Wall clock time and date at job start Tue Mar 31 2020 18:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 N 1.46496 * 109.46786 * 120.00108 * 2 1 3 5 5 C 1.36936 * 120.00308 * 302.23561 * 4 2 1 6 6 H 1.07994 * 120.00120 * 321.91328 * 5 4 2 7 7 C 1.38813 * 120.00223 * 141.91166 * 5 4 2 8 8 N 1.31622 * 119.99550 * 338.46517 * 7 5 4 9 9 Si 1.86795 * 120.00167 * 158.46663 * 7 5 4 10 10 H 1.48494 * 109.47545 * 59.99830 * 9 7 5 11 11 H 1.48500 * 109.47483 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46944 * 299.99912 * 9 7 5 13 13 C 1.46507 * 120.00111 * 122.23627 * 4 2 1 14 14 C 1.53003 * 109.47145 * 89.99825 * 13 4 2 15 15 C 1.52999 * 109.47439 * 180.02562 * 14 13 4 16 16 N 1.46493 * 109.47333 * 180.02562 * 15 14 13 17 17 C 1.34773 * 120.00204 * 180.27161 * 16 15 14 18 18 O 1.21571 * 119.99823 * 359.72435 * 17 16 15 19 19 C 1.47721 * 120.00431 * 179.72424 * 17 16 15 20 20 C 1.40116 * 120.34874 * 0.02562 * 19 17 16 21 21 N 1.31262 * 121.15180 * 179.97438 * 20 19 17 22 22 C 1.32715 * 121.79615 * 0.02931 * 21 20 19 23 23 N 1.37122 * 133.40399 * 179.97438 * 22 21 20 24 24 H 0.96999 * 126.58803 * 0.02562 * 23 22 21 25 25 N 1.40184 * 106.81910 * 179.97438 * 23 22 21 26 26 N 1.28660 * 109.51328 * 0.02562 * 25 23 22 27 27 C 1.35332 * 110.00003 * 359.97438 * 26 25 23 28 28 C 1.39431 * 120.35308 * 179.72454 * 19 17 16 29 29 H 1.09000 * 109.46854 * 305.40505 * 1 2 3 30 30 H 1.09000 * 109.46509 * 65.40359 * 1 2 3 31 31 H 1.09000 * 109.47288 * 185.39773 * 1 2 3 32 32 H 1.09001 * 109.47194 * 239.99689 * 2 1 3 33 33 H 1.08996 * 109.47388 * 180.43346 * 3 2 1 34 34 H 1.09000 * 109.47114 * 300.43860 * 3 2 1 35 35 H 1.09002 * 109.47022 * 60.43562 * 3 2 1 36 36 H 0.97006 * 119.99570 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47136 * 330.00180 * 13 4 2 38 38 H 1.08995 * 109.47230 * 209.99738 * 13 4 2 39 39 H 1.09003 * 109.47085 * 59.99764 * 14 13 4 40 40 H 1.09002 * 109.47224 * 300.00397 * 14 13 4 41 41 H 1.08993 * 109.46918 * 59.99776 * 15 14 13 42 42 H 1.09002 * 109.46967 * 300.00224 * 15 14 13 43 43 H 0.96999 * 120.00196 * 0.02562 * 16 15 14 44 44 H 1.08003 * 119.42846 * 0.02562 * 20 19 17 45 45 H 1.07996 * 120.95283 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6501 -0.2502 2.4394 6 1 1.5674 0.8088 2.6345 7 6 1.3831 -1.1648 3.4489 8 7 1.0659 -2.4057 3.1455 9 14 1.4739 -0.6345 5.2377 10 1 0.5007 0.4608 5.4794 11 1 1.1483 -1.7888 6.1134 12 1 2.8456 -0.1540 5.5425 13 6 2.9005 -1.8526 1.0623 14 6 4.3580 -1.3874 1.0483 15 6 5.2794 -2.6008 0.9079 16 7 6.6749 -2.1554 0.8951 17 6 7.6691 -3.0572 0.7737 18 8 7.4079 -4.2409 0.6799 19 6 9.0761 -2.6076 0.7546 20 6 9.3855 -1.2454 0.8627 21 7 10.6301 -0.8285 0.8481 22 6 11.6485 -1.6713 0.7303 23 7 13.0089 -1.5051 0.6880 24 1 13.4908 -0.6651 0.7428 25 7 13.5696 -2.7827 0.5514 26 7 12.6310 -3.6619 0.5124 27 6 11.4251 -3.0566 0.6167 28 6 10.1105 -3.5349 0.6351 29 1 -0.3633 0.5954 0.8376 30 1 -0.3632 0.4278 -0.9344 31 1 -0.3634 -1.0231 0.0967 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0078 34 1 1.6704 1.9585 -0.8860 35 1 1.6832 1.9540 0.8939 36 1 0.8797 -3.0449 3.8510 37 1 2.6765 -2.3736 0.1315 38 1 2.7426 -2.5274 1.9036 39 1 4.5821 -0.8663 1.9791 40 1 4.5159 -0.7125 0.2071 41 1 5.0552 -3.1214 -0.0230 42 1 5.1216 -3.2760 1.7489 43 1 6.8834 -1.2111 0.9703 44 1 8.5861 -0.5258 0.9607 45 1 9.9027 -4.5917 0.5553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713689321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:45 Heat of formation + Delta-G solvation = 102.437979 kcal Electronic energy + Delta-G solvation = -27406.520318 eV Core-core repulsion = 23461.831519 eV Total energy + Delta-G solvation = -3944.688798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.84250 -40.19206 -38.52263 -36.82121 -35.21656 -34.45309 -32.60843 -32.18895 -31.89553 -30.82423 -28.79473 -26.20811 -25.93785 -25.16315 -24.48632 -23.16943 -22.98247 -21.15573 -20.77244 -19.54677 -19.17060 -18.72657 -17.38064 -16.84957 -16.59737 -16.32492 -15.56612 -15.41057 -14.95715 -14.48489 -14.19602 -14.17454 -13.76523 -13.69606 -13.57490 -13.27046 -13.01206 -12.86266 -12.47035 -12.42784 -12.02721 -11.74322 -11.54563 -11.48029 -11.33284 -11.00104 -10.78015 -10.68338 -10.56596 -10.43297 -10.21289 -9.97959 -9.87749 -9.83491 -9.62588 -9.55714 -9.52520 -8.99353 -8.48062 -6.56337 -5.79749 -3.37662 -0.28431 0.16709 1.50856 1.57945 2.49427 2.89984 3.30063 3.34315 3.39567 3.41610 3.42663 3.74787 3.78623 4.13805 4.22176 4.45830 4.58096 4.82217 5.17786 5.22182 5.33103 5.35724 5.59392 5.60885 5.75005 5.92556 5.96919 6.14428 6.15782 6.25460 6.32078 6.35555 6.42060 6.61523 6.67547 6.70055 6.77657 6.79154 6.95899 7.07620 7.18522 7.26671 7.33326 7.41914 7.64474 7.83213 8.06838 8.52622 9.19321 9.81667 10.40940 11.20418 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.002252 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.050394 B =12432.867947 C =12822.290459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.162 3.838 3 C -0.153 4.153 4 N -0.579 5.579 5 C -0.254 4.254 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.152 3.848 14 C -0.147 4.147 15 C 0.120 3.880 16 N -0.716 5.716 17 C 0.563 3.437 18 O -0.531 6.531 19 C -0.203 4.203 20 C 0.215 3.785 21 N -0.488 5.488 22 C 0.293 3.707 23 N -0.483 5.483 24 H 0.454 0.546 25 N 0.018 4.982 26 N -0.190 5.190 27 C -0.075 4.075 28 C 0.083 3.917 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.255 0.745 37 H 0.025 0.975 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.398 0.602 44 H 0.181 0.819 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.167 3.445 -6.482 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.299 5.299 5 C -0.384 4.384 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.025 3.975 14 C -0.188 4.188 15 C -0.003 4.003 16 N -0.367 5.367 17 C 0.348 3.652 18 O -0.409 6.409 19 C -0.212 4.212 20 C 0.041 3.959 21 N -0.202 5.202 22 C 0.048 3.952 23 N -0.209 5.209 24 H 0.303 0.697 25 N 0.035 4.965 26 N -0.072 5.072 27 C -0.200 4.200 28 C 0.052 3.948 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.233 0.767 44 H 0.198 0.802 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 19.435 2.451 -6.508 20.642 hybrid contribution -0.487 1.121 1.150 1.679 sum 18.948 3.572 -5.358 20.013 Atomic orbital electron populations 1.22061 0.97893 1.01582 0.98937 1.20414 0.92463 0.91775 0.89816 1.22179 1.00046 0.99005 1.00036 1.43832 1.51733 1.33257 1.01061 1.18842 1.41687 0.91241 0.86650 0.92363 1.25172 0.98470 0.96436 0.98599 1.69995 1.46778 1.04186 1.31785 0.86547 0.78142 0.77609 0.85510 1.20844 1.21703 1.20989 1.20780 0.84886 0.90864 1.00994 1.22534 0.98801 0.95843 1.01606 1.21577 0.77728 0.98645 1.02318 1.46088 1.07242 1.09904 1.73460 1.17694 0.83912 0.86165 0.77400 1.90824 1.84049 1.16314 1.49682 1.20878 0.95261 0.94731 1.10294 1.23142 0.91877 0.93454 0.87403 1.66707 0.98154 1.37127 1.18196 1.19605 0.86837 0.91385 0.97359 1.47546 1.02767 1.10860 1.59682 0.69737 1.81747 1.17057 0.83293 1.14398 1.74907 0.97028 1.24195 1.11041 1.20410 0.94317 0.91601 1.13663 1.21113 0.86820 1.01940 0.84881 0.92785 0.95305 0.92997 0.93704 0.93885 0.94617 0.92788 0.93529 0.95640 0.88775 0.91502 0.93104 0.91530 0.91044 0.76720 0.80235 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.03 37.16 0.34 -2.51 16 2 C 0.16 3.16 3.36 -67.93 -0.23 2.93 16 3 C -0.15 -2.64 9.20 37.15 0.34 -2.30 16 4 N -0.58 -12.96 2.36 -165.66 -0.39 -13.35 16 5 C -0.25 -6.36 8.23 -15.06 -0.12 -6.48 16 6 H 0.06 1.48 6.95 -52.49 -0.36 1.11 16 7 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 8 N -0.89 -24.14 11.52 55.49 0.64 -23.50 16 9 Si 0.89 20.60 29.61 -169.99 -5.03 15.57 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 C 0.15 3.16 5.27 -4.04 -0.02 3.14 16 14 C -0.15 -2.40 5.65 -26.73 -0.15 -2.55 16 15 C 0.12 1.74 5.67 -4.05 -0.02 1.72 16 16 N -0.72 -8.21 5.51 -61.30 -0.34 -8.55 16 17 C 0.56 6.98 7.77 -12.39 -0.10 6.88 16 18 O -0.53 -8.57 16.39 5.30 0.09 -8.49 16 19 C -0.20 -1.99 5.88 -104.87 -0.62 -2.61 16 20 C 0.21 1.74 10.69 -17.09 -0.18 1.56 16 21 N -0.49 -4.52 10.37 -12.03 -0.12 -4.65 16 22 C 0.29 2.85 8.49 -155.93 -1.32 1.52 16 23 N -0.48 -3.78 7.52 31.15 0.23 -3.55 16 24 H 0.45 1.93 8.96 -182.53 -1.64 0.29 16 25 N 0.02 0.18 13.82 60.35 0.83 1.01 16 26 N -0.19 -2.14 12.40 32.17 0.40 -1.74 16 27 C -0.07 -0.79 7.27 -84.74 -0.62 -1.41 16 28 C 0.08 0.84 9.75 -38.51 -0.38 0.46 16 29 H 0.05 1.12 7.80 -51.93 -0.40 0.72 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.82 7.78 -51.93 -0.40 0.42 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 1.00 7.06 -51.93 -0.37 0.63 16 36 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 38 H 0.09 2.27 5.56 -51.93 -0.29 1.99 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.40 3.37 6.51 -40.82 -0.27 3.11 16 44 H 0.18 0.90 6.39 -52.48 -0.34 0.57 16 45 H 0.17 1.59 7.71 -52.49 -0.40 1.19 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -30.88 378.13 -8.56 -39.44 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.40 Total: 1.46 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.17 Total: 0.64 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 1.25 Total: -54.33 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.88 -8.56 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713689321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.879 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds