Wall clock time and date at job start Tue Mar 31 2020 16:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00303 * 2 1 4 4 O 1.21282 * 120.00477 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99436 * 0.02562 * 3 2 1 6 6 H 1.08995 * 112.51156 * 50.32185 * 5 3 2 7 7 C 1.52886 * 113.16285 * 180.22550 * 5 3 2 8 8 C 1.51435 * 84.73647 * 115.22205 * 7 5 3 9 9 C 1.38970 * 145.49525 * 180.02562 * 8 7 5 10 10 C 1.37941 * 120.35668 * 179.97438 * 9 8 7 11 11 C 1.38468 * 120.14886 * 359.97438 * 10 9 8 12 12 F 1.35099 * 120.14925 * 180.02562 * 11 10 9 13 13 C 1.38397 * 119.69728 * 0.03408 * 11 10 9 14 14 C 1.38202 * 120.10215 * 359.95296 * 13 11 10 15 15 C 1.46506 * 120.00313 * 180.02562 * 2 1 3 16 16 H 1.09000 * 109.47212 * 179.97438 * 15 2 1 17 17 C 1.53002 * 109.47035 * 300.00170 * 15 2 1 18 18 N 1.46501 * 109.46932 * 304.99709 * 17 15 2 19 19 C 1.36937 * 120.00070 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99761 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00222 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00090 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00313 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47272 * 89.99766 * 23 21 19 25 25 H 1.48501 * 109.47006 * 210.00195 * 23 21 19 26 26 H 1.48497 * 109.46631 * 329.99804 * 23 21 19 27 27 C 1.53005 * 109.46831 * 59.99767 * 15 2 1 28 28 C 1.52996 * 117.49686 * 248.62348 * 27 15 2 29 29 C 1.53000 * 117.49339 * 180.02562 * 27 15 2 30 30 H 1.08996 * 109.46845 * 269.99320 * 1 2 3 31 31 H 1.08995 * 109.46810 * 29.99980 * 1 2 3 32 32 H 1.09005 * 109.46841 * 149.99772 * 1 2 3 33 33 H 1.09002 * 113.98562 * 229.16585 * 7 5 3 34 34 H 1.08994 * 113.98933 * 1.27851 * 7 5 3 35 35 H 1.07999 * 119.82022 * 359.96020 * 9 8 7 36 36 H 1.07994 * 119.92608 * 179.97438 * 10 9 8 37 37 H 1.07995 * 119.94701 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.47369 * 64.99599 * 17 15 2 39 39 H 1.08997 * 109.47011 * 184.99706 * 17 15 2 40 40 H 0.96998 * 120.00102 * 0.02562 * 18 17 15 41 41 H 0.96996 * 120.00202 * 180.02562 * 22 21 19 42 42 H 1.08991 * 115.54941 * 34.33602 * 27 15 2 43 43 H 1.08997 * 117.50404 * 0.02562 * 28 27 15 44 44 H 1.09004 * 117.50046 * 145.02436 * 28 27 15 45 45 H 1.09000 * 117.49583 * 214.97418 * 29 27 15 46 46 H 1.08994 * 117.50353 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.6202 2.5120 0.7758 7 6 2.3019 3.6959 -0.0050 8 6 1.6991 3.9676 -1.3674 9 6 1.6886 4.8186 -2.4660 10 6 0.8605 4.5618 -3.5389 11 6 0.0328 3.4518 -3.5285 12 9 -0.7779 3.2000 -4.5794 13 6 0.0397 2.6015 -2.4365 14 6 0.8701 2.8597 -1.3623 15 6 2.1976 -1.2687 -0.0006 16 1 3.2692 -1.0695 -0.0009 17 6 1.8280 -2.0716 1.2483 18 7 2.0707 -1.2574 2.4418 19 6 1.8104 -1.7698 3.6848 20 1 1.4264 -2.7742 3.7852 21 6 2.0409 -0.9986 4.8156 22 7 2.5093 0.2254 4.6932 23 14 1.6864 -1.6977 6.5112 24 1 2.9007 -2.3767 7.0305 25 1 1.3037 -0.5962 7.4307 26 1 0.5729 -2.6760 6.4202 27 6 1.8279 -2.0705 -1.2502 28 6 1.0141 -3.3509 -1.0528 29 6 2.4925 -3.4361 -1.4355 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 2.0492 4.4423 0.7481 34 1 3.3643 3.4537 -0.0309 35 1 2.3321 5.6858 -2.4798 36 1 0.8576 5.2280 -4.3888 37 1 -0.6038 1.7344 -2.4242 38 1 0.7742 -2.3470 1.2046 39 1 2.4377 -2.9739 1.2938 40 1 2.4152 -0.3552 2.3516 41 1 2.6708 0.7642 5.4835 42 1 1.6303 -1.4811 -2.1454 43 1 0.7416 -3.6220 -0.0329 44 1 0.2806 -3.6041 -1.8184 45 1 2.7320 -3.7453 -2.4529 46 1 3.1934 -3.7631 -0.6675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725468110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:53 Heat of formation + Delta-G solvation = 16.938830 kcal Electronic energy + Delta-G solvation = -29032.032977 eV Core-core repulsion = 25031.423944 eV Total energy + Delta-G solvation = -4000.609032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 4.77 seconds Orbital eigenvalues (eV) -49.92849 -42.27268 -40.55604 -38.91376 -36.43600 -36.02851 -35.77731 -33.10687 -31.92405 -30.05114 -28.50495 -27.68330 -26.64253 -25.57779 -24.11600 -23.50493 -23.10295 -22.05110 -20.73444 -19.89865 -19.06554 -18.70391 -18.16859 -17.73702 -17.45229 -16.79389 -16.55494 -16.44556 -16.20695 -16.14827 -15.41615 -15.12471 -15.08684 -14.92720 -14.63538 -14.60593 -14.15322 -13.93369 -13.73804 -13.41440 -13.14725 -13.05913 -12.99812 -12.80202 -12.73191 -12.70779 -12.40118 -12.32581 -12.25215 -12.00405 -11.76698 -11.65740 -11.40362 -11.01907 -10.97798 -10.76033 -9.99493 -9.61124 -9.49513 -9.00011 -7.93149 -5.23285 0.03432 0.15484 1.46283 1.48368 1.51137 1.56539 1.96107 2.50358 2.55242 2.76628 2.91390 3.22526 3.38283 3.39655 3.48832 3.56353 3.70733 3.93948 3.95125 4.05434 4.11016 4.20316 4.25659 4.29847 4.31972 4.42836 4.47167 4.58198 4.61509 4.71015 4.79835 4.81448 4.87487 4.92875 4.94102 5.01643 5.04184 5.06638 5.13469 5.18371 5.21656 5.31612 5.47771 5.58044 5.60917 5.83480 6.26579 6.39372 7.13615 7.33333 8.07966 8.32305 9.29827 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.003704 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.700528 B = 7556.701713 C = 9025.559247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.588 5.588 3 C 0.524 3.476 4 O -0.578 6.578 5 C -0.061 4.061 6 H 0.128 0.872 7 C -0.058 4.058 8 C -0.128 4.128 9 C -0.071 4.071 10 C -0.139 4.139 11 C 0.086 3.914 12 F -0.140 7.140 13 C -0.122 4.122 14 C -0.105 4.105 15 C 0.168 3.832 16 H 0.067 0.933 17 C 0.148 3.852 18 N -0.741 5.741 19 C -0.245 4.245 20 H 0.077 0.923 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.973 3.027 24 H -0.291 1.291 25 H -0.295 1.295 26 H -0.267 1.267 27 C -0.166 4.166 28 C -0.167 4.167 29 C -0.169 4.169 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.145 0.855 38 H 0.041 0.959 39 H 0.025 0.975 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 5.335 -18.932 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.319 5.319 3 C 0.313 3.687 4 O -0.458 6.458 5 C -0.082 4.082 6 H 0.146 0.854 7 C -0.095 4.095 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.158 4.158 11 C 0.067 3.933 12 F -0.119 7.119 13 C -0.141 4.141 14 C -0.105 4.105 15 C 0.064 3.936 16 H 0.086 0.914 17 C 0.021 3.979 18 N -0.383 5.383 19 C -0.377 4.377 20 H 0.094 0.906 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.218 1.218 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.186 4.186 28 C -0.204 4.204 29 C -0.206 4.206 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.163 0.837 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.920 5.165 -18.872 20.754 hybrid contribution 0.063 -0.155 1.158 1.170 sum -6.857 5.009 -17.714 19.645 Atomic orbital electron populations 1.21925 0.77911 1.04440 1.02101 1.47637 1.07992 1.04753 1.71472 1.20561 0.87402 0.85913 0.74861 1.90648 1.15641 1.87567 1.51983 1.21347 0.98641 0.92718 0.95450 0.85397 1.21735 1.00037 0.94646 0.93061 1.22503 0.97724 0.95992 0.96656 1.20670 0.98149 0.99531 0.90550 1.21279 0.96470 0.97264 1.00761 1.17443 0.93662 0.97112 0.85132 1.91498 1.71154 1.94178 1.55054 1.20199 1.01059 1.01182 0.91663 1.20916 0.97243 0.97714 0.94664 1.20615 0.96191 0.83068 0.93757 0.91449 1.21233 0.98258 0.93052 0.85402 1.42497 1.78733 1.15677 1.01417 1.19606 1.35108 0.98190 0.84795 0.90551 1.25555 1.02686 0.96748 1.01480 1.69856 1.52738 1.10150 1.28935 0.85151 0.77801 0.76995 0.79845 1.21822 1.22152 1.19166 1.22395 1.07801 0.90485 0.97871 1.23212 0.94471 0.99132 1.03585 1.23022 0.96213 0.97956 1.03452 0.93492 0.89480 0.88918 0.85935 0.88639 0.82540 0.81709 0.83692 0.94113 0.95720 0.79636 0.94114 0.86918 0.88718 0.86482 0.86693 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 9.28 127.77 1.19 3.25 16 2 N -0.59 -19.68 2.24 -822.57 -1.85 -21.53 16 3 C 0.52 19.30 6.88 87.66 0.60 19.91 16 4 O -0.58 -26.02 14.99 -3.04 -0.05 -26.06 16 5 C -0.06 -1.75 2.89 -14.64 -0.04 -1.79 16 6 H 0.13 3.49 7.90 -2.39 -0.02 3.47 16 7 C -0.06 -1.52 7.91 30.04 0.24 -1.29 16 8 C -0.13 -3.01 7.32 -21.76 -0.16 -3.17 16 9 C -0.07 -1.29 10.04 22.37 0.22 -1.07 16 10 C -0.14 -2.38 10.01 22.25 0.22 -2.16 16 11 C 0.09 1.74 7.31 22.36 0.16 1.91 16 12 F -0.14 -2.92 17.27 44.97 0.78 -2.14 16 13 C -0.12 -2.64 9.61 22.30 0.21 -2.43 16 14 C -0.10 -2.57 6.15 -19.82 -0.12 -2.69 16 15 C 0.17 5.90 2.59 44.99 0.12 6.02 16 16 H 0.07 2.86 6.90 -2.39 -0.02 2.85 16 17 C 0.15 5.93 4.19 86.38 0.36 6.29 16 18 N -0.74 -38.58 5.43 -343.46 -1.87 -40.45 16 19 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 22 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 23 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 C -0.17 -4.32 4.97 -10.79 -0.05 -4.37 16 28 C -0.17 -3.62 9.51 30.58 0.29 -3.33 16 29 C -0.17 -3.86 9.93 30.58 0.30 -3.55 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.87 4.80 -2.39 -0.01 1.86 16 32 H 0.09 2.03 7.21 -2.38 -0.02 2.01 16 33 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.10 2.93 7.02 -2.39 -0.02 2.91 16 35 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.15 2.66 7.29 -2.91 -0.02 2.63 16 38 H 0.04 1.54 6.31 -2.39 -0.02 1.53 16 39 H 0.03 1.02 7.44 -2.39 -0.02 1.00 16 40 H 0.37 21.33 7.06 -92.71 -0.65 20.68 16 41 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.09 2.32 5.80 -2.39 -0.01 2.31 16 44 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.08 2.18 7.66 -2.39 -0.02 2.16 16 Total: -1.00 -72.63 376.29 4.54 -68.09 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: 0.36 Total: 38.65 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 4.85 Total: -5.14 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -3.43 Total: -121.78 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -72.63 4.54 -68.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725468110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.026 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.77 seconds