -0.19 -0.86 5.87 -104.81 -0.61 -1.47 16 24 C -0.10 -0.06 10.03 36.01 0.36 0.30 16 25 C 0.17 1.23 10.97 -16.54 -0.18 1.05 16 26 N -0.33 -4.25 3.91 -13.80 -0.05 -4.30 16 27 N -0.27 -4.51 12.78 32.02 0.41 -4.10 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.00 6.64 -51.93 -0.34 0.65 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.03 0.69 7.83 -51.93 -0.41 0.29 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.10 2.57 5.52 -51.93 -0.29 2.28 16 37 H 0.03 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.06 1.22 6.64 -51.93 -0.34 0.87 16 39 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.41 7.20 8.14 -40.82 -0.33 6.87 16 41 H 0.19 0.27 8.06 -52.48 -0.42 -0.16 16 42 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.08 0.00 8.09 -51.93 -0.42 -0.42 16 44 H 0.08 -0.06 8.10 -51.93 -0.42 -0.48 16 45 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -35.19 383.89 -10.48 -45.66 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.32 Total: 1.84 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: -4.96 Total: 15.74 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -0.05 Total: -74.38 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.19 -10.48 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713546824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.516 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds