Wall clock time and date at job start Tue Mar 31 2020 17:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40174 * 119.82207 * 2 1 4 4 C 1.35678 * 119.27282 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.48438 * 180.02562 * 4 3 2 6 6 N 1.36166 * 119.03111 * 0.02562 * 4 3 2 7 7 N 1.40108 * 133.23049 * 179.97438 * 6 4 3 8 8 C 1.31989 * 106.92469 * 180.02562 * 7 6 4 9 9 C 1.48129 * 125.32188 * 180.02562 * 8 7 6 10 10 O 1.21512 * 120.00170 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99664 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99654 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46712 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47111 * 295.00078 * 13 12 11 15 15 C 1.53000 * 109.46627 * 175.00205 * 13 12 11 16 16 N 1.46490 * 109.46947 * 55.00566 * 13 12 11 17 17 C 1.46507 * 120.00458 * 59.99460 * 16 13 12 18 18 C 1.36937 * 120.00132 * 239.99677 * 16 13 12 19 19 H 1.08005 * 119.99633 * 23.09304 * 18 16 13 20 20 C 1.38810 * 120.00216 * 203.10189 * 18 16 13 21 21 N 1.31612 * 120.00326 * 12.99089 * 20 18 16 22 22 Si 1.86803 * 119.99921 * 192.98835 * 20 18 16 23 23 H 1.48496 * 109.47016 * 60.00147 * 22 20 18 24 24 H 1.48501 * 109.47256 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47507 * 300.00170 * 22 20 18 26 26 N 1.33472 * 109.35289 * 0.02562 * 8 7 6 27 27 C 1.32498 * 109.75433 * 0.02562 * 26 8 7 28 28 N 1.31254 * 119.82377 * 179.72344 * 2 1 3 29 29 H 1.08996 * 109.47355 * 90.00031 * 1 2 3 30 30 H 1.09006 * 109.47062 * 210.00051 * 1 2 3 31 31 H 1.09004 * 109.47594 * 329.99825 * 1 2 3 32 32 H 1.07999 * 120.35918 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46823 * 90.00046 * 5 4 3 34 34 H 1.08997 * 109.47283 * 210.00119 * 5 4 3 35 35 H 1.09001 * 109.47422 * 330.00330 * 5 4 3 36 36 H 0.96997 * 120.00038 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47189 * 300.00329 * 12 11 9 38 38 H 1.09000 * 109.46593 * 60.00178 * 12 11 9 39 39 H 1.09002 * 109.46943 * 180.02562 * 15 13 12 40 40 H 1.08999 * 109.47522 * 300.00454 * 15 13 12 41 41 H 1.09001 * 109.47601 * 60.00144 * 15 13 12 42 42 H 1.09010 * 109.46765 * 95.12473 * 17 16 13 43 43 H 1.09000 * 109.47453 * 215.12309 * 17 16 13 44 44 H 1.09002 * 109.46815 * 335.12994 * 17 16 13 45 45 H 0.97004 * 120.00324 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5608 1.2031 0.0005 5 6 4.3377 2.4944 0.0011 6 7 4.2101 0.0062 0.0005 7 7 5.5650 -0.3504 0.0005 8 6 5.6151 -1.6694 -0.0001 9 6 6.8554 -2.4793 0.0003 10 8 7.9395 -1.9304 0.0016 11 7 6.7814 -3.8251 -0.0009 12 6 8.0080 -4.6261 -0.0012 13 6 7.6462 -6.1128 -0.0019 14 1 7.1382 -6.3635 0.9292 15 6 8.9219 -6.9479 -0.1279 16 7 6.7612 -6.3993 -1.1336 17 6 7.2169 -6.1452 -2.5026 18 6 5.5080 -6.9047 -0.9120 19 1 5.0251 -6.7520 0.0420 20 6 4.8583 -7.6133 -1.9132 21 7 5.5269 -8.0211 -2.9710 22 14 3.0347 -7.9883 -1.7594 23 1 2.2738 -6.7164 -1.6685 24 1 2.5840 -8.7513 -2.9510 25 1 2.7968 -8.7959 -0.5361 26 7 4.3735 -2.1592 -0.0010 27 6 3.4993 -1.1635 -0.0016 28 7 2.1597 -1.1387 0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6670 2.1531 -0.0004 33 1 4.5246 2.8055 1.0290 34 1 5.2878 2.3471 -0.5124 35 1 3.7626 3.2647 -0.5127 36 1 5.9160 -4.2632 -0.0024 37 1 8.5935 -4.3938 -0.8907 38 1 8.5927 -4.3953 0.8892 39 1 8.6642 -8.0070 -0.1289 40 1 9.4300 -6.6971 -1.0590 41 1 9.5805 -6.7347 0.7141 42 1 7.6238 -7.0634 -2.9264 43 1 6.3763 -5.8068 -3.1085 44 1 7.9896 -5.3765 -2.4915 45 1 5.0728 -8.5160 -3.6708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725197700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:05 Heat of formation + Delta-G solvation = 124.970392 kcal Electronic energy + Delta-G solvation = -28460.478041 eV Core-core repulsion = 24516.766321 eV Total energy + Delta-G solvation = -3943.711719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.10033 -39.78104 -38.72838 -36.68065 -35.70206 -33.84867 -32.70484 -32.02342 -31.50097 -29.41947 -29.25606 -28.27830 -26.59300 -25.94686 -24.26385 -23.20244 -22.88708 -21.87459 -20.10269 -19.36345 -18.63745 -18.20628 -17.03859 -16.99200 -16.78685 -15.53996 -15.33160 -15.30771 -14.72354 -14.56446 -14.19271 -14.04239 -13.87028 -13.75223 -13.55792 -13.02955 -12.84324 -12.73153 -12.71496 -12.61045 -12.32130 -12.13463 -11.97711 -11.70078 -11.38234 -11.03856 -10.75382 -10.65821 -10.39521 -10.35819 -10.25616 -10.23813 -10.02107 -9.83031 -9.82326 -9.71973 -8.96272 -8.62760 -8.48474 -6.72904 -5.66503 -3.14142 0.07787 0.38298 1.52278 1.76598 2.85447 2.97884 3.19633 3.46121 3.50589 3.51286 3.55173 3.66034 3.95507 4.26444 4.54433 4.57008 4.72346 4.78748 4.81619 4.89665 5.10829 5.15196 5.23765 5.42624 5.47410 5.48511 5.60772 5.68502 5.80916 5.87207 5.93417 5.99599 6.10121 6.22269 6.29958 6.46993 6.73577 6.83829 6.88937 7.02915 7.19805 7.44254 7.56942 7.79448 7.86410 7.96384 8.40967 8.45836 9.28381 9.91115 10.39684 11.37726 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.003724 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.472331 B = 7516.812498 C = 9599.919000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.232 3.768 3 C -0.226 4.226 4 C 0.204 3.796 5 C -0.122 4.122 6 N -0.332 5.332 7 N -0.274 5.274 8 C 0.248 3.752 9 C 0.602 3.398 10 O -0.525 6.525 11 N -0.673 5.673 12 C 0.104 3.896 13 C 0.157 3.843 14 H 0.071 0.929 15 C -0.155 4.155 16 N -0.593 5.593 17 C 0.164 3.836 18 C -0.259 4.259 19 H 0.069 0.931 20 C 0.008 3.992 21 N -0.905 5.905 22 Si 0.901 3.099 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.283 1.283 26 N -0.488 5.488 27 C 0.451 3.549 28 N -0.454 5.454 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.424 0.576 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.031 0.969 43 H 0.039 0.961 44 H -0.002 1.002 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 21.528 6.814 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.066 3.934 3 C -0.251 4.251 4 C 0.087 3.913 5 C -0.179 4.179 6 N -0.114 5.114 7 N -0.108 5.108 8 C -0.036 4.036 9 C 0.381 3.619 10 O -0.400 6.400 11 N -0.325 5.325 12 C -0.021 4.021 13 C 0.048 3.952 14 H 0.089 0.911 15 C -0.215 4.215 16 N -0.316 5.316 17 C 0.020 3.980 18 C -0.388 4.388 19 H 0.087 0.913 20 C -0.191 4.191 21 N -0.550 5.550 22 Si 0.731 3.269 23 H -0.207 1.207 24 H -0.218 1.218 25 H -0.210 1.210 26 N -0.222 5.222 27 C 0.090 3.910 28 N -0.170 5.170 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.191 0.809 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.017 0.983 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.276 20.814 6.650 22.734 hybrid contribution -1.277 0.302 -0.172 1.324 sum -7.553 21.116 6.477 23.343 Atomic orbital electron populations 1.20893 0.86135 1.04937 1.04606 1.22071 0.98170 0.86770 0.86399 1.21624 0.91342 1.01403 1.10728 1.20885 0.92060 0.86520 0.91865 1.21075 1.01193 0.90673 1.04989 1.49088 1.07552 1.07954 1.46852 1.78841 0.88834 1.13383 1.29744 1.24376 0.93324 0.89471 0.96399 1.16342 0.84248 0.82476 0.78801 1.90799 1.26716 1.71837 1.50637 1.45725 1.12732 1.03878 1.70136 1.22172 0.85320 0.93230 1.01379 1.20624 0.91892 0.89551 0.93117 0.91069 1.22178 0.97679 1.01301 1.00334 1.43976 1.13001 1.74235 1.00388 1.20737 0.95961 0.96134 0.85203 1.19155 0.90844 1.28459 1.00387 0.91324 1.24984 0.98371 0.97813 0.97951 1.70061 1.34330 1.40127 1.10443 0.86390 0.85622 0.78106 0.76820 1.20703 1.21830 1.20968 1.70985 0.97630 1.26538 1.27031 1.22684 0.90146 0.81559 0.96580 1.67903 1.01719 1.28851 1.18538 0.88629 0.89035 0.89242 0.80920 0.88505 0.88977 0.88385 0.73738 0.91447 0.91747 0.92054 0.93112 0.93911 0.95085 0.94248 0.98346 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.19 36.00 0.37 -0.16 16 2 C 0.23 2.14 6.83 -82.12 -0.56 1.58 16 3 C -0.23 -1.54 9.39 -39.77 -0.37 -1.91 16 4 C 0.20 1.97 6.86 -81.58 -0.56 1.41 16 5 C -0.12 -0.72 10.13 36.01 0.36 -0.36 16 6 N -0.33 -4.97 3.91 -10.07 -0.04 -5.01 16 7 N -0.27 -4.88 12.67 32.02 0.41 -4.47 16 8 C 0.25 4.82 7.92 -156.78 -1.24 3.58 16 9 C 0.60 12.08 7.84 -12.20 -0.10 11.99 16 10 O -0.53 -11.32 17.07 5.36 0.09 -11.23 16 11 N -0.67 -13.23 5.39 -61.16 -0.33 -13.56 16 12 C 0.10 1.93 4.93 -4.04 -0.02 1.91 16 13 C 0.16 3.13 2.87 -67.93 -0.19 2.93 16 14 H 0.07 1.40 7.86 -51.93 -0.41 1.00 16 15 C -0.16 -2.78 9.19 37.16 0.34 -2.44 16 16 N -0.59 -14.43 2.28 -173.48 -0.40 -14.82 16 17 C 0.16 4.08 8.01 59.85 0.48 4.56 16 18 C -0.26 -6.98 9.31 -15.06 -0.14 -7.12 16 19 H 0.07 1.80 7.82 -52.48 -0.41 1.39 16 20 C 0.01 0.21 5.10 -17.43 -0.09 0.12 16 21 N -0.91 -26.48 10.71 55.49 0.59 -25.88 16 22 Si 0.90 22.27 29.57 -169.99 -5.03 17.24 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 N -0.49 -9.68 10.89 -12.23 -0.13 -9.82 16 27 C 0.45 7.76 8.99 -323.04 -2.90 4.86 16 28 N -0.45 -6.66 10.40 -10.01 -0.10 -6.77 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.16 8.09 -51.93 -0.42 -0.26 16 32 H 0.17 0.33 8.06 -52.49 -0.42 -0.09 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.25 8.09 -51.93 -0.42 -0.17 16 36 H 0.42 8.88 7.56 -40.82 -0.31 8.57 16 37 H 0.07 1.30 6.87 -51.93 -0.36 0.94 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.83 7.34 -51.92 -0.38 0.45 16 43 H 0.04 1.07 7.35 -51.93 -0.38 0.69 16 44 H 0.00 -0.04 6.54 -51.93 -0.34 -0.38 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -35.89 380.30 -10.17 -46.06 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.34 Total: 1.57 kcal Atomic # 6 Polarization: 25.57 SS G_CDS: -4.62 Total: 20.95 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: 0.00 Total: -80.33 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.89 -10.17 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725197700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.034 kcal (2) G-P(sol) polarization free energy of solvation -35.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds