Wall clock time and date at job start Tue Mar 31 2020 16:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00303 * 2 1 4 4 O 1.21282 * 120.00477 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99436 * 0.02562 * 3 2 1 6 6 H 1.08995 * 112.51156 * 50.32185 * 5 3 2 7 7 C 1.52886 * 113.16285 * 180.22550 * 5 3 2 8 8 C 1.51435 * 84.73647 * 115.22205 * 7 5 3 9 9 C 1.38970 * 145.49525 * 180.02562 * 8 7 5 10 10 C 1.37941 * 120.35668 * 179.97438 * 9 8 7 11 11 C 1.38468 * 120.14886 * 359.97438 * 10 9 8 12 12 F 1.35099 * 120.14925 * 180.02562 * 11 10 9 13 13 C 1.38397 * 119.69728 * 0.03408 * 11 10 9 14 14 C 1.38202 * 120.10215 * 359.95296 * 13 11 10 15 15 C 1.46506 * 120.00313 * 180.02562 * 2 1 3 16 16 H 1.09000 * 109.47212 * 179.97438 * 15 2 1 17 17 C 1.53002 * 109.47035 * 300.00170 * 15 2 1 18 18 N 1.46501 * 109.46932 * 304.99709 * 17 15 2 19 19 C 1.36937 * 120.00070 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99761 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00222 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00090 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00313 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47272 * 89.99766 * 23 21 19 25 25 H 1.48501 * 109.47006 * 210.00195 * 23 21 19 26 26 H 1.48497 * 109.46631 * 329.99804 * 23 21 19 27 27 C 1.53005 * 109.46831 * 59.99767 * 15 2 1 28 28 C 1.52996 * 117.49686 * 248.62348 * 27 15 2 29 29 C 1.53000 * 117.49339 * 180.02562 * 27 15 2 30 30 H 1.08996 * 109.46845 * 269.99320 * 1 2 3 31 31 H 1.08995 * 109.46810 * 29.99980 * 1 2 3 32 32 H 1.09005 * 109.46841 * 149.99772 * 1 2 3 33 33 H 1.09002 * 113.98562 * 229.16585 * 7 5 3 34 34 H 1.08994 * 113.98933 * 1.27851 * 7 5 3 35 35 H 1.07999 * 119.82022 * 359.96020 * 9 8 7 36 36 H 1.07994 * 119.92608 * 179.97438 * 10 9 8 37 37 H 1.07995 * 119.94701 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.47369 * 64.99599 * 17 15 2 39 39 H 1.08997 * 109.47011 * 184.99706 * 17 15 2 40 40 H 0.96998 * 120.00102 * 0.02562 * 18 17 15 41 41 H 0.96996 * 120.00202 * 180.02562 * 22 21 19 42 42 H 1.08991 * 115.54941 * 34.33602 * 27 15 2 43 43 H 1.08997 * 117.50404 * 0.02562 * 28 27 15 44 44 H 1.09004 * 117.50046 * 145.02436 * 28 27 15 45 45 H 1.09000 * 117.49583 * 214.97418 * 29 27 15 46 46 H 1.08994 * 117.50353 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.6202 2.5120 0.7758 7 6 2.3019 3.6959 -0.0050 8 6 1.6991 3.9676 -1.3674 9 6 1.6886 4.8186 -2.4660 10 6 0.8605 4.5618 -3.5389 11 6 0.0328 3.4518 -3.5285 12 9 -0.7779 3.2000 -4.5794 13 6 0.0397 2.6015 -2.4365 14 6 0.8701 2.8597 -1.3623 15 6 2.1976 -1.2687 -0.0006 16 1 3.2692 -1.0695 -0.0009 17 6 1.8280 -2.0716 1.2483 18 7 2.0707 -1.2574 2.4418 19 6 1.8104 -1.7698 3.6848 20 1 1.4264 -2.7742 3.7852 21 6 2.0409 -0.9986 4.8156 22 7 2.5093 0.2254 4.6932 23 14 1.6864 -1.6977 6.5112 24 1 2.9007 -2.3767 7.0305 25 1 1.3037 -0.5962 7.4307 26 1 0.5729 -2.6760 6.4202 27 6 1.8279 -2.0705 -1.2502 28 6 1.0141 -3.3509 -1.0528 29 6 2.4925 -3.4361 -1.4355 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 2.0492 4.4423 0.7481 34 1 3.3643 3.4537 -0.0309 35 1 2.3321 5.6858 -2.4798 36 1 0.8576 5.2280 -4.3888 37 1 -0.6038 1.7344 -2.4242 38 1 0.7742 -2.3470 1.2046 39 1 2.4377 -2.9739 1.2938 40 1 2.4152 -0.3552 2.3516 41 1 2.6708 0.7642 5.4835 42 1 1.6303 -1.4811 -2.1454 43 1 0.7416 -3.6220 -0.0329 44 1 0.2806 -3.6041 -1.8184 45 1 2.7320 -3.7453 -2.4529 46 1 3.1934 -3.7631 -0.6675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725468110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:56 Heat of formation + Delta-G solvation = 34.558792 kcal Electronic energy + Delta-G solvation = -29031.268918 eV Core-core repulsion = 25031.423944 eV Total energy + Delta-G solvation = -3999.844973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.06448 -41.19109 -39.35685 -37.67849 -35.14791 -34.90747 -34.00787 -31.26509 -30.94689 -28.54672 -27.47566 -26.42045 -25.24886 -24.13030 -22.63919 -22.51700 -21.91227 -21.10145 -19.53804 -18.51910 -17.66654 -17.14355 -16.99624 -16.68932 -16.23962 -15.75569 -15.40592 -15.26470 -15.04470 -14.46344 -14.36474 -13.94151 -13.77565 -13.68635 -13.34744 -12.93154 -12.86663 -12.74442 -12.43256 -12.25627 -12.02586 -11.88735 -11.70597 -11.49499 -11.45532 -11.28834 -11.04906 -10.81643 -10.75722 -10.68517 -10.36065 -10.09947 -9.80074 -9.70501 -9.61096 -9.07788 -8.86885 -8.57581 -8.25499 -6.90765 -5.74508 -3.03785 0.91651 1.00608 2.82341 3.18174 3.39629 3.43237 3.48273 3.49779 3.75430 3.96973 4.15069 4.29572 4.47734 4.57450 4.72115 4.76830 4.87168 5.07959 5.11202 5.12415 5.25882 5.32518 5.32561 5.42247 5.49689 5.56194 5.68304 5.69309 5.75251 5.82378 5.85448 5.88194 5.94315 5.96901 6.00569 6.09651 6.10905 6.25901 6.28294 6.37897 6.44887 6.47522 6.68236 6.70698 6.96178 7.68950 7.70778 8.43159 8.48598 9.54830 10.12822 10.48503 11.47633 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.003704 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.700528 B = 7556.701713 C = 9025.559247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.588 5.588 3 C 0.535 3.465 4 O -0.532 6.532 5 C -0.060 4.060 6 H 0.125 0.875 7 C -0.057 4.057 8 C -0.121 4.121 9 C -0.073 4.073 10 C -0.148 4.148 11 C 0.095 3.905 12 F -0.139 7.139 13 C -0.119 4.119 14 C -0.093 4.093 15 C 0.161 3.839 16 H 0.104 0.896 17 C 0.144 3.856 18 N -0.727 5.727 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.159 4.159 28 C -0.184 4.184 29 C -0.172 4.172 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 5.632 -17.199 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.320 5.320 3 C 0.322 3.678 4 O -0.409 6.409 5 C -0.081 4.081 6 H 0.143 0.857 7 C -0.093 4.093 8 C -0.121 4.121 9 C -0.091 4.091 10 C -0.167 4.167 11 C 0.076 3.924 12 F -0.117 7.117 13 C -0.138 4.138 14 C -0.094 4.094 15 C 0.058 3.942 16 H 0.121 0.879 17 C 0.016 3.984 18 N -0.372 5.372 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.179 4.179 28 C -0.221 4.221 29 C -0.210 4.210 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.101 5.512 -17.110 18.685 hybrid contribution -0.504 -0.208 0.687 0.877 sum -5.605 5.304 -16.422 18.145 Atomic orbital electron populations 1.21800 0.79810 1.02209 1.02755 1.47509 1.06836 1.05282 1.72356 1.19859 0.87609 0.84524 0.75806 1.90684 1.13588 1.86765 1.49816 1.21364 0.98490 0.94300 0.93953 0.85745 1.21778 1.01450 0.94661 0.91445 1.22531 0.97744 0.95316 0.96501 1.20373 0.98078 0.99196 0.91473 1.20939 0.97835 0.97654 1.00254 1.17295 0.93277 0.96617 0.85258 1.91500 1.71048 1.94109 1.55077 1.20074 1.01156 1.00593 0.91949 1.21115 0.95948 0.97289 0.95058 1.20851 0.97903 0.82371 0.93078 0.87854 1.21101 0.97748 0.93496 0.86071 1.42295 1.78802 1.15773 1.00306 1.19189 1.36319 0.98010 0.83673 0.91338 1.24727 1.02031 0.96317 0.97689 1.69681 1.50956 1.08726 1.28338 0.86223 0.77804 0.77682 0.84658 1.21760 1.21804 1.20844 1.22579 1.05686 0.90114 0.99495 1.23188 0.94064 1.01417 1.03410 1.22931 0.96123 0.99496 1.02444 0.91490 0.91812 0.91002 0.87732 0.86501 0.85193 0.84515 0.84883 0.95628 0.95538 0.77977 0.93558 0.87981 0.87451 0.89304 0.89077 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 9.28 59.85 0.56 1.60 16 2 N -0.59 -9.63 2.24 -173.93 -0.39 -10.02 16 3 C 0.54 9.41 6.88 -10.98 -0.08 9.33 16 4 O -0.53 -11.18 14.99 5.56 0.08 -11.10 16 5 C -0.06 -0.84 2.89 -96.56 -0.28 -1.12 16 6 H 0.12 1.64 7.90 -51.93 -0.41 1.23 16 7 C -0.06 -0.72 7.91 -27.58 -0.22 -0.94 16 8 C -0.12 -1.46 7.32 -107.55 -0.79 -2.24 16 9 C -0.07 -0.75 10.04 -39.42 -0.40 -1.14 16 10 C -0.15 -1.48 10.01 -39.61 -0.40 -1.87 16 11 C 0.09 1.07 7.31 -39.44 -0.29 0.78 16 12 F -0.14 -1.60 17.27 2.25 0.04 -1.57 16 13 C -0.12 -1.38 9.61 -39.54 -0.38 -1.76 16 14 C -0.09 -1.18 6.15 -104.55 -0.64 -1.82 16 15 C 0.16 2.77 2.59 -67.92 -0.18 2.60 16 16 H 0.10 2.06 6.90 -51.93 -0.36 1.70 16 17 C 0.14 2.86 4.19 -4.04 -0.02 2.84 16 18 N -0.73 -18.41 5.43 -59.91 -0.33 -18.73 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 C -0.16 -2.16 4.97 -90.62 -0.45 -2.61 16 28 C -0.18 -2.22 9.51 -26.76 -0.25 -2.47 16 29 C -0.17 -2.11 9.93 -26.75 -0.27 -2.38 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.72 4.80 -51.93 -0.25 0.47 16 32 H 0.07 0.86 7.21 -51.93 -0.37 0.48 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.12 1.67 7.02 -51.93 -0.36 1.30 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.35 7.29 -52.49 -0.38 0.97 16 38 H 0.03 0.50 6.31 -51.93 -0.33 0.17 16 39 H 0.03 0.54 7.44 -51.93 -0.39 0.15 16 40 H 0.39 10.58 7.06 -40.82 -0.29 10.29 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.11 1.42 5.80 -51.93 -0.30 1.12 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.28 7.66 -51.93 -0.40 0.88 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -32.59 376.29 -9.88 -42.48 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.35 Total: 11.78 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -4.32 Total: -8.49 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.01 Total: -56.08 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.59 -9.88 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725468110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.037 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds