Wall clock time and date at job start Tue Mar 31 2020 18:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99568 * 2 1 4 4 C 1.53006 * 109.46800 * 269.99252 * 3 2 1 5 5 C 1.53002 * 109.47271 * 300.00386 * 4 3 2 6 6 C 1.52994 * 109.46890 * 60.00389 * 4 3 2 7 7 C 1.53000 * 109.47094 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.47444 * 180.02562 * 7 4 3 9 9 C 1.36934 * 120.00606 * 179.97438 * 8 7 4 10 10 H 1.08002 * 119.99500 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00160 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99848 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00113 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47283 * 89.99851 * 13 11 9 15 15 H 1.48505 * 109.47132 * 209.99947 * 13 11 9 16 16 H 1.48502 * 109.47235 * 329.99632 * 13 11 9 17 17 C 1.34771 * 120.00503 * 179.97438 * 2 1 3 18 18 O 1.21626 * 120.00513 * 184.16315 * 17 2 1 19 19 C 1.47311 * 119.99704 * 4.16686 * 17 2 1 20 20 C 1.39006 * 120.90454 * 312.92670 * 19 17 2 21 21 C 1.39720 * 119.29165 * 180.23038 * 20 19 17 22 22 C 1.35259 * 121.07908 * 359.49895 * 21 20 19 23 23 N 1.35719 * 121.57262 * 0.49567 * 22 21 20 24 24 N 1.40207 * 134.08990 * 179.75049 * 23 22 21 25 25 N 1.29014 * 106.96229 * 180.02562 * 24 23 22 26 26 N 1.28591 * 110.78318 * 359.97438 * 25 24 23 27 27 C 1.32036 * 110.21880 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47947 * 270.49037 * 1 2 3 29 29 H 1.09002 * 109.47481 * 30.49666 * 1 2 3 30 30 H 1.09002 * 109.46641 * 150.48824 * 1 2 3 31 31 H 1.08991 * 109.47912 * 29.99279 * 3 2 1 32 32 H 1.09001 * 109.47081 * 149.99676 * 3 2 1 33 33 H 1.08998 * 109.46988 * 59.99763 * 5 4 3 34 34 H 1.08996 * 109.46889 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46671 * 299.99711 * 5 4 3 36 36 H 1.09001 * 109.47633 * 60.00181 * 6 4 3 37 37 H 1.09005 * 109.47176 * 179.97438 * 6 4 3 38 38 H 1.08997 * 109.47407 * 299.99624 * 6 4 3 39 39 H 1.09004 * 109.46975 * 300.00127 * 7 4 3 40 40 H 1.08997 * 109.47513 * 59.99882 * 7 4 3 41 41 H 0.97008 * 119.99481 * 359.97438 * 8 7 4 42 42 H 0.97002 * 120.00282 * 179.97438 * 12 11 9 43 43 H 1.08000 * 120.35504 * 359.95181 * 20 19 17 44 44 H 1.07998 * 119.46190 * 179.74317 * 21 20 19 45 45 H 1.08001 * 119.21603 * 180.26067 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8932 -2.1639 7 6 3.2179 3.0351 -1.4427 8 7 3.4617 3.4582 -2.8238 9 6 4.1347 4.6242 -3.0742 10 1 4.4854 5.2321 -2.2533 11 6 4.3660 5.0248 -4.3829 12 7 5.0125 6.1458 -4.6235 13 14 3.7587 3.9737 -5.8027 14 1 2.3856 4.3954 -6.1788 15 1 4.6650 4.1429 -6.9669 16 1 3.7431 2.5469 -5.3910 17 6 2.1389 -1.1671 0.0005 18 8 3.3528 -1.1685 0.0770 19 6 1.4053 -2.4412 -0.0916 20 6 0.2923 -2.6834 0.7051 21 6 -0.3754 -3.9057 0.5935 22 6 0.0380 -4.8497 -0.2827 23 7 1.1193 -4.6548 -1.0795 24 7 1.7672 -5.4302 -2.0514 25 7 2.7578 -4.7308 -2.4920 26 7 2.8085 -3.5893 -1.9021 27 6 1.8278 -3.4855 -1.0241 28 1 -0.3635 0.0088 1.0276 29 1 -0.3634 0.8855 -0.5215 30 1 -0.3633 -0.8944 -0.5063 31 1 1.6083 2.0285 0.5137 32 1 3.1498 1.1385 0.5139 33 1 2.7344 -0.3000 -2.1636 34 1 3.4607 0.9584 -3.1915 35 1 4.2318 0.5138 -1.6498 36 1 0.5265 2.6529 -1.6502 37 1 1.2973 2.2082 -3.1915 38 1 0.5707 0.9492 -2.1639 39 1 2.6291 3.7950 -0.9288 40 1 4.1703 2.9045 -0.9289 41 1 3.1463 2.9123 -3.5611 42 1 5.1745 6.4256 -5.5380 43 1 -0.0501 -1.9366 1.4061 44 1 -1.2379 -4.0984 1.2141 45 1 -0.5030 -5.7822 -0.3470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717453635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:24 Heat of formation + Delta-G solvation = 147.549510 kcal Electronic energy + Delta-G solvation = -29145.548073 eV Core-core repulsion = 25202.815457 eV Total energy + Delta-G solvation = -3942.732615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.76471 -40.65603 -38.96115 -37.50366 -35.47293 -34.40734 -33.07557 -32.50729 -31.17524 -30.53304 -28.16154 -27.09981 -26.48838 -25.91618 -25.03466 -24.75346 -23.51441 -22.04874 -20.35194 -19.19499 -18.66957 -18.15442 -17.61314 -17.44454 -17.20699 -16.46498 -16.25848 -15.80070 -14.74312 -14.45086 -14.30326 -14.04877 -13.90395 -13.71358 -13.60053 -13.37952 -13.18273 -12.97068 -12.87375 -12.81579 -12.62221 -12.35287 -12.26496 -11.82454 -11.38922 -11.35189 -11.32501 -11.25769 -10.84776 -10.80319 -10.71672 -10.47441 -10.35576 -10.15972 -9.90060 -9.52212 -9.13110 -8.83531 -8.79658 -7.15036 -5.71206 -3.05349 -0.48897 -0.01077 1.14204 1.72876 2.09102 2.43755 2.80504 3.07491 3.41559 3.42532 3.46133 3.50005 3.80158 3.85417 4.14556 4.48617 4.64843 4.67895 4.75708 4.81025 4.88321 4.96117 5.03892 5.07192 5.11111 5.24350 5.29515 5.31845 5.52265 5.62237 5.69990 5.77222 5.81846 5.85178 5.99057 6.09283 6.26787 6.36141 6.47867 6.60215 6.68942 6.79115 6.86987 7.03851 7.84325 7.98272 8.05944 8.48411 9.28035 10.00720 10.21055 11.47536 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.003133 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.548741 B = 8935.487745 C = 9801.818670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.600 5.600 3 C 0.129 3.871 4 C -0.092 4.092 5 C -0.127 4.127 6 C -0.138 4.138 7 C 0.171 3.829 8 N -0.752 5.752 9 C -0.239 4.239 10 H 0.090 0.910 11 C 0.004 3.996 12 N -0.936 5.936 13 Si 0.880 3.120 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.276 1.276 17 C 0.564 3.436 18 O -0.494 6.494 19 C -0.089 4.089 20 C -0.029 4.029 21 C -0.143 4.143 22 C 0.124 3.876 23 N -0.308 5.308 24 N -0.106 5.106 25 N -0.003 5.003 26 N -0.296 5.296 27 C 0.269 3.731 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.167 0.833 44 H 0.175 0.825 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.956 -22.423 16.497 34.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.333 5.333 3 C 0.007 3.993 4 C -0.093 4.093 5 C -0.185 4.185 6 C -0.195 4.195 7 C 0.043 3.957 8 N -0.398 5.398 9 C -0.369 4.369 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.584 5.584 13 Si 0.710 3.290 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.203 1.203 17 C 0.349 3.651 18 O -0.368 6.368 19 C -0.098 4.098 20 C -0.054 4.054 21 C -0.166 4.166 22 C -0.003 4.003 23 N -0.088 5.088 24 N -0.089 5.089 25 N 0.004 4.996 26 N -0.152 5.152 27 C 0.010 3.990 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.185 0.815 44 H 0.192 0.808 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.229 -22.969 15.368 33.107 hybrid contribution -1.150 -0.530 -0.594 1.398 sum -19.379 -23.499 14.774 33.853 Atomic orbital electron populations 1.22235 0.79779 1.04283 1.01852 1.47622 1.06874 1.05814 1.72968 1.21635 0.97799 0.82720 0.97144 1.21201 0.96422 0.97260 0.94452 1.21755 0.99757 0.96389 1.00588 1.21914 0.96065 1.00139 1.01420 1.20545 0.96293 0.90981 0.87856 1.42733 1.69516 1.26064 1.01508 1.19064 1.27595 0.96763 0.93514 0.89219 1.24636 1.00562 0.97147 0.96810 1.69697 1.46314 1.23030 1.19380 0.86616 0.78434 0.80498 0.83450 1.21154 1.21675 1.20264 1.17397 0.87080 0.82447 0.78143 1.90925 1.12537 1.86335 1.46966 1.20273 0.97802 0.94145 0.97578 1.22113 0.90420 0.97355 0.95517 1.21016 1.02931 0.92764 0.99920 1.21789 0.86509 1.02230 0.89812 1.48998 1.20794 1.12739 1.26287 1.82833 1.07144 1.14800 1.04098 1.78071 1.09171 0.97829 1.14540 1.75260 1.18651 1.11937 1.09379 1.23620 0.90546 0.87819 0.96979 0.92022 0.89494 0.91254 0.89790 0.89043 0.93988 0.92688 0.91943 0.92614 0.92191 0.93449 0.95541 0.95330 0.80450 0.93131 0.81532 0.80758 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 7.98 59.84 0.48 0.81 16 2 N -0.60 -5.88 2.40 -182.89 -0.44 -6.32 16 3 C 0.13 1.52 4.61 -4.04 -0.02 1.51 16 4 C -0.09 -1.41 0.60 -154.51 -0.09 -1.51 16 5 C -0.13 -2.28 7.03 37.16 0.26 -2.01 16 6 C -0.14 -1.93 7.05 37.15 0.26 -1.67 16 7 C 0.17 3.30 5.15 -4.04 -0.02 3.28 16 8 N -0.75 -18.20 4.81 -59.91 -0.29 -18.49 16 9 C -0.24 -6.92 10.47 -15.06 -0.16 -7.07 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 11 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 12 N -0.94 -30.05 13.97 55.49 0.78 -29.27 16 13 Si 0.88 22.90 27.74 -169.99 -4.71 18.18 16 14 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 16 H -0.28 -6.91 6.52 56.52 0.37 -6.54 16 17 C 0.56 6.84 5.58 -12.57 -0.07 6.77 16 18 O -0.49 -8.20 15.15 5.25 0.08 -8.12 16 19 C -0.09 -0.83 5.12 -102.71 -0.53 -1.36 16 20 C -0.03 -0.11 7.74 -38.74 -0.30 -0.41 16 21 C -0.14 -0.22 9.92 -40.09 -0.40 -0.62 16 22 C 0.12 0.50 11.15 -16.89 -0.19 0.31 16 23 N -0.31 -3.01 3.94 -10.99 -0.04 -3.05 16 24 N -0.11 -1.35 13.99 60.35 0.84 -0.51 16 25 N 0.00 -0.05 13.36 60.35 0.81 0.76 16 26 N -0.30 -4.77 12.24 32.20 0.39 -4.37 16 27 C 0.27 3.33 7.99 -154.53 -1.23 2.09 16 28 H 0.06 0.15 7.38 -51.93 -0.38 -0.24 16 29 H 0.09 0.49 6.03 -51.93 -0.31 0.18 16 30 H 0.07 0.30 5.81 -51.93 -0.30 0.00 16 31 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.09 1.21 7.37 -51.93 -0.38 0.83 16 33 H 0.04 0.72 6.20 -51.93 -0.32 0.40 16 34 H 0.05 1.10 6.86 -51.93 -0.36 0.74 16 35 H 0.06 1.20 7.82 -51.93 -0.41 0.79 16 36 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.06 1.00 6.86 -51.93 -0.36 0.65 16 38 H 0.05 0.56 5.98 -51.93 -0.31 0.24 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.69 3.22 -40.82 -0.13 8.56 16 42 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 43 H 0.17 0.12 6.36 -52.49 -0.33 -0.21 16 44 H 0.18 -0.49 8.06 -52.49 -0.42 -0.91 16 45 H 0.18 0.07 8.06 -52.49 -0.42 -0.35 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -39.85 359.04 -5.00 -44.85 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.72 Total: 0.79 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.10 Total: 0.14 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 2.05 Total: -61.25 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.71 Total: 18.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.85 -5.00 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717453635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.398 kcal (2) G-P(sol) polarization free energy of solvation -39.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds