Wall clock time and date at job start Tue Mar 31 2020 18:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99568 * 2 1 4 4 C 1.53006 * 109.46800 * 269.99252 * 3 2 1 5 5 C 1.53002 * 109.47271 * 300.00386 * 4 3 2 6 6 C 1.52994 * 109.46890 * 60.00389 * 4 3 2 7 7 C 1.53000 * 109.47094 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.47444 * 180.02562 * 7 4 3 9 9 C 1.36934 * 120.00606 * 179.97438 * 8 7 4 10 10 H 1.08002 * 119.99500 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00160 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99848 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00113 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47283 * 89.99851 * 13 11 9 15 15 H 1.48505 * 109.47132 * 209.99947 * 13 11 9 16 16 H 1.48502 * 109.47235 * 329.99632 * 13 11 9 17 17 C 1.34771 * 120.00503 * 179.97438 * 2 1 3 18 18 O 1.21626 * 120.00513 * 184.16315 * 17 2 1 19 19 C 1.47311 * 119.99704 * 4.16686 * 17 2 1 20 20 C 1.39006 * 120.90454 * 312.92670 * 19 17 2 21 21 C 1.39720 * 119.29165 * 180.23038 * 20 19 17 22 22 C 1.35259 * 121.07908 * 359.49895 * 21 20 19 23 23 N 1.35719 * 121.57262 * 0.49567 * 22 21 20 24 24 N 1.40207 * 134.08990 * 179.75049 * 23 22 21 25 25 N 1.29014 * 106.96229 * 180.02562 * 24 23 22 26 26 N 1.28591 * 110.78318 * 359.97438 * 25 24 23 27 27 C 1.32036 * 110.21880 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47947 * 270.49037 * 1 2 3 29 29 H 1.09002 * 109.47481 * 30.49666 * 1 2 3 30 30 H 1.09002 * 109.46641 * 150.48824 * 1 2 3 31 31 H 1.08991 * 109.47912 * 29.99279 * 3 2 1 32 32 H 1.09001 * 109.47081 * 149.99676 * 3 2 1 33 33 H 1.08998 * 109.46988 * 59.99763 * 5 4 3 34 34 H 1.08996 * 109.46889 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46671 * 299.99711 * 5 4 3 36 36 H 1.09001 * 109.47633 * 60.00181 * 6 4 3 37 37 H 1.09005 * 109.47176 * 179.97438 * 6 4 3 38 38 H 1.08997 * 109.47407 * 299.99624 * 6 4 3 39 39 H 1.09004 * 109.46975 * 300.00127 * 7 4 3 40 40 H 1.08997 * 109.47513 * 59.99882 * 7 4 3 41 41 H 0.97008 * 119.99481 * 359.97438 * 8 7 4 42 42 H 0.97002 * 120.00282 * 179.97438 * 12 11 9 43 43 H 1.08000 * 120.35504 * 359.95181 * 20 19 17 44 44 H 1.07998 * 119.46190 * 179.74317 * 21 20 19 45 45 H 1.08001 * 119.21603 * 180.26067 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8932 -2.1639 7 6 3.2179 3.0351 -1.4427 8 7 3.4617 3.4582 -2.8238 9 6 4.1347 4.6242 -3.0742 10 1 4.4854 5.2321 -2.2533 11 6 4.3660 5.0248 -4.3829 12 7 5.0125 6.1458 -4.6235 13 14 3.7587 3.9737 -5.8027 14 1 2.3856 4.3954 -6.1788 15 1 4.6650 4.1429 -6.9669 16 1 3.7431 2.5469 -5.3910 17 6 2.1389 -1.1671 0.0005 18 8 3.3528 -1.1685 0.0770 19 6 1.4053 -2.4412 -0.0916 20 6 0.2923 -2.6834 0.7051 21 6 -0.3754 -3.9057 0.5935 22 6 0.0380 -4.8497 -0.2827 23 7 1.1193 -4.6548 -1.0795 24 7 1.7672 -5.4302 -2.0514 25 7 2.7578 -4.7308 -2.4920 26 7 2.8085 -3.5893 -1.9021 27 6 1.8278 -3.4855 -1.0241 28 1 -0.3635 0.0088 1.0276 29 1 -0.3634 0.8855 -0.5215 30 1 -0.3633 -0.8944 -0.5063 31 1 1.6083 2.0285 0.5137 32 1 3.1498 1.1385 0.5139 33 1 2.7344 -0.3000 -2.1636 34 1 3.4607 0.9584 -3.1915 35 1 4.2318 0.5138 -1.6498 36 1 0.5265 2.6529 -1.6502 37 1 1.2973 2.2082 -3.1915 38 1 0.5707 0.9492 -2.1639 39 1 2.6291 3.7950 -0.9288 40 1 4.1703 2.9045 -0.9289 41 1 3.1463 2.9123 -3.5611 42 1 5.1745 6.4256 -5.5380 43 1 -0.0501 -1.9366 1.4061 44 1 -1.2379 -4.0984 1.2141 45 1 -0.5030 -5.7822 -0.3470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717453635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:20 Heat of formation + Delta-G solvation = 116.557539 kcal Electronic energy + Delta-G solvation = -29146.891986 eV Core-core repulsion = 25202.815457 eV Total energy + Delta-G solvation = -3944.076528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -44.51883 -41.49495 -39.62564 -38.73280 -36.58302 -35.39137 -34.61930 -33.16932 -32.77258 -31.63988 -28.93197 -28.29298 -27.56939 -27.31745 -25.87322 -25.33473 -24.56422 -23.69390 -21.15924 -20.33861 -19.85664 -19.33411 -18.70475 -18.20197 -17.94477 -17.16962 -16.95973 -16.76897 -16.44051 -15.82305 -15.57717 -15.10660 -14.87169 -14.84608 -14.53995 -14.25996 -14.20367 -14.01910 -13.89380 -13.76069 -13.66921 -13.40427 -13.25820 -13.04865 -12.87949 -12.66292 -12.49813 -12.47773 -12.28212 -12.20966 -12.11602 -11.75515 -11.69570 -11.55250 -11.26983 -11.01406 -10.98906 -9.76484 -9.60069 -9.28376 -8.04936 -5.35974 -0.98101 -0.59417 0.55758 0.93571 1.31353 1.35158 1.41243 1.43211 1.78919 2.15044 2.44210 2.48034 2.81074 3.26519 3.31604 3.61163 3.62000 3.69414 3.86922 3.90418 3.99089 4.03412 4.18540 4.29172 4.34658 4.43427 4.53485 4.59397 4.67652 4.75876 4.77524 4.81744 4.88491 4.92518 4.97371 5.02266 5.11354 5.13768 5.15032 5.35814 5.37328 5.48309 5.51304 5.75042 6.20309 6.30203 7.05655 7.06931 7.13665 7.84652 8.02442 9.17058 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.003133 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.548741 B = 8935.487745 C = 9801.818670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.594 5.594 3 C 0.136 3.864 4 C -0.082 4.082 5 C -0.115 4.115 6 C -0.133 4.133 7 C 0.166 3.834 8 N -0.755 5.755 9 C -0.227 4.227 10 H 0.061 0.939 11 C -0.061 4.061 12 N -0.983 5.983 13 Si 0.945 3.055 14 H -0.270 1.270 15 H -0.295 1.295 16 H -0.267 1.267 17 C 0.560 3.440 18 O -0.558 6.558 19 C -0.131 4.131 20 C 0.016 3.984 21 C -0.107 4.107 22 C 0.110 3.890 23 N -0.303 5.303 24 N -0.124 5.124 25 N -0.041 5.041 26 N -0.359 5.359 27 C 0.248 3.752 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.013 0.987 41 H 0.364 0.636 42 H 0.258 0.742 43 H 0.212 0.788 44 H 0.241 0.759 45 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.823 -24.188 19.449 40.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.325 5.325 3 C 0.013 3.987 4 C -0.084 4.084 5 C -0.173 4.173 6 C -0.190 4.190 7 C 0.040 3.960 8 N -0.401 5.401 9 C -0.359 4.359 10 H 0.079 0.921 11 C -0.253 4.253 12 N -0.634 5.634 13 Si 0.773 3.227 14 H -0.195 1.195 15 H -0.222 1.222 16 H -0.192 1.192 17 C 0.347 3.653 18 O -0.436 6.436 19 C -0.141 4.141 20 C -0.008 4.008 21 C -0.130 4.130 22 C -0.016 4.016 23 N -0.083 5.083 24 N -0.107 5.107 25 N -0.033 5.033 26 N -0.218 5.218 27 C -0.008 4.008 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.139 0.861 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.198 0.802 42 H 0.067 0.933 43 H 0.229 0.771 44 H 0.257 0.743 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -24.183 -24.769 18.361 39.184 hybrid contribution 0.482 -0.003 -1.228 1.320 sum -23.700 -24.771 17.133 38.326 Atomic orbital electron populations 1.22666 0.76402 1.05184 1.05083 1.47665 1.08790 1.04223 1.71805 1.21429 0.98307 0.84769 0.94175 1.21111 0.96240 0.93875 0.97145 1.21615 0.99273 0.97574 0.98793 1.21893 0.95331 1.02259 0.99527 1.20742 0.96496 0.93625 0.85157 1.42784 1.68905 1.24657 1.03777 1.19083 1.26544 0.97508 0.92719 0.92082 1.25383 1.01623 0.98637 0.99615 1.69861 1.48498 1.25180 1.19848 0.85562 0.78293 0.79179 0.79682 1.19522 1.22169 1.19230 1.17886 0.86574 0.83882 0.76927 1.90892 1.15480 1.87383 1.49880 1.20144 1.00810 0.92755 1.00351 1.22833 0.86836 0.98759 0.92419 1.21870 1.02953 0.90178 0.97971 1.23004 0.84818 1.04845 0.88898 1.49097 1.21603 1.11462 1.26127 1.82594 1.07272 1.15384 1.05451 1.77971 1.10798 0.98438 1.16126 1.75049 1.21772 1.12964 1.11968 1.23854 0.90381 0.89332 0.97236 0.87469 0.89213 0.89857 0.86087 0.91235 0.93577 0.95476 0.94526 0.90164 0.95163 0.90855 0.93823 0.96881 0.80230 0.93346 0.77127 0.74287 0.75959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.22 7.98 127.77 1.02 1.24 16 2 N -0.59 -9.86 2.40 -850.80 -2.04 -11.90 16 3 C 0.14 2.97 4.61 86.38 0.40 3.36 16 4 C -0.08 -2.47 0.60 -52.18 -0.03 -2.51 16 5 C -0.11 -4.31 7.03 71.98 0.51 -3.80 16 6 C -0.13 -3.39 7.05 71.98 0.51 -2.88 16 7 C 0.17 6.46 5.15 86.38 0.44 6.90 16 8 N -0.76 -37.09 4.81 -343.46 -1.65 -38.75 16 9 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 10 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 11 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 12 N -0.98 -65.02 13.97 21.65 0.30 -64.72 16 13 Si 0.94 48.35 27.74 68.60 1.90 50.25 16 14 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.29 -15.24 7.11 99.48 0.71 -14.54 16 16 H -0.27 -13.05 6.52 99.48 0.65 -12.41 16 17 C 0.56 13.06 5.58 86.63 0.48 13.54 16 18 O -0.56 -19.58 15.15 -4.11 -0.06 -19.65 16 19 C -0.13 -2.15 5.12 -18.63 -0.10 -2.24 16 20 C 0.02 0.02 7.74 22.81 0.18 0.20 16 21 C -0.11 0.50 9.92 21.94 0.22 0.72 16 22 C 0.11 0.33 11.15 83.40 0.93 1.26 16 23 N -0.30 -5.50 3.94 -188.68 -0.74 -6.25 16 24 N -0.12 -3.27 13.99 37.02 0.52 -2.76 16 25 N -0.04 -1.37 13.36 37.02 0.49 -0.88 16 26 N -0.36 -12.56 12.24 -52.05 -0.64 -13.20 16 27 C 0.25 6.16 7.99 135.76 1.08 7.24 16 28 H 0.11 -0.39 7.38 -2.39 -0.02 -0.41 16 29 H 0.09 0.46 6.03 -2.39 -0.01 0.44 16 30 H 0.08 0.19 5.81 -2.39 -0.01 0.18 16 31 H 0.12 1.76 8.07 -2.39 -0.02 1.74 16 32 H 0.07 1.86 7.37 -2.39 -0.02 1.84 16 33 H 0.05 1.67 6.20 -2.39 -0.01 1.65 16 34 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 35 H 0.04 1.52 7.82 -2.39 -0.02 1.50 16 36 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 37 H 0.03 0.95 6.86 -2.38 -0.02 0.94 16 38 H 0.07 1.48 5.98 -2.39 -0.01 1.47 16 39 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.36 17.60 3.22 -92.70 -0.30 17.30 16 42 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 43 H 0.21 -1.59 6.36 -2.91 -0.02 -1.61 16 44 H 0.24 -4.00 8.06 -2.91 -0.02 -4.03 16 45 H 0.22 -1.18 8.06 -2.91 -0.02 -1.21 16 Total: -1.00 -101.77 359.04 5.75 -96.02 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 0.68 Total: 4.71 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 6.99 Total: 7.12 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -3.76 Total: -138.45 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.06 Total: -19.65 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.90 Total: 50.25 kcal Total: -101.77 5.75 -96.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717453635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.574 kcal (2) G-P(sol) polarization free energy of solvation -101.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds