Wall clock time and date at job start Tue Mar 31 2020 18:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47368 * 120.00773 * 2 1 3 5 5 H 1.09008 * 109.46970 * 299.99579 * 4 2 1 6 6 C 1.53001 * 109.47203 * 59.99220 * 4 2 1 7 7 C 1.53000 * 109.46886 * 184.99990 * 6 4 2 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 4 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21517 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.48125 * 120.00028 * 180.02562 * 9 8 7 12 12 C 1.39819 * 119.37218 * 179.72661 * 11 9 8 13 13 C 1.36975 * 119.60343 * 179.73291 * 12 11 9 14 14 C 1.39810 * 118.25067 * 0.56060 * 13 12 11 15 15 N 1.34651 * 135.00297 * 179.72748 * 14 13 12 16 16 N 1.28671 * 109.16062 * 179.97438 * 15 14 13 17 17 N 1.28765 * 111.84787 * 0.02562 * 16 15 14 18 18 H 0.97001 * 125.86176 * 180.02562 * 17 16 15 19 19 C 1.37253 * 108.27936 * 0.02562 * 17 16 15 20 20 N 1.31957 * 134.70598 * 180.02562 * 19 17 16 21 21 N 1.46494 * 109.47118 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00348 * 84.99886 * 21 4 2 23 23 H 1.08001 * 119.99995 * 359.97438 * 22 21 4 24 24 C 1.38812 * 120.00332 * 180.02562 * 22 21 4 25 25 N 1.31628 * 119.99614 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00299 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47241 * 59.99976 * 26 24 22 28 28 H 1.48506 * 109.47214 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46854 * 299.99724 * 26 24 22 30 30 H 1.09008 * 109.46711 * 300.00058 * 1 2 3 31 31 H 1.09006 * 109.47254 * 59.99178 * 1 2 3 32 32 H 1.08987 * 109.47398 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46227 * 240.00524 * 2 1 3 34 34 H 1.09000 * 109.46785 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47404 * 300.00569 * 3 2 1 36 36 H 1.08998 * 109.46813 * 60.00470 * 3 2 1 37 37 H 1.09001 * 109.46652 * 65.00335 * 6 4 2 38 38 H 1.08992 * 109.47514 * 305.00424 * 6 4 2 39 39 H 1.09002 * 109.47398 * 300.00496 * 7 6 4 40 40 H 1.09001 * 109.47194 * 60.00677 * 7 6 4 41 41 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 42 42 H 1.07995 * 120.19494 * 0.02562 * 12 11 9 43 43 H 1.07996 * 120.87367 * 180.22471 * 13 12 11 44 44 H 0.97006 * 119.99500 * 264.99555 * 21 4 2 45 45 H 0.96998 * 119.99521 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5299 -2.1638 1.2490 7 6 1.9348 -2.8480 2.5563 8 7 1.4469 -4.2293 2.5560 9 6 1.6870 -5.0291 3.6139 10 8 2.3079 -4.6042 4.5682 11 6 1.1942 -6.4259 3.6134 12 6 1.4558 -7.2458 4.7153 13 6 0.9975 -8.5366 4.7222 14 6 0.2874 -8.9927 3.6076 15 7 -0.2941 -10.1563 3.2599 16 7 -0.8252 -10.0314 2.0945 17 7 -0.6475 -8.8513 1.6109 18 1 -0.9624 -8.5370 0.7490 19 6 0.0640 -8.1144 2.5245 20 7 0.5206 -6.8770 2.5654 21 7 3.5050 -0.7219 1.2487 22 6 4.1902 0.3526 1.7497 23 1 3.6507 1.2007 2.1447 24 6 5.5783 0.3524 1.7488 25 7 6.2359 -0.6810 1.2669 26 14 6.5131 1.8185 2.4315 27 1 6.1553 2.0123 3.8597 28 1 7.9730 1.5719 2.3166 29 1 6.1542 3.0365 1.6616 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3633 -1.0275 -0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.9645 -2.7028 0.4071 38 1 0.4437 -2.1651 1.1595 39 1 3.0211 -2.8467 2.6458 40 1 1.5002 -2.3090 3.3982 41 1 0.9510 -4.5684 1.7944 42 1 2.0116 -6.8622 5.5580 43 1 1.1846 -9.1867 5.5641 44 1 3.9896 -1.4835 0.8936 45 1 7.2059 -0.6810 1.2660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725443020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:35 Heat of formation + Delta-G solvation = 93.291734 kcal Electronic energy + Delta-G solvation = -27622.445860 eV Core-core repulsion = 23677.360451 eV Total energy + Delta-G solvation = -3945.085409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.83518 -40.39374 -38.65086 -37.45804 -35.00107 -34.62565 -33.06184 -32.36162 -31.63550 -30.92165 -29.46818 -26.69088 -26.11363 -25.09624 -24.20575 -23.20974 -22.92216 -21.29382 -21.02528 -19.35265 -19.25160 -18.85731 -18.08611 -17.11695 -17.06035 -16.04352 -15.56412 -15.49717 -14.98378 -14.67621 -14.09487 -13.95675 -13.93961 -13.75391 -13.49538 -13.29938 -13.09930 -12.83192 -12.69576 -12.25498 -12.13681 -12.02755 -11.73487 -11.63995 -11.24618 -10.91008 -10.79545 -10.66637 -10.59202 -10.43846 -10.26839 -10.07484 -10.00963 -9.78328 -9.72329 -9.54398 -9.45678 -8.93799 -8.82038 -6.93976 -5.75172 -3.02904 -0.34361 0.51393 1.63943 1.64380 2.50188 2.93890 3.27592 3.37283 3.45044 3.50318 3.50696 3.76439 3.90455 4.30902 4.42789 4.60481 4.91898 4.96950 5.17704 5.29164 5.34264 5.41869 5.47002 5.53418 5.68219 5.69344 5.80724 5.89148 5.98354 6.08945 6.14848 6.19558 6.25395 6.33885 6.38043 6.49095 6.62552 6.65457 6.69302 6.81199 6.88411 7.11142 7.32360 7.50034 7.63369 7.72539 8.10552 8.43059 9.54516 10.10828 10.45597 11.47226 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002462 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.669523 B =11371.468959 C =12594.050069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.050 0.950 6 C -0.136 4.136 7 C 0.119 3.881 8 N -0.702 5.702 9 C 0.564 3.436 10 O -0.517 6.517 11 C 0.158 3.842 12 C -0.121 4.121 13 C -0.001 4.001 14 C -0.026 4.026 15 N -0.238 5.238 16 N 0.009 4.991 17 N -0.402 5.402 18 H 0.459 0.541 19 C 0.216 3.784 20 N -0.447 5.447 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.406 0.594 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 -14.341 1.031 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.068 0.932 6 C -0.175 4.175 7 C -0.003 4.003 8 N -0.353 5.353 9 C 0.346 3.654 10 O -0.391 6.391 11 C 0.003 3.997 12 C -0.144 4.144 13 C -0.032 4.032 14 C -0.153 4.153 15 N -0.115 5.115 16 N 0.026 4.974 17 N -0.134 5.134 18 H 0.308 0.692 19 C -0.028 4.028 20 N -0.164 5.164 21 N -0.362 5.362 22 C -0.363 4.363 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.241 0.759 42 H 0.187 0.813 43 H 0.178 0.822 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.990 -14.749 0.879 21.771 hybrid contribution 0.784 1.064 -0.136 1.328 sum -15.206 -13.685 0.743 20.471 Atomic orbital electron populations 1.21940 0.97165 1.00612 1.00762 1.21776 0.93254 0.97745 1.00482 1.21832 1.04279 0.94831 0.98833 1.20180 0.86047 0.90958 0.95298 0.93225 1.22140 1.00607 0.98300 0.96457 1.21598 1.01533 0.78628 0.98564 1.46003 1.55983 1.13634 1.19646 1.17645 0.80550 0.83439 0.83727 1.90868 1.39832 1.74003 1.34436 1.21419 0.93659 0.95394 0.89196 1.21808 0.99865 0.92908 0.99865 1.20549 0.91989 0.95109 0.95557 1.20683 1.04412 0.92486 0.97728 1.75421 1.11354 1.20261 1.04505 1.78116 1.14200 0.99609 1.05503 1.44684 1.41716 1.08414 1.18590 0.69219 1.19793 0.99854 0.92192 0.90962 1.66291 1.10681 1.12256 1.27133 1.42439 0.98886 1.21096 1.73775 1.19141 0.88769 0.96259 1.32162 0.91077 1.24709 0.96493 0.97702 1.01966 1.69642 1.06885 1.29860 1.51648 0.86353 0.79124 0.82348 0.78897 1.21291 1.21833 1.21356 0.93263 0.93845 0.93227 0.92210 0.89477 0.95236 0.94107 0.91548 0.91442 0.89224 0.91327 0.75855 0.81332 0.82158 0.78304 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.85 37.16 0.33 -1.60 16 2 C -0.11 -1.82 2.69 -90.62 -0.24 -2.07 16 3 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 4 C 0.19 3.31 2.02 -67.94 -0.14 3.18 16 5 H 0.05 0.93 8.08 -51.92 -0.42 0.51 16 6 C -0.14 -1.96 4.65 -26.73 -0.12 -2.08 16 7 C 0.12 1.84 5.56 -4.04 -0.02 1.82 16 8 N -0.70 -9.15 5.54 -61.16 -0.34 -9.49 16 9 C 0.56 7.86 7.81 -12.20 -0.10 7.77 16 10 O -0.52 -8.91 16.29 5.35 0.09 -8.82 16 11 C 0.16 1.78 6.74 -82.93 -0.56 1.22 16 12 C -0.12 -1.11 9.55 -39.45 -0.38 -1.49 16 13 C 0.00 -0.01 10.16 -39.45 -0.40 -0.41 16 14 C -0.03 -0.26 7.38 -84.91 -0.63 -0.89 16 15 N -0.24 -2.59 12.43 32.12 0.40 -2.19 16 16 N 0.01 0.09 13.28 60.35 0.80 0.89 16 17 N -0.40 -3.08 7.06 31.13 0.22 -2.86 16 18 H 0.46 1.79 8.96 -190.26 -1.71 0.09 16 19 C 0.22 2.15 8.56 -156.28 -1.34 0.81 16 20 N -0.45 -4.71 9.54 -8.90 -0.08 -4.80 16 21 N -0.72 -16.46 4.45 -53.43 -0.24 -16.70 16 22 C -0.23 -6.00 7.57 -15.06 -0.11 -6.12 16 23 H 0.07 1.80 7.39 -52.49 -0.39 1.42 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 26 Si 0.90 22.01 29.55 -169.99 -5.02 16.98 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.57 6.32 -51.94 -0.33 0.25 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.87 6.01 -51.93 -0.31 1.55 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.81 6.17 -51.93 -0.32 0.49 16 39 H 0.09 1.73 7.75 -51.93 -0.40 1.32 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.41 4.41 7.78 -40.82 -0.32 4.09 16 42 H 0.17 1.37 7.61 -52.49 -0.40 0.97 16 43 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.38 9.48 7.80 -40.82 -0.32 9.16 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -31.91 375.08 -8.73 -40.64 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.43 Total: 9.81 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.50 Total: -2.51 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 1.48 Total: -61.74 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.91 -8.73 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725443020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.929 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds