Wall clock time and date at job start Tue Mar 31 2020 18:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47368 * 120.00773 * 2 1 3 5 5 H 1.09008 * 109.46970 * 299.99579 * 4 2 1 6 6 C 1.53001 * 109.47203 * 59.99220 * 4 2 1 7 7 C 1.53000 * 109.46886 * 184.99990 * 6 4 2 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 4 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21517 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.48125 * 120.00028 * 180.02562 * 9 8 7 12 12 C 1.39819 * 119.37218 * 179.72661 * 11 9 8 13 13 C 1.36975 * 119.60343 * 179.73291 * 12 11 9 14 14 C 1.39810 * 118.25067 * 0.56060 * 13 12 11 15 15 N 1.34651 * 135.00297 * 179.72748 * 14 13 12 16 16 N 1.28671 * 109.16062 * 179.97438 * 15 14 13 17 17 N 1.28765 * 111.84787 * 0.02562 * 16 15 14 18 18 H 0.97001 * 125.86176 * 180.02562 * 17 16 15 19 19 C 1.37253 * 108.27936 * 0.02562 * 17 16 15 20 20 N 1.31957 * 134.70598 * 180.02562 * 19 17 16 21 21 N 1.46494 * 109.47118 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00348 * 84.99886 * 21 4 2 23 23 H 1.08001 * 119.99995 * 359.97438 * 22 21 4 24 24 C 1.38812 * 120.00332 * 180.02562 * 22 21 4 25 25 N 1.31628 * 119.99614 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00299 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47241 * 59.99976 * 26 24 22 28 28 H 1.48506 * 109.47214 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46854 * 299.99724 * 26 24 22 30 30 H 1.09008 * 109.46711 * 300.00058 * 1 2 3 31 31 H 1.09006 * 109.47254 * 59.99178 * 1 2 3 32 32 H 1.08987 * 109.47398 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46227 * 240.00524 * 2 1 3 34 34 H 1.09000 * 109.46785 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47404 * 300.00569 * 3 2 1 36 36 H 1.08998 * 109.46813 * 60.00470 * 3 2 1 37 37 H 1.09001 * 109.46652 * 65.00335 * 6 4 2 38 38 H 1.08992 * 109.47514 * 305.00424 * 6 4 2 39 39 H 1.09002 * 109.47398 * 300.00496 * 7 6 4 40 40 H 1.09001 * 109.47194 * 60.00677 * 7 6 4 41 41 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 42 42 H 1.07995 * 120.19494 * 0.02562 * 12 11 9 43 43 H 1.07996 * 120.87367 * 180.22471 * 13 12 11 44 44 H 0.97006 * 119.99500 * 264.99555 * 21 4 2 45 45 H 0.96998 * 119.99521 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5299 -2.1638 1.2490 7 6 1.9348 -2.8480 2.5563 8 7 1.4469 -4.2293 2.5560 9 6 1.6870 -5.0291 3.6139 10 8 2.3079 -4.6042 4.5682 11 6 1.1942 -6.4259 3.6134 12 6 1.4558 -7.2458 4.7153 13 6 0.9975 -8.5366 4.7222 14 6 0.2874 -8.9927 3.6076 15 7 -0.2941 -10.1563 3.2599 16 7 -0.8252 -10.0314 2.0945 17 7 -0.6475 -8.8513 1.6109 18 1 -0.9624 -8.5370 0.7490 19 6 0.0640 -8.1144 2.5245 20 7 0.5206 -6.8770 2.5654 21 7 3.5050 -0.7219 1.2487 22 6 4.1902 0.3526 1.7497 23 1 3.6507 1.2007 2.1447 24 6 5.5783 0.3524 1.7488 25 7 6.2359 -0.6810 1.2669 26 14 6.5131 1.8185 2.4315 27 1 6.1553 2.0123 3.8597 28 1 7.9730 1.5719 2.3166 29 1 6.1542 3.0365 1.6616 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3633 -1.0275 -0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.9645 -2.7028 0.4071 38 1 0.4437 -2.1651 1.1595 39 1 3.0211 -2.8467 2.6458 40 1 1.5002 -2.3090 3.3982 41 1 0.9510 -4.5684 1.7944 42 1 2.0116 -6.8622 5.5580 43 1 1.1846 -9.1867 5.5641 44 1 3.9896 -1.4835 0.8936 45 1 7.2059 -0.6810 1.2660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725443020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:34 Heat of formation + Delta-G solvation = 69.969374 kcal Electronic energy + Delta-G solvation = -27623.457194 eV Core-core repulsion = 23677.360451 eV Total energy + Delta-G solvation = -3946.096743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.56662 -41.37364 -39.63886 -38.87332 -36.16595 -35.44223 -34.87896 -33.17582 -32.69827 -32.14944 -31.04054 -27.89231 -27.29118 -26.37198 -25.15029 -24.53802 -23.92020 -22.55468 -22.14537 -20.66848 -20.10205 -19.65557 -19.20106 -18.88993 -17.80147 -17.06007 -16.94579 -16.51926 -16.46542 -15.73634 -15.66684 -15.26774 -15.14477 -14.81189 -14.61682 -14.52681 -14.22944 -14.04809 -13.58895 -13.49522 -13.16815 -12.99998 -12.89473 -12.84518 -12.81005 -12.65209 -12.48116 -12.17414 -12.01527 -11.90820 -11.77710 -11.56156 -11.31956 -11.16201 -10.84164 -10.72179 -10.49378 -10.31300 -10.08830 -8.87693 -7.85611 -5.09967 -1.12836 -0.21397 0.84856 0.95992 1.48711 1.50315 1.55369 1.57667 1.92666 2.49170 2.54177 2.61624 2.98837 3.16853 3.47574 3.52575 3.65315 3.92679 3.96107 4.15785 4.21005 4.22113 4.30884 4.43142 4.54520 4.68777 4.70622 4.71870 4.83082 4.83943 4.98678 5.05667 5.12706 5.15536 5.25099 5.27048 5.35717 5.41214 5.46826 5.52508 5.61301 5.73273 5.82196 6.07545 6.36977 6.46689 6.89549 7.04234 7.43764 8.20936 8.42563 9.37901 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002462 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.669523 B =11371.468959 C =12594.050069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.180 3.820 5 H 0.043 0.957 6 C -0.121 4.121 7 C 0.130 3.870 8 N -0.692 5.692 9 C 0.564 3.436 10 O -0.557 6.557 11 C 0.144 3.856 12 C -0.120 4.120 13 C 0.013 3.987 14 C -0.035 4.035 15 N -0.259 5.259 16 N 0.010 4.990 17 N -0.382 5.382 18 H 0.475 0.525 19 C 0.205 3.795 20 N -0.446 5.446 21 N -0.730 5.730 22 C -0.210 4.210 23 H 0.075 0.925 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.956 3.044 27 H -0.283 1.283 28 H -0.302 1.302 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.419 0.581 42 H 0.178 0.822 43 H 0.194 0.806 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.408 -15.015 0.730 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.196 4.196 4 C 0.071 3.929 5 H 0.061 0.939 6 C -0.160 4.160 7 C 0.007 3.993 8 N -0.343 5.343 9 C 0.348 3.652 10 O -0.434 6.434 11 C -0.010 4.010 12 C -0.144 4.144 13 C -0.017 4.017 14 C -0.162 4.162 15 N -0.136 5.136 16 N 0.026 4.974 17 N -0.117 5.117 18 H 0.327 0.673 19 C -0.040 4.040 20 N -0.163 5.163 21 N -0.369 5.369 22 C -0.342 4.342 23 H 0.093 0.907 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.786 3.214 27 H -0.210 1.210 28 H -0.229 1.229 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.257 0.743 42 H 0.195 0.805 43 H 0.211 0.789 44 H 0.203 0.797 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.721 -15.410 0.538 24.253 hybrid contribution 1.461 1.227 -0.085 1.910 sum -17.260 -14.182 0.453 22.344 Atomic orbital electron populations 1.21856 0.93738 1.02364 1.01697 1.21643 0.96012 0.96194 0.98868 1.21768 1.01536 0.96366 0.99919 1.20435 0.83181 0.93499 0.95804 0.93913 1.22008 1.02626 0.95630 0.95702 1.21264 0.98840 0.80114 0.99090 1.45825 1.55720 1.12660 1.20077 1.18017 0.79692 0.84446 0.83056 1.90843 1.41614 1.75088 1.35844 1.21052 0.95140 0.94236 0.90536 1.21901 0.99893 0.93111 0.99455 1.20877 0.90266 0.94765 0.95812 1.21022 1.04464 0.92333 0.98396 1.75421 1.12293 1.20754 1.05090 1.78064 1.13861 1.00103 1.05327 1.44709 1.40575 1.07563 1.18834 0.67330 1.19890 1.00404 0.92061 0.91630 1.66167 1.10659 1.12629 1.26881 1.42614 1.01130 1.19813 1.73367 1.19441 0.88885 0.96506 1.29403 0.90724 1.25359 0.97667 1.00026 1.04008 1.69789 1.06257 1.31773 1.54437 0.85461 0.77372 0.80120 0.78404 1.20951 1.22865 1.20580 0.92773 0.92526 0.91091 0.92935 0.93580 0.93255 0.93933 0.91212 0.87728 0.93590 0.92005 0.74315 0.80504 0.78901 0.79685 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.85 71.98 0.64 -2.47 16 2 C -0.11 -3.28 2.69 -10.79 -0.03 -3.31 16 3 C -0.14 -4.80 8.26 71.98 0.59 -4.21 16 4 C 0.18 6.25 2.02 44.99 0.09 6.34 16 5 H 0.04 1.56 8.08 -2.38 -0.02 1.54 16 6 C -0.12 -3.28 4.65 30.59 0.14 -3.14 16 7 C 0.13 4.03 5.56 86.38 0.48 4.51 16 8 N -0.69 -17.59 5.54 -465.70 -2.58 -20.17 16 9 C 0.56 15.67 7.81 86.87 0.68 16.35 16 10 O -0.56 -19.64 16.29 -3.77 -0.06 -19.70 16 11 C 0.14 3.12 6.74 42.05 0.28 3.41 16 12 C -0.12 -2.05 9.55 22.36 0.21 -1.83 16 13 C 0.01 0.19 10.16 22.35 0.23 0.41 16 14 C -0.03 -0.63 7.38 39.83 0.29 -0.34 16 15 N -0.26 -5.16 12.43 -52.30 -0.65 -5.81 16 16 N 0.01 0.17 13.28 37.02 0.49 0.66 16 17 N -0.38 -5.07 7.06 -55.42 -0.39 -5.46 16 18 H 0.47 2.64 8.96 -219.84 -1.97 0.67 16 19 C 0.21 3.69 8.56 134.30 1.15 4.84 16 20 N -0.45 -8.73 9.54 -182.08 -1.74 -10.47 16 21 N -0.73 -33.95 4.45 -322.95 -1.44 -35.39 16 22 C -0.21 -11.06 7.57 84.03 0.64 -10.42 16 23 H 0.07 3.81 7.39 -2.91 -0.02 3.79 16 24 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 25 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 26 Si 0.96 46.35 29.55 68.60 2.03 48.38 16 27 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 28 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 29 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 30 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 1.30 6.32 -2.39 -0.02 1.28 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 1.97 6.01 -2.39 -0.01 1.96 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.10 6.17 -2.39 -0.01 2.08 16 39 H 0.05 1.85 7.75 -2.39 -0.02 1.83 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.42 8.40 7.78 -92.71 -0.72 7.68 16 42 H 0.18 2.70 7.61 -2.91 -0.02 2.68 16 43 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.37 18.98 7.80 -92.70 -0.72 18.26 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -71.53 375.08 -0.54 -72.07 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -2.35 Total: 28.48 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.87 Total: 6.14 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -6.02 Total: -135.36 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.53 -0.54 -72.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725443020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.041 kcal (2) G-P(sol) polarization free energy of solvation -71.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds