Wall clock time and date at job start Tue Mar 31 2020 16:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46972 * 2 1 4 4 C 1.34773 * 119.99916 * 270.00005 * 3 2 1 5 5 O 1.21284 * 120.00089 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.00375 * 0.02562 * 4 3 2 7 7 S 1.80997 * 109.47389 * 179.97438 * 6 4 3 8 8 C 1.76201 * 100.00103 * 180.02562 * 7 6 4 9 9 H 1.08004 * 119.99968 * 0.02562 * 8 7 6 10 10 C 1.38794 * 120.00260 * 180.02562 * 8 7 6 11 11 N 1.31627 * 120.00500 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99822 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47116 * 89.99901 * 12 10 8 14 14 H 1.48504 * 109.47043 * 209.99991 * 12 10 8 15 15 H 1.48497 * 109.46989 * 329.99697 * 12 10 8 16 16 C 1.46503 * 119.99870 * 90.00305 * 3 2 1 17 17 H 1.08994 * 110.64197 * 358.29913 * 16 3 2 18 18 C 1.54593 * 110.72271 * 121.45148 * 16 3 2 19 19 C 1.54000 * 105.13967 * 140.49090 * 18 16 3 20 20 N 1.47899 * 107.05305 * 1.22545 * 19 18 16 21 21 C 1.46908 * 110.99688 * 214.15084 * 20 19 18 22 22 C 1.52995 * 109.47034 * 175.70799 * 21 20 19 23 23 C 1.52998 * 109.47066 * 174.87885 * 22 21 20 24 24 H 1.09005 * 109.47090 * 55.00133 * 23 22 21 25 25 C 1.52995 * 109.47515 * 175.00139 * 23 22 21 26 26 F 1.39906 * 109.47173 * 295.00475 * 23 22 21 27 27 C 1.48532 * 105.82406 * 334.66791 * 20 19 18 28 28 H 1.08998 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47221 * 300.00048 * 1 2 3 30 30 H 1.09004 * 109.47367 * 59.99959 * 1 2 3 31 31 H 1.08998 * 109.46829 * 239.99939 * 2 1 3 32 32 H 1.08998 * 109.46747 * 120.00346 * 2 1 3 33 33 H 1.08997 * 109.47248 * 300.00178 * 6 4 3 34 34 H 1.09009 * 109.46883 * 60.00111 * 6 4 3 35 35 H 0.96999 * 120.00387 * 180.02562 * 11 10 8 36 36 H 1.09006 * 110.31190 * 21.57492 * 18 16 3 37 37 H 1.08997 * 110.30873 * 259.40961 * 18 16 3 38 38 H 1.08995 * 109.91751 * 241.87088 * 19 18 16 39 39 H 1.08999 * 109.91506 * 120.57683 * 19 18 16 40 40 H 1.09000 * 109.46428 * 55.70806 * 21 20 19 41 41 H 1.08995 * 109.46851 * 295.71579 * 21 20 19 42 42 H 1.09004 * 109.47045 * 54.88373 * 22 21 20 43 43 H 1.08991 * 109.47272 * 294.88318 * 22 21 20 44 44 H 1.09001 * 109.47774 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.46929 * 300.00459 * 25 23 22 46 46 H 1.09005 * 109.46945 * 59.99906 * 25 23 22 47 47 H 1.09004 * 110.66782 * 157.64826 * 27 20 19 48 48 H 1.08999 * 110.66311 * 280.77345 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6476 3.1599 -1.1672 6 6 1.9912 1.3064 -2.4723 7 16 2.3827 2.4155 -3.8480 8 6 2.0081 1.3600 -5.2082 9 1 1.6524 0.3558 -5.0305 10 6 2.1700 1.8189 -6.5081 11 7 1.8897 1.0306 -7.5242 12 14 2.7859 3.5555 -6.8154 13 1 4.2686 3.5476 -6.8977 14 1 2.2220 4.0619 -8.0925 15 1 2.3567 4.4375 -5.7005 16 6 2.2625 2.0718 1.2688 17 1 2.0038 1.4305 2.1113 18 6 3.7344 2.5345 1.3652 19 6 3.6763 3.9263 2.0219 20 7 2.2533 4.2128 2.3058 21 6 1.9638 5.6448 2.1519 22 6 0.4658 5.8862 2.3481 23 6 0.1828 7.3894 2.3148 24 1 0.5736 7.8123 1.3892 25 6 -1.3271 7.6259 2.3858 26 9 0.8032 8.0051 3.4072 27 6 1.4754 3.4048 1.3322 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.6211 0.4187 -2.5303 34 1 0.9431 1.0126 -2.5299 35 1 2.0033 1.3512 -8.4326 36 1 4.1753 2.6036 0.3707 37 1 4.3073 1.8465 1.9869 38 1 4.0770 4.6758 1.3395 39 1 4.2469 3.9228 2.9506 40 1 2.2565 5.9693 1.1533 41 1 2.5237 6.2107 2.8964 42 1 0.1552 5.4793 3.3104 43 1 -0.0891 5.3942 1.5494 44 1 -1.5288 8.6968 2.3616 45 1 -1.8104 7.1462 1.5347 46 1 -1.7179 7.2030 3.3114 47 1 0.4616 3.2360 1.6954 48 1 1.4597 3.8892 0.3559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715035753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:36 Heat of formation + Delta-G solvation = -108.604712 kcal Electronic energy + Delta-G solvation = -27225.781927 eV Core-core repulsion = 23355.172869 eV Total energy + Delta-G solvation = -3870.609057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.62605 -41.57641 -39.30086 -36.98747 -35.42073 -34.69112 -32.88243 -31.16592 -30.98933 -29.25533 -28.52116 -27.83781 -24.58490 -24.27486 -22.94336 -22.08762 -21.65533 -20.41654 -19.33798 -18.04152 -17.79408 -17.65716 -17.12479 -16.77030 -16.54834 -16.32908 -16.02847 -15.78183 -15.27329 -15.09231 -14.90482 -14.85292 -14.72268 -14.56042 -14.20508 -13.93457 -13.66528 -13.40750 -13.36200 -13.18013 -13.08740 -13.03461 -12.83499 -12.66400 -12.63728 -12.49738 -12.30944 -12.10967 -11.90265 -11.87530 -11.76197 -11.62514 -11.55185 -11.19200 -10.66886 -10.53687 -9.71501 -9.47928 -9.01153 -8.53456 -6.23922 0.96478 1.28712 1.43355 1.51627 1.53442 2.02649 2.22419 2.66487 2.84905 2.92827 3.50273 3.59566 3.65123 3.73397 3.79731 3.84521 3.95970 4.00813 4.11986 4.15308 4.29276 4.32099 4.36432 4.38430 4.44511 4.46490 4.55730 4.60229 4.67683 4.74221 4.81071 4.86497 4.89103 4.98221 5.01246 5.03395 5.06381 5.15107 5.17170 5.22823 5.37539 5.58342 5.69057 5.86995 5.94747 6.09686 6.28916 6.91939 7.12140 8.59117 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.003222 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.614402 B = 8687.468217 C = 9992.090814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.597 5.597 4 C 0.534 3.466 5 O -0.548 6.548 6 C -0.107 4.107 7 S -0.175 6.175 8 C -0.527 4.527 9 H 0.062 0.938 10 C 0.047 3.953 11 N -0.917 5.917 12 Si 0.913 3.087 13 H -0.263 1.263 14 H -0.259 1.259 15 H -0.238 1.238 16 C 0.150 3.850 17 H 0.134 0.866 18 C -0.138 4.138 19 C 0.044 3.956 20 N -0.507 5.507 21 C 0.048 3.952 22 C -0.134 4.134 23 C 0.084 3.916 24 H 0.083 0.917 25 C -0.175 4.175 26 F -0.228 7.228 27 C 0.020 3.980 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.277 0.723 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.026 0.974 39 H 0.095 0.905 40 H 0.021 0.979 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 3.320 24.836 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.330 5.330 4 C 0.322 3.678 5 O -0.426 6.426 6 C -0.258 4.258 7 S 0.052 5.948 8 C -0.675 4.675 9 H 0.080 0.920 10 C -0.159 4.159 11 N -0.555 5.555 12 Si 0.735 3.265 13 H -0.188 1.188 14 H -0.183 1.183 15 H -0.162 1.162 16 C 0.046 3.954 17 H 0.151 0.849 18 C -0.177 4.177 19 C -0.084 4.084 20 N -0.231 5.231 21 C -0.081 4.081 22 C -0.172 4.172 23 C 0.047 3.953 24 H 0.101 0.899 25 C -0.233 4.233 26 F -0.210 7.210 27 C -0.108 4.108 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.045 0.955 39 H 0.114 0.886 40 H 0.039 0.961 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.380 4.826 25.224 25.903 hybrid contribution 0.079 -0.562 -1.886 1.970 sum -3.301 4.264 23.337 23.952 Atomic orbital electron populations 1.22196 0.95066 1.03443 1.01985 1.21918 0.95169 0.80332 1.04996 1.47966 1.65631 1.15231 1.04199 1.19908 0.76842 0.86018 0.85065 1.90650 1.45782 1.18789 1.87368 1.23334 1.06120 1.02283 0.94040 1.84658 1.88392 1.22900 0.98885 1.22447 1.51085 1.01437 0.92511 0.92026 1.25536 0.94012 1.01530 0.94782 1.70009 1.47809 1.38148 0.99544 0.85886 0.79893 0.80624 0.80066 1.18776 1.18307 1.16182 1.22067 0.94331 0.93633 0.85354 0.84876 1.22713 0.97211 0.96842 1.00899 1.22762 0.90005 0.95920 0.99749 1.64867 1.04893 1.06100 1.47225 1.22257 0.97182 0.89198 0.99444 1.22135 0.95654 0.94966 1.04465 1.21689 0.94379 0.92485 0.86741 0.89878 1.22341 0.92964 1.03631 1.04331 1.92782 1.85013 1.84897 1.58259 1.23588 0.98281 0.94019 0.94949 0.89504 0.91414 0.94381 0.90303 0.86873 0.87542 0.87554 0.91353 0.93045 0.88691 0.95528 0.88647 0.96109 0.90255 0.89397 0.90041 0.90976 0.89714 0.90925 0.89017 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 71.98 0.74 -1.85 16 2 C 0.10 1.59 5.91 86.38 0.51 2.10 16 3 N -0.60 -13.88 2.54 -791.18 -2.01 -15.89 16 4 C 0.53 17.86 6.82 87.66 0.60 18.45 16 5 O -0.55 -22.03 12.20 -3.04 -0.04 -22.07 16 6 C -0.11 -4.01 4.71 71.24 0.34 -3.68 16 7 S -0.17 -8.75 18.55 -56.49 -1.05 -9.80 16 8 C -0.53 -30.50 10.04 67.95 0.68 -29.82 16 9 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 10 C 0.05 2.74 5.50 84.86 0.47 3.20 16 11 N -0.92 -55.64 13.97 21.65 0.30 -55.33 16 12 Si 0.91 44.87 27.74 68.60 1.90 46.78 16 13 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 16 C 0.15 3.04 3.54 46.19 0.16 3.21 16 17 H 0.13 1.87 7.88 -2.39 -0.02 1.85 16 18 C -0.14 -3.06 6.16 31.47 0.19 -2.87 16 19 C 0.04 0.98 6.70 86.45 0.58 1.56 16 20 N -0.51 -11.17 5.35 -883.02 -4.73 -15.89 16 21 C 0.05 1.05 4.80 86.30 0.41 1.47 16 22 C -0.13 -2.42 4.66 30.59 0.14 -2.28 16 23 C 0.08 1.45 3.96 30.59 0.12 1.57 16 24 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 25 C -0.18 -2.31 9.65 71.98 0.69 -1.61 16 26 F -0.23 -4.97 16.68 44.97 0.75 -4.22 16 27 C 0.02 0.47 4.70 86.65 0.41 0.88 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.04 0.77 7.22 -2.39 -0.02 0.75 16 31 H 0.08 1.41 6.44 -2.39 -0.02 1.39 16 32 H 0.11 1.14 7.96 -2.39 -0.02 1.12 16 33 H 0.11 3.74 7.40 -2.40 -0.02 3.72 16 34 H 0.11 3.77 7.19 -2.39 -0.02 3.75 16 35 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.05 1.52 6.32 -2.38 -0.02 1.51 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 0.71 7.67 -2.39 -0.02 0.69 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.02 0.54 7.97 -2.39 -0.02 0.52 16 41 H 0.08 1.73 7.81 -2.39 -0.02 1.71 16 42 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.08 1.47 7.18 -2.39 -0.02 1.45 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.09 1.82 7.77 -2.39 -0.02 1.80 16 48 H 0.04 1.31 5.66 -2.39 -0.01 1.29 16 Total: -1.00 -71.45 389.45 2.07 -69.38 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.89 Total: 16.71 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 6.05 Total: -9.66 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -6.43 Total: -87.12 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.07 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.75 Total: -4.22 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.78 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -71.45 2.07 -69.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715035753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.225 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds