Wall clock time and date at job start Tue Mar 31 2020 17:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40174 * 119.82207 * 2 1 4 4 C 1.35678 * 119.27282 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.48438 * 180.02562 * 4 3 2 6 6 N 1.36166 * 119.03111 * 0.02562 * 4 3 2 7 7 N 1.40108 * 133.23049 * 179.97438 * 6 4 3 8 8 C 1.31989 * 106.92469 * 180.02562 * 7 6 4 9 9 C 1.48129 * 125.32188 * 180.02562 * 8 7 6 10 10 O 1.21512 * 120.00170 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99664 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99654 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46712 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47111 * 295.00078 * 13 12 11 15 15 C 1.53000 * 109.46627 * 175.00205 * 13 12 11 16 16 N 1.46490 * 109.46947 * 55.00566 * 13 12 11 17 17 C 1.46507 * 120.00458 * 59.99460 * 16 13 12 18 18 C 1.36937 * 120.00132 * 239.99677 * 16 13 12 19 19 H 1.08005 * 119.99633 * 23.09304 * 18 16 13 20 20 C 1.38810 * 120.00216 * 203.10189 * 18 16 13 21 21 N 1.31612 * 120.00326 * 12.99089 * 20 18 16 22 22 Si 1.86803 * 119.99921 * 192.98835 * 20 18 16 23 23 H 1.48496 * 109.47016 * 60.00147 * 22 20 18 24 24 H 1.48501 * 109.47256 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47507 * 300.00170 * 22 20 18 26 26 N 1.33472 * 109.35289 * 0.02562 * 8 7 6 27 27 C 1.32498 * 109.75433 * 0.02562 * 26 8 7 28 28 N 1.31254 * 119.82377 * 179.72344 * 2 1 3 29 29 H 1.08996 * 109.47355 * 90.00031 * 1 2 3 30 30 H 1.09006 * 109.47062 * 210.00051 * 1 2 3 31 31 H 1.09004 * 109.47594 * 329.99825 * 1 2 3 32 32 H 1.07999 * 120.35918 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46823 * 90.00046 * 5 4 3 34 34 H 1.08997 * 109.47283 * 210.00119 * 5 4 3 35 35 H 1.09001 * 109.47422 * 330.00330 * 5 4 3 36 36 H 0.96997 * 120.00038 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47189 * 300.00329 * 12 11 9 38 38 H 1.09000 * 109.46593 * 60.00178 * 12 11 9 39 39 H 1.09002 * 109.46943 * 180.02562 * 15 13 12 40 40 H 1.08999 * 109.47522 * 300.00454 * 15 13 12 41 41 H 1.09001 * 109.47601 * 60.00144 * 15 13 12 42 42 H 1.09010 * 109.46765 * 95.12473 * 17 16 13 43 43 H 1.09000 * 109.47453 * 215.12309 * 17 16 13 44 44 H 1.09002 * 109.46815 * 335.12994 * 17 16 13 45 45 H 0.97004 * 120.00324 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5608 1.2031 0.0005 5 6 4.3377 2.4944 0.0011 6 7 4.2101 0.0062 0.0005 7 7 5.5650 -0.3504 0.0005 8 6 5.6151 -1.6694 -0.0001 9 6 6.8554 -2.4793 0.0003 10 8 7.9395 -1.9304 0.0016 11 7 6.7814 -3.8251 -0.0009 12 6 8.0080 -4.6261 -0.0012 13 6 7.6462 -6.1128 -0.0019 14 1 7.1382 -6.3635 0.9292 15 6 8.9219 -6.9479 -0.1279 16 7 6.7612 -6.3993 -1.1336 17 6 7.2169 -6.1452 -2.5026 18 6 5.5080 -6.9047 -0.9120 19 1 5.0251 -6.7520 0.0420 20 6 4.8583 -7.6133 -1.9132 21 7 5.5269 -8.0211 -2.9710 22 14 3.0347 -7.9883 -1.7594 23 1 2.2738 -6.7164 -1.6685 24 1 2.5840 -8.7513 -2.9510 25 1 2.7968 -8.7959 -0.5361 26 7 4.3735 -2.1592 -0.0010 27 6 3.4993 -1.1635 -0.0016 28 7 2.1597 -1.1387 0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6670 2.1531 -0.0004 33 1 4.5246 2.8055 1.0290 34 1 5.2878 2.3471 -0.5124 35 1 3.7626 3.2647 -0.5127 36 1 5.9160 -4.2632 -0.0024 37 1 8.5935 -4.3938 -0.8907 38 1 8.5927 -4.3953 0.8892 39 1 8.6642 -8.0070 -0.1289 40 1 9.4300 -6.6971 -1.0590 41 1 9.5805 -6.7347 0.7141 42 1 7.6238 -7.0634 -2.9264 43 1 6.3763 -5.8068 -3.1085 44 1 7.9896 -5.3765 -2.4915 45 1 5.0728 -8.5160 -3.6708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725197700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:04 Heat of formation + Delta-G solvation = 101.427830 kcal Electronic energy + Delta-G solvation = -28461.498923 eV Core-core repulsion = 24516.766321 eV Total energy + Delta-G solvation = -3944.732602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.19089 -41.09266 -39.93200 -38.43880 -36.57705 -35.58897 -33.93273 -33.47404 -32.60940 -31.19498 -30.24431 -28.87676 -28.02630 -27.91984 -25.59448 -24.82774 -24.16012 -22.78407 -21.52865 -21.01095 -19.66912 -19.29034 -18.88458 -18.27465 -18.10034 -17.19982 -17.02509 -16.34705 -16.05125 -15.77163 -15.45173 -15.26961 -14.88543 -14.67548 -14.55471 -14.51942 -14.21544 -13.97020 -13.84967 -13.60553 -13.44137 -13.07524 -13.05701 -12.89940 -12.88470 -12.68934 -12.64306 -12.55318 -12.33080 -12.12865 -11.80399 -11.72430 -11.56272 -11.52244 -11.12332 -10.80376 -10.61425 -10.17652 -9.98801 -8.77725 -7.79310 -5.27302 -0.80056 -0.59525 0.51862 0.53890 1.46137 1.50210 1.55906 1.64165 1.87095 2.10093 2.22520 2.52517 2.84044 3.10247 3.21252 3.35722 3.63156 3.71414 3.97409 4.00484 4.17415 4.26515 4.33104 4.44232 4.52287 4.56049 4.63386 4.68875 4.74767 4.77554 4.81083 4.85491 4.89285 5.04630 5.07528 5.16394 5.22342 5.23521 5.31192 5.38888 5.49962 5.68691 5.73344 6.12585 6.31705 6.35499 6.57709 6.86130 7.18122 7.88751 8.32903 9.23542 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.003724 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.472331 B = 7516.812498 C = 9599.919000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.234 3.766 3 C -0.189 4.189 4 C 0.174 3.826 5 C -0.117 4.117 6 N -0.333 5.333 7 N -0.290 5.290 8 C 0.227 3.773 9 C 0.605 3.395 10 O -0.546 6.546 11 N -0.675 5.675 12 C 0.111 3.889 13 C 0.155 3.845 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.604 5.604 17 C 0.184 3.816 18 C -0.257 4.257 19 H 0.073 0.927 20 C -0.047 4.047 21 N -0.936 5.936 22 Si 0.958 3.042 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.273 1.273 26 N -0.535 5.535 27 C 0.434 3.566 28 N -0.500 5.500 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.239 0.761 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.143 0.857 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.008 0.992 43 H 0.006 0.994 44 H 0.022 0.978 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 24.811 8.107 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 C -0.213 4.213 4 C 0.059 3.941 5 C -0.174 4.174 6 N -0.115 5.115 7 N -0.125 5.125 8 C -0.057 4.057 9 C 0.386 3.614 10 O -0.423 6.423 11 N -0.325 5.325 12 C -0.013 4.013 13 C 0.048 3.952 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.327 5.327 17 C 0.039 3.961 18 C -0.387 4.387 19 H 0.091 0.909 20 C -0.242 4.242 21 N -0.582 5.582 22 Si 0.787 3.213 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.198 1.198 26 N -0.271 5.271 27 C 0.074 3.926 28 N -0.220 5.220 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.153 0.847 32 H 0.255 0.745 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.040 0.960 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.365 24.154 7.981 26.778 hybrid contribution -0.843 -0.466 -0.510 1.090 sum -9.208 23.688 7.471 26.490 Atomic orbital electron populations 1.21162 0.82664 1.06600 1.05991 1.23108 1.00209 0.86392 0.83089 1.22403 0.90008 1.02867 1.05981 1.21976 0.93537 0.86108 0.92442 1.21241 1.00323 0.89688 1.06132 1.49141 1.06250 1.09315 1.46786 1.78633 0.91093 1.12602 1.30179 1.24057 0.93099 0.90029 0.98508 1.16429 0.84467 0.82464 0.78078 1.90760 1.27552 1.72185 1.51793 1.45759 1.12632 1.03998 1.70093 1.22128 0.85068 0.91827 1.02289 1.20824 0.92188 0.90699 0.91493 0.90721 1.22043 0.97000 0.99555 1.01878 1.44105 1.13294 1.74054 1.01237 1.20388 0.94970 0.95469 0.85253 1.19469 0.92033 1.26947 1.00215 0.90931 1.25643 1.01753 0.98682 0.98121 1.70210 1.35374 1.41523 1.11135 0.85471 0.81523 0.77464 0.76804 1.21308 1.22230 1.19842 1.70791 0.98225 1.28818 1.29235 1.22782 0.91013 0.81866 0.96958 1.68023 1.00485 1.31878 1.21584 0.86989 0.90238 0.84697 0.74506 0.87115 0.91420 0.83883 0.74563 0.92064 0.89180 0.93803 0.93429 0.90037 0.97367 0.97550 0.95989 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.19 71.23 0.73 0.14 16 2 C 0.23 3.61 6.83 43.11 0.29 3.90 16 3 C -0.19 -1.67 9.39 22.15 0.21 -1.47 16 4 C 0.17 2.91 6.86 41.29 0.28 3.19 16 5 C -0.12 -1.00 10.13 71.24 0.72 -0.28 16 6 N -0.33 -9.98 3.91 -185.76 -0.73 -10.71 16 7 N -0.29 -10.71 12.67 -52.60 -0.67 -11.37 16 8 C 0.23 9.30 7.92 137.39 1.09 10.39 16 9 C 0.61 25.28 7.84 86.87 0.68 25.96 16 10 O -0.55 -24.18 17.07 -3.75 -0.06 -24.24 16 11 N -0.67 -27.29 5.39 -465.69 -2.51 -29.79 16 12 C 0.11 4.08 4.93 86.38 0.43 4.51 16 13 C 0.16 6.13 2.87 44.99 0.13 6.26 16 14 H 0.07 2.90 7.86 -2.39 -0.02 2.88 16 15 C -0.15 -5.04 9.19 71.98 0.66 -4.38 16 16 N -0.60 -29.93 2.28 -702.77 -1.60 -31.54 16 17 C 0.18 9.46 8.01 127.77 1.02 10.48 16 18 C -0.26 -14.09 9.31 84.03 0.78 -13.30 16 19 H 0.07 3.87 7.82 -2.91 -0.02 3.84 16 20 C -0.05 -2.67 5.10 84.86 0.43 -2.24 16 21 N -0.94 -56.56 10.71 21.65 0.23 -56.32 16 22 Si 0.96 46.99 29.57 68.60 2.03 49.02 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 26 N -0.53 -22.44 10.89 -192.61 -2.10 -24.54 16 27 C 0.43 15.37 8.99 261.57 2.35 17.72 16 28 N -0.50 -14.56 10.40 -185.60 -1.93 -16.49 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.13 -0.43 8.09 -2.38 -0.02 -0.45 16 32 H 0.24 -1.05 8.06 -2.91 -0.02 -1.07 16 33 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.14 -0.08 8.09 -2.39 -0.02 -0.10 16 36 H 0.42 18.21 7.56 -92.71 -0.70 17.51 16 37 H 0.06 2.33 6.87 -2.39 -0.02 2.32 16 38 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.67 7.67 -2.39 -0.02 1.65 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.01 0.45 7.34 -2.38 -0.02 0.43 16 43 H 0.01 0.33 7.35 -2.39 -0.02 0.31 16 44 H 0.02 1.00 6.54 -2.39 -0.02 0.98 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -85.85 380.30 2.80 -83.05 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.32 Total: 12.06 kcal Atomic # 6 Polarization: 51.08 SS G_CDS: 9.81 Total: 60.88 kcal Atomic # 7 Polarization: -171.47 SS G_CDS: -9.30 Total: -180.77 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -85.85 2.80 -83.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725197700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.480 kcal (2) G-P(sol) polarization free energy of solvation -85.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds