Wall clock time and date at job start Tue Mar 31 2020 18:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 N 1.46496 * 109.46786 * 120.00108 * 2 1 3 5 5 C 1.36936 * 120.00308 * 302.23561 * 4 2 1 6 6 H 1.07994 * 120.00120 * 321.91328 * 5 4 2 7 7 C 1.38813 * 120.00223 * 141.91166 * 5 4 2 8 8 N 1.31622 * 119.99550 * 338.46517 * 7 5 4 9 9 Si 1.86795 * 120.00167 * 158.46663 * 7 5 4 10 10 H 1.48494 * 109.47545 * 59.99830 * 9 7 5 11 11 H 1.48500 * 109.47483 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46944 * 299.99912 * 9 7 5 13 13 C 1.46507 * 120.00111 * 122.23627 * 4 2 1 14 14 C 1.53003 * 109.47145 * 89.99825 * 13 4 2 15 15 C 1.52999 * 109.47439 * 180.02562 * 14 13 4 16 16 N 1.46493 * 109.47333 * 180.02562 * 15 14 13 17 17 C 1.34773 * 120.00204 * 180.27161 * 16 15 14 18 18 O 1.21571 * 119.99823 * 359.72435 * 17 16 15 19 19 C 1.47721 * 120.00431 * 179.72424 * 17 16 15 20 20 C 1.40116 * 120.34874 * 0.02562 * 19 17 16 21 21 N 1.31262 * 121.15180 * 179.97438 * 20 19 17 22 22 C 1.32715 * 121.79615 * 0.02931 * 21 20 19 23 23 N 1.37122 * 133.40399 * 179.97438 * 22 21 20 24 24 H 0.96999 * 126.58803 * 0.02562 * 23 22 21 25 25 N 1.40184 * 106.81910 * 179.97438 * 23 22 21 26 26 N 1.28660 * 109.51328 * 0.02562 * 25 23 22 27 27 C 1.35332 * 110.00003 * 359.97438 * 26 25 23 28 28 C 1.39431 * 120.35308 * 179.72454 * 19 17 16 29 29 H 1.09000 * 109.46854 * 305.40505 * 1 2 3 30 30 H 1.09000 * 109.46509 * 65.40359 * 1 2 3 31 31 H 1.09000 * 109.47288 * 185.39773 * 1 2 3 32 32 H 1.09001 * 109.47194 * 239.99689 * 2 1 3 33 33 H 1.08996 * 109.47388 * 180.43346 * 3 2 1 34 34 H 1.09000 * 109.47114 * 300.43860 * 3 2 1 35 35 H 1.09002 * 109.47022 * 60.43562 * 3 2 1 36 36 H 0.97006 * 119.99570 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47136 * 330.00180 * 13 4 2 38 38 H 1.08995 * 109.47230 * 209.99738 * 13 4 2 39 39 H 1.09003 * 109.47085 * 59.99764 * 14 13 4 40 40 H 1.09002 * 109.47224 * 300.00397 * 14 13 4 41 41 H 1.08993 * 109.46918 * 59.99776 * 15 14 13 42 42 H 1.09002 * 109.46967 * 300.00224 * 15 14 13 43 43 H 0.96999 * 120.00196 * 0.02562 * 16 15 14 44 44 H 1.08003 * 119.42846 * 0.02562 * 20 19 17 45 45 H 1.07996 * 120.95283 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6501 -0.2502 2.4394 6 1 1.5674 0.8088 2.6345 7 6 1.3831 -1.1648 3.4489 8 7 1.0659 -2.4057 3.1455 9 14 1.4739 -0.6345 5.2377 10 1 0.5007 0.4608 5.4794 11 1 1.1483 -1.7888 6.1134 12 1 2.8456 -0.1540 5.5425 13 6 2.9005 -1.8526 1.0623 14 6 4.3580 -1.3874 1.0483 15 6 5.2794 -2.6008 0.9079 16 7 6.6749 -2.1554 0.8951 17 6 7.6691 -3.0572 0.7737 18 8 7.4079 -4.2409 0.6799 19 6 9.0761 -2.6076 0.7546 20 6 9.3855 -1.2454 0.8627 21 7 10.6301 -0.8285 0.8481 22 6 11.6485 -1.6713 0.7303 23 7 13.0089 -1.5051 0.6880 24 1 13.4908 -0.6651 0.7428 25 7 13.5696 -2.7827 0.5514 26 7 12.6310 -3.6619 0.5124 27 6 11.4251 -3.0566 0.6167 28 6 10.1105 -3.5349 0.6351 29 1 -0.3633 0.5954 0.8376 30 1 -0.3632 0.4278 -0.9344 31 1 -0.3634 -1.0231 0.0967 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0078 34 1 1.6704 1.9585 -0.8860 35 1 1.6832 1.9540 0.8939 36 1 0.8797 -3.0449 3.8510 37 1 2.6765 -2.3736 0.1315 38 1 2.7426 -2.5274 1.9036 39 1 4.5821 -0.8663 1.9791 40 1 4.5159 -0.7125 0.2071 41 1 5.0552 -3.1214 -0.0230 42 1 5.1216 -3.2760 1.7489 43 1 6.8834 -1.2111 0.9703 44 1 8.5861 -0.5258 0.9607 45 1 9.9027 -4.5917 0.5553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713689321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:44 Heat of formation + Delta-G solvation = 81.634031 kcal Electronic energy + Delta-G solvation = -27407.422445 eV Core-core repulsion = 23461.831519 eV Total energy + Delta-G solvation = -3945.590925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.58472 -41.13925 -39.37696 -38.43016 -36.42444 -35.21269 -34.24153 -33.37249 -32.89224 -31.84754 -30.32035 -27.68232 -27.32244 -26.07472 -25.63257 -24.36778 -23.90249 -22.35415 -21.93710 -21.23661 -19.89609 -19.63017 -18.28396 -17.96601 -17.67714 -17.35049 -16.93160 -16.57409 -16.48567 -15.88939 -15.63254 -15.18409 -14.96043 -14.79006 -14.50476 -14.38360 -14.18810 -14.01872 -13.77177 -13.26700 -13.21270 -13.18931 -13.08614 -12.78853 -12.75562 -12.62537 -12.44585 -12.29652 -12.08654 -11.88177 -11.65168 -11.47114 -11.23439 -11.15493 -10.76953 -10.56974 -10.40276 -10.39146 -10.03224 -8.41996 -7.71326 -5.32578 -1.01486 -0.60813 0.82619 0.85699 1.49727 1.53013 1.57717 1.60526 1.94156 2.47196 2.57628 2.67089 3.00551 3.04525 3.34341 3.39482 3.53197 3.69128 3.74091 4.09540 4.28796 4.37440 4.42068 4.47515 4.60140 4.65010 4.71593 4.81519 4.88420 4.90701 5.01981 5.03791 5.19177 5.22930 5.26232 5.29503 5.42765 5.59262 5.62445 5.68248 5.73848 5.82427 5.97666 6.25326 6.47115 6.53714 6.59568 7.11747 7.30530 8.01375 8.53357 9.23635 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.002252 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.050394 B =12432.867947 C =12822.290459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.153 3.847 3 C -0.142 4.142 4 N -0.593 5.593 5 C -0.243 4.243 6 H 0.055 0.945 7 C -0.035 4.035 8 N -0.917 5.917 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.301 1.301 12 H -0.277 1.277 13 C 0.149 3.851 14 C -0.124 4.124 15 C 0.133 3.867 16 N -0.703 5.703 17 C 0.568 3.432 18 O -0.573 6.573 19 C -0.202 4.202 20 C 0.228 3.772 21 N -0.490 5.490 22 C 0.290 3.710 23 N -0.464 5.464 24 H 0.470 0.530 25 N 0.013 4.987 26 N -0.212 5.212 27 C -0.088 4.088 28 C 0.082 3.918 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.247 0.753 37 H 0.026 0.974 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.416 0.584 44 H 0.215 0.785 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.496 5.934 -7.430 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 C -0.201 4.201 4 N -0.314 5.314 5 C -0.374 4.374 6 H 0.073 0.927 7 C -0.233 4.233 8 N -0.562 5.562 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.228 1.228 12 H -0.203 1.203 13 C 0.022 3.978 14 C -0.164 4.164 15 C 0.009 3.991 16 N -0.355 5.355 17 C 0.355 3.645 18 O -0.454 6.454 19 C -0.211 4.211 20 C 0.054 3.946 21 N -0.204 5.204 22 C 0.044 3.956 23 N -0.192 5.192 24 H 0.321 0.679 25 N 0.030 4.970 26 N -0.093 5.093 27 C -0.214 4.214 28 C 0.051 3.949 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.254 0.746 44 H 0.231 0.769 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 20.817 5.009 -7.469 22.677 hybrid contribution -0.909 0.384 1.361 1.681 sum 19.908 5.394 -6.108 21.512 Atomic orbital electron populations 1.21990 0.98216 0.99596 0.99940 1.20659 0.92292 0.93239 0.89146 1.22027 1.00595 0.96936 1.00510 1.44071 1.52511 1.33526 1.01279 1.18984 1.39707 0.90955 0.87784 0.92732 1.25736 0.99411 0.96615 1.01496 1.70131 1.48968 1.05044 1.32029 0.85719 0.78243 0.76704 0.82025 1.20644 1.22801 1.20261 1.20701 0.87473 0.90129 0.99457 1.22152 0.95936 0.96373 1.01973 1.21214 0.79107 0.97437 1.01377 1.45811 1.05839 1.10861 1.72972 1.17942 0.84798 0.85492 0.76272 1.90813 1.84755 1.18172 1.51610 1.20603 0.93398 0.95581 1.11469 1.23620 0.92323 0.93099 0.85510 1.66848 0.98249 1.36672 1.18592 1.19763 0.87500 0.91147 0.97159 1.47536 1.02306 1.11046 1.58279 0.67851 1.81692 1.16999 0.83894 1.14414 1.74897 0.97458 1.24926 1.12058 1.20513 0.94268 0.92190 1.14440 1.21156 0.86974 1.02142 0.84597 0.94720 0.91831 0.95876 0.92185 0.92911 0.91790 0.94571 0.94392 0.95530 0.92416 0.92474 0.90856 0.91617 0.93307 0.74607 0.76881 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.03 71.98 0.65 -4.60 16 2 C 0.15 5.65 3.36 44.99 0.15 5.80 16 3 C -0.14 -4.42 9.20 71.98 0.66 -3.76 16 4 N -0.59 -26.18 2.36 -678.04 -1.60 -27.78 16 5 C -0.24 -12.13 8.23 84.03 0.69 -11.44 16 6 H 0.06 2.74 6.95 -2.91 -0.02 2.72 16 7 C -0.04 -1.86 4.94 84.86 0.42 -1.44 16 8 N -0.92 -51.50 11.52 21.65 0.25 -51.26 16 9 Si 0.94 42.76 29.61 68.60 2.03 44.79 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.15 6.18 5.27 86.38 0.46 6.64 16 14 C -0.12 -3.84 5.65 30.59 0.17 -3.67 16 15 C 0.13 3.72 5.67 86.38 0.49 4.21 16 16 N -0.70 -14.65 5.51 -466.12 -2.57 -17.22 16 17 C 0.57 13.36 7.77 86.75 0.67 14.03 16 18 O -0.57 -18.49 16.39 -3.94 -0.06 -18.55 16 19 C -0.20 -3.60 5.88 -20.03 -0.12 -3.72 16 20 C 0.23 3.01 10.69 85.23 0.91 3.92 16 21 N -0.49 -7.70 10.37 -191.98 -1.99 -9.69 16 22 C 0.29 5.07 8.49 134.01 1.14 6.20 16 23 N -0.46 -6.42 7.52 -55.37 -0.42 -6.84 16 24 H 0.47 2.97 8.96 -213.27 -1.91 1.05 16 25 N 0.01 0.25 13.82 37.02 0.51 0.76 16 26 N -0.21 -4.65 12.40 -52.14 -0.65 -5.30 16 27 C -0.09 -1.79 7.27 39.63 0.29 -1.50 16 28 C 0.08 1.60 9.75 22.96 0.22 1.82 16 29 H 0.03 1.41 7.80 -2.39 -0.02 1.39 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 2.04 7.78 -2.39 -0.02 2.02 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.24 7.06 -2.39 -0.02 1.23 16 36 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 37 H 0.03 1.06 7.90 -2.39 -0.02 1.04 16 38 H 0.06 2.87 5.56 -2.39 -0.01 2.86 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.42 5.61 6.51 -92.71 -0.60 5.01 16 44 H 0.21 1.20 6.39 -2.91 -0.02 1.18 16 45 H 0.17 3.20 7.71 -2.91 -0.02 3.17 16 Total: -1.00 -68.06 378.13 0.85 -67.21 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -1.47 Total: 11.37 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.81 Total: 12.51 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -6.46 Total: -117.33 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.06 0.85 -67.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713689321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.843 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds