Wall clock time and date at job start Tue Mar 31 2020 18:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46857 * 2 1 4 4 N 1.46499 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99486 * 275.30682 * 4 3 2 6 6 H 1.07990 * 120.00250 * 37.57906 * 5 4 3 7 7 C 1.38808 * 119.99559 * 217.57714 * 5 4 3 8 8 N 1.31627 * 120.00133 * 21.43726 * 7 5 4 9 9 Si 1.86797 * 119.99947 * 201.43307 * 7 5 4 10 10 H 1.48498 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46984 * 120.00185 * 9 7 5 12 12 H 1.48502 * 109.47290 * 240.00410 * 9 7 5 13 13 C 1.46492 * 120.00104 * 95.31100 * 4 3 2 14 14 C 1.53002 * 109.47055 * 269.99723 * 13 4 3 15 15 N 1.46502 * 109.46946 * 180.02562 * 14 13 4 16 16 C 1.34775 * 119.99700 * 180.02562 * 15 14 13 17 17 O 1.21518 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.48127 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.33469 * 125.32492 * 359.96413 * 18 16 15 20 20 C 1.32498 * 109.75365 * 180.02562 * 19 18 16 21 21 N 1.33987 * 132.34060 * 180.32363 * 20 19 18 22 22 C 1.31254 * 120.88205 * 180.20423 * 21 20 19 23 23 C 1.40168 * 120.35668 * 359.44212 * 22 21 20 24 24 C 1.50702 * 120.36712 * 180.29522 * 23 22 21 25 25 C 1.35689 * 119.27165 * 0.28119 * 23 22 21 26 26 N 1.36168 * 119.02778 * 359.97438 * 25 23 22 27 27 N 1.31993 * 125.32401 * 180.02562 * 18 16 15 28 28 H 1.09001 * 109.46524 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47265 * 299.99588 * 1 2 3 30 30 H 1.08991 * 109.47326 * 60.00680 * 1 2 3 31 31 H 1.08994 * 109.47742 * 240.00201 * 2 1 3 32 32 H 1.08998 * 109.47712 * 119.99363 * 2 1 3 33 33 H 1.09003 * 109.47023 * 59.99671 * 3 2 1 34 34 H 1.08998 * 109.46439 * 300.00142 * 3 2 1 35 35 H 0.96997 * 119.99530 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47096 * 149.99340 * 13 4 3 37 37 H 1.08996 * 109.47554 * 29.99573 * 13 4 3 38 38 H 1.08993 * 109.47026 * 60.00166 * 14 13 4 39 39 H 1.09005 * 109.46818 * 299.99992 * 14 13 4 40 40 H 0.96996 * 120.00038 * 359.97438 * 15 14 13 41 41 H 1.08006 * 119.82593 * 179.71902 * 22 21 20 42 42 H 1.09006 * 109.46605 * 90.00344 * 24 23 22 43 43 H 1.08996 * 109.47273 * 210.00080 * 24 23 22 44 44 H 1.08992 * 109.46989 * 330.00586 * 24 23 22 45 45 H 1.07999 * 120.48653 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1901 1.3328 1.1800 6 1 3.8185 0.6873 1.9619 7 6 5.3622 2.0513 1.3716 8 7 5.6023 3.1242 0.6479 9 14 6.5988 1.4955 2.6566 10 1 6.0968 0.2707 3.3296 11 1 7.8975 1.2016 1.9991 12 1 6.7855 2.5721 3.6622 13 6 4.2369 1.5603 -1.2641 14 6 4.4917 0.1649 -1.8377 15 7 5.2243 0.2826 -3.1009 16 6 5.5606 -0.8255 -3.7905 17 8 5.2567 -1.9221 -3.3642 18 6 6.3018 -0.7066 -5.0675 19 7 6.6881 0.4396 -5.6318 20 6 7.3262 0.1879 -6.7654 21 7 7.8989 0.9874 -7.6753 22 6 8.4786 0.4877 -8.7416 23 6 8.5187 -0.8991 -8.9418 24 6 9.1900 -1.4734 -10.1627 25 6 7.9467 -1.7187 -8.0242 26 7 7.3482 -1.1706 -6.9307 27 7 6.6825 -1.7176 -5.8259 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9565 0.8900 34 1 1.6765 1.9563 -0.8900 35 1 6.4212 3.6264 0.7821 36 1 5.1893 2.0600 -1.0871 37 1 3.6476 2.1422 -1.9727 38 1 3.5393 -0.3346 -2.0147 39 1 5.0812 -0.4170 -1.1291 40 1 5.4665 1.1579 -3.4414 41 1 8.9310 1.1482 -9.4665 42 1 10.2416 -1.6601 -9.9450 43 1 8.7042 -2.4095 -10.4379 44 1 9.1098 -0.7661 -10.9880 45 1 7.9658 -2.7901 -8.1590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713546824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:13 Heat of formation + Delta-G solvation = 95.574552 kcal Electronic energy + Delta-G solvation = -27518.325608 eV Core-core repulsion = 23573.339189 eV Total energy + Delta-G solvation = -3944.986419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.20328 -41.08277 -39.84911 -38.27472 -36.08425 -35.80023 -34.61170 -34.15194 -32.64543 -32.13372 -30.29357 -28.30082 -27.33885 -26.54828 -25.60677 -24.33666 -24.01811 -22.60933 -21.96660 -21.57317 -19.96905 -19.21792 -18.80625 -18.21322 -18.05096 -17.13291 -17.03314 -16.67605 -16.48898 -15.91039 -15.67882 -15.28532 -15.11429 -14.72961 -14.68108 -14.38673 -14.32335 -14.29829 -13.78951 -13.63620 -13.34830 -13.10946 -13.06122 -12.95514 -12.91327 -12.65547 -12.50216 -12.25913 -12.04978 -11.87358 -11.80650 -11.71253 -11.66338 -11.28388 -11.14406 -10.89703 -10.55108 -10.24878 -9.93142 -8.60524 -7.86154 -5.49421 -0.81967 -0.59126 0.49141 0.50389 1.41553 1.46912 1.55700 1.57612 1.84067 2.09220 2.22522 2.48434 2.79962 3.15549 3.22946 3.33324 3.71444 3.75146 3.90739 4.13886 4.21221 4.28711 4.35635 4.38345 4.49216 4.67778 4.68509 4.73349 4.80605 4.85394 4.94692 4.96693 5.00310 5.05537 5.06790 5.18962 5.22172 5.27655 5.41391 5.45114 5.63193 5.64364 5.72325 6.05534 6.22990 6.44851 6.51307 6.80679 7.13850 7.81236 8.33963 9.09816 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002542 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.043728 B =11014.275509 C =12055.299940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.267 4.267 6 H 0.055 0.945 7 C -0.030 4.030 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.144 3.856 14 C 0.118 3.882 15 N -0.681 5.681 16 C 0.605 3.395 17 O -0.547 6.547 18 C 0.229 3.771 19 N -0.528 5.528 20 C 0.420 3.580 21 N -0.477 5.477 22 C 0.224 3.776 23 C -0.147 4.147 24 C -0.097 4.097 25 C 0.134 3.866 26 N -0.324 5.324 27 N -0.295 5.295 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.049 0.951 35 H 0.253 0.747 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.417 0.583 41 H 0.245 0.755 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 -7.356 -27.192 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.315 5.315 5 C -0.398 4.398 6 H 0.073 0.927 7 C -0.229 4.229 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.219 1.219 12 H -0.213 1.213 13 C 0.017 3.983 14 C -0.008 4.008 15 N -0.332 5.332 16 C 0.385 3.615 17 O -0.423 6.423 18 C -0.055 4.055 19 N -0.263 5.263 20 C 0.061 3.939 21 N -0.192 5.192 22 C 0.040 3.960 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.000 4.000 26 N -0.104 5.104 27 N -0.130 5.130 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.254 0.746 41 H 0.261 0.739 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.323 -7.506 -25.991 27.782 hybrid contribution 0.919 -0.559 0.713 1.291 sum 7.242 -8.066 -25.277 27.503 Atomic orbital electron populations 1.21650 0.94273 1.01780 1.01978 1.22028 0.96428 0.98705 1.00418 1.21073 0.83142 0.94641 0.99178 1.43826 1.00925 1.84987 1.01759 1.19190 1.06132 1.19842 0.94610 0.92707 1.25796 1.02228 0.94772 1.00057 1.70098 1.25851 1.15589 1.43804 0.85488 0.79295 0.78099 0.79257 1.19504 1.21913 1.21257 1.20907 0.99459 0.91535 0.86430 1.22246 0.94654 1.01904 0.81962 1.45772 1.55575 1.08787 1.23093 1.16547 0.78957 0.84905 0.81050 1.90796 1.55393 1.27282 1.68814 1.23846 0.98222 0.86580 0.96847 1.70695 1.21447 1.26231 1.07952 1.22846 0.96809 0.79990 0.94280 1.68241 1.13136 1.34580 1.03284 1.24729 0.86080 0.94745 0.90397 1.21272 1.01030 0.93698 0.99406 1.20871 1.00718 1.02888 0.90927 1.22973 0.91308 1.03792 0.81904 1.49041 1.35788 1.09059 1.16519 1.78752 1.18892 1.18263 0.97136 0.92251 0.92546 0.92180 0.93529 0.94069 0.94418 0.93278 0.93756 0.90855 0.93567 0.91958 0.93771 0.74573 0.73907 0.88334 0.89203 0.87316 0.76969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.24 16 2 C -0.14 -5.01 6.23 30.60 0.19 -4.82 16 3 C 0.14 6.10 5.72 86.38 0.49 6.59 16 4 N -0.59 -29.66 2.43 -702.01 -1.71 -31.36 16 5 C -0.27 -14.75 9.45 84.03 0.79 -13.96 16 6 H 0.06 3.05 7.92 -2.92 -0.02 3.03 16 7 C -0.03 -1.70 4.95 84.86 0.42 -1.28 16 8 N -0.91 -52.80 11.47 21.65 0.25 -52.55 16 9 Si 0.95 45.62 29.60 68.60 2.03 47.65 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 13 C 0.14 6.76 5.45 86.38 0.47 7.23 16 14 C 0.12 5.12 6.00 86.38 0.52 5.64 16 15 N -0.68 -27.07 5.55 -465.70 -2.59 -29.66 16 16 C 0.61 25.06 7.84 86.87 0.68 25.74 16 17 O -0.55 -25.55 17.07 -3.77 -0.06 -25.62 16 18 C 0.23 8.67 7.92 137.39 1.09 9.75 16 19 N -0.53 -18.99 10.89 -192.62 -2.10 -21.09 16 20 C 0.42 12.35 8.98 261.57 2.35 14.70 16 21 N -0.48 -10.31 10.48 -197.54 -2.07 -12.38 16 22 C 0.22 1.80 10.96 85.25 0.93 2.73 16 23 C -0.15 -0.73 5.87 -19.99 -0.12 -0.85 16 24 C -0.10 0.44 10.03 71.24 0.71 1.16 16 25 C 0.13 1.67 10.97 83.43 0.92 2.58 16 26 N -0.32 -8.36 3.91 -197.58 -0.77 -9.14 16 27 N -0.29 -10.22 12.78 -52.60 -0.67 -10.89 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.76 6.64 -2.39 -0.02 1.75 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.05 1.91 7.83 -2.39 -0.02 1.89 16 35 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 36 H 0.07 3.91 5.52 -2.39 -0.01 3.90 16 37 H 0.05 2.01 7.86 -2.39 -0.02 1.99 16 38 H 0.06 2.67 6.64 -2.39 -0.02 2.65 16 39 H 0.04 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.42 15.52 8.14 -92.71 -0.76 14.77 16 41 H 0.25 -0.80 8.06 -2.91 -0.02 -0.82 16 42 H 0.10 -0.59 8.14 -2.38 -0.02 -0.61 16 43 H 0.09 -0.51 8.09 -2.39 -0.02 -0.53 16 44 H 0.11 -0.91 8.10 -2.39 -0.02 -0.93 16 45 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -82.40 383.89 2.74 -79.65 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.27 Total: 13.40 kcal Atomic # 6 Polarization: 41.81 SS G_CDS: 10.17 Total: 51.98 kcal Atomic # 7 Polarization: -157.40 SS G_CDS: -9.66 Total: -167.06 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.06 Total: -25.62 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -82.40 2.74 -79.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713546824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.230 kcal (2) G-P(sol) polarization free energy of solvation -82.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds