Wall clock time and date at job start Tue Mar 31 2020 17:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99848 * 2 1 4 4 H 1.08999 * 109.46714 * 329.64305 * 3 2 1 5 5 C 1.50696 * 109.47065 * 89.63881 * 3 2 1 6 6 O 1.21288 * 120.00255 * 4.99778 * 5 3 2 7 7 N 1.34780 * 120.00111 * 185.00300 * 5 3 2 8 8 C 1.46494 * 119.99859 * 180.02562 * 7 5 3 9 9 C 1.53007 * 109.47000 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.49862 * 305.06486 * 9 8 7 11 11 C 1.53631 * 109.42996 * 65.28689 * 9 8 7 12 12 N 1.46927 * 108.54217 * 174.72983 * 11 9 8 13 13 C 1.36935 * 120.63334 * 126.37000 * 12 11 9 14 14 H 1.08000 * 119.99834 * 331.88601 * 13 12 11 15 15 C 1.38810 * 120.00053 * 151.88681 * 13 12 11 16 16 N 1.31617 * 120.00078 * 333.77955 * 15 13 12 17 17 Si 1.86801 * 119.99827 * 153.77390 * 15 13 12 18 18 H 1.48494 * 109.47099 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47415 * 300.00627 * 17 15 13 20 20 H 1.48504 * 109.47092 * 60.00197 * 17 15 13 21 21 C 1.46925 * 118.73469 * 306.08625 * 12 11 9 22 22 C 1.53192 * 108.77252 * 53.86607 * 21 12 11 23 23 C 1.53038 * 109.49991 * 184.99510 * 9 8 7 24 24 F 1.39899 * 109.45870 * 58.66272 * 23 9 8 25 25 F 1.39894 * 109.45068 * 298.69782 * 23 9 8 26 26 C 1.52991 * 109.46992 * 209.63851 * 3 2 1 27 27 C 1.52999 * 117.49795 * 132.62068 * 26 3 2 28 28 C 1.52999 * 117.50096 * 63.96216 * 26 3 2 29 29 H 1.09005 * 109.47006 * 184.64887 * 1 2 3 30 30 H 1.08996 * 109.47491 * 304.64821 * 1 2 3 31 31 H 1.08999 * 109.47407 * 64.65073 * 1 2 3 32 32 H 0.97000 * 119.99438 * 359.97438 * 7 5 3 33 33 H 1.08992 * 109.47989 * 59.99881 * 8 7 5 34 34 H 1.09002 * 109.47122 * 299.98781 * 8 7 5 35 35 H 1.08998 * 109.74039 * 54.98768 * 11 9 8 36 36 H 1.09006 * 109.66160 * 294.41449 * 11 9 8 37 37 H 0.97000 * 119.99915 * 354.23508 * 16 15 13 38 38 H 1.08995 * 109.58594 * 173.64776 * 21 12 11 39 39 H 1.09000 * 109.59291 * 294.07896 * 21 12 11 40 40 H 1.09001 * 109.49799 * 65.31403 * 22 21 12 41 41 H 1.08999 * 109.49529 * 185.40900 * 22 21 12 42 42 H 1.09004 * 115.55411 * 278.29360 * 26 3 2 43 43 H 1.09004 * 117.50225 * 0.02562 * 27 26 3 44 44 H 1.09005 * 117.49829 * 145.01948 * 27 26 3 45 45 H 1.09000 * 117.50502 * 214.98004 * 28 26 3 46 46 H 1.09000 * 117.49987 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3479 1.9981 -0.5194 5 6 2.2063 1.7681 1.4208 6 8 1.9656 1.0167 2.3419 7 7 2.6492 3.0168 1.6679 8 6 2.8403 3.4662 3.0491 9 6 3.3461 4.9103 3.0501 10 1 4.2471 4.9807 2.4409 11 6 2.2601 5.8325 2.4753 12 7 2.7139 7.2242 2.6020 13 6 2.7426 8.0509 1.5108 14 1 2.8813 7.6366 0.5230 15 6 2.5933 9.4212 1.6740 16 7 1.9356 9.8926 2.7121 17 14 3.3262 10.5964 0.4205 18 1 3.0300 11.9953 0.8212 19 1 4.7969 10.4004 0.3588 20 1 2.7346 10.3277 -0.9149 21 6 3.1304 7.7138 3.9232 22 6 4.2013 6.7721 4.4829 23 6 3.6644 5.3390 4.4843 24 9 4.6282 4.4807 5.0243 25 9 2.5004 5.2782 5.2580 26 6 3.3630 1.2615 -0.7133 27 6 3.6456 2.3418 -1.7592 28 6 3.3660 0.9031 -2.2007 29 1 -0.3633 -1.0243 0.0833 30 1 -0.3634 0.5842 0.8454 31 1 -0.3634 0.4400 -0.9287 32 1 2.8419 3.6177 0.9312 33 1 3.5713 2.8254 3.5419 34 1 1.8916 3.4129 3.5831 35 1 1.3318 5.6988 3.0307 36 1 2.0968 5.5958 1.4239 37 1 1.4841 9.2837 3.3173 38 1 3.5415 8.7187 3.8275 39 1 2.2716 7.7304 4.5943 40 1 5.0942 6.8255 3.8600 41 1 4.4498 7.0685 5.5019 42 1 4.2015 0.9134 -0.1101 43 1 2.8679 3.0843 -1.9388 44 1 4.6701 2.7042 -1.8443 45 1 4.2065 0.3196 -2.5762 46 1 2.4042 0.6983 -2.6710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733475113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:11 Heat of formation + Delta-G solvation = -139.964989 kcal Electronic energy + Delta-G solvation = -30280.945153 eV Core-core repulsion = 25842.763036 eV Total energy + Delta-G solvation = -4438.182117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.66059 -46.61291 -40.28752 -38.17951 -37.40740 -36.62242 -35.07544 -32.89403 -31.16953 -30.19855 -28.98560 -26.54925 -25.19226 -25.08245 -22.71333 -22.60771 -21.77491 -21.33260 -20.47179 -19.65725 -18.08425 -17.53282 -17.00891 -16.93856 -16.28903 -16.15714 -15.81696 -15.45000 -15.21937 -14.83972 -14.62384 -14.33206 -13.94438 -13.80938 -13.69368 -13.48942 -13.38793 -13.13862 -12.98896 -12.92118 -12.23798 -12.07578 -11.91420 -11.84237 -11.78948 -11.69777 -11.44358 -10.98332 -10.93196 -10.84110 -10.80491 -10.73970 -10.54677 -10.45517 -10.13637 -9.95319 -9.54179 -9.35895 -9.08022 -8.54229 -7.15719 -6.26339 -3.44249 2.50618 2.88037 3.19055 3.39124 3.42805 3.60906 3.89120 4.09218 4.32689 4.39121 4.46420 4.52016 4.56988 4.60830 4.72733 4.76743 4.85617 5.02382 5.04351 5.18381 5.19389 5.29150 5.32752 5.38001 5.38253 5.50499 5.51902 5.60676 5.76601 5.81374 5.83808 5.87862 5.97053 6.07170 6.17519 6.24803 6.33174 6.50217 6.71825 6.75822 6.91342 7.44313 7.78860 8.15882 8.36939 8.87358 9.62837 10.04356 11.02970 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011051 B = 0.003788 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.994124 B = 7389.345888 C = 8938.456809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.106 3.894 4 H 0.087 0.913 5 C 0.493 3.507 6 O -0.528 6.528 7 N -0.718 5.718 8 C 0.125 3.875 9 C -0.155 4.155 10 H 0.103 0.897 11 C 0.155 3.845 12 N -0.597 5.597 13 C -0.361 4.361 14 H 0.060 0.940 15 C -0.018 4.018 16 N -0.908 5.908 17 Si 1.064 2.936 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.292 1.292 21 C 0.151 3.849 22 C -0.173 4.173 23 C 0.301 3.699 24 F -0.211 7.211 25 F -0.199 7.199 26 C -0.156 4.156 27 C -0.170 4.170 28 C -0.159 4.159 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.404 0.596 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.270 0.730 38 H 0.092 0.908 39 H 0.031 0.969 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 -13.872 -6.537 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.044 3.956 4 H 0.105 0.895 5 C 0.278 3.722 6 O -0.403 6.403 7 N -0.372 5.372 8 C 0.001 3.999 9 C -0.176 4.176 10 H 0.122 0.878 11 C 0.028 3.972 12 N -0.319 5.319 13 C -0.489 4.489 14 H 0.078 0.922 15 C -0.221 4.221 16 N -0.546 5.546 17 Si 0.893 3.107 18 H -0.210 1.210 19 H -0.219 1.219 20 H -0.219 1.219 21 C 0.024 3.976 22 C -0.213 4.213 23 C 0.264 3.736 24 F -0.192 7.192 25 F -0.180 7.180 26 C -0.175 4.175 27 C -0.207 4.207 28 C -0.196 4.196 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.239 0.761 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.117 0.883 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.426 -12.983 -6.212 14.596 hybrid contribution -0.344 -1.295 0.294 1.372 sum 2.082 -14.278 -5.918 15.596 Atomic orbital electron populations 1.22876 0.80587 1.03322 1.00026 1.87999 1.19966 1.24752 1.94372 1.21510 0.95044 0.86908 0.92098 0.89535 1.21219 0.77336 0.81707 0.91957 1.90717 1.49745 1.53909 1.45942 1.45955 1.67743 1.14398 1.09074 1.21314 1.01970 0.93622 0.83015 1.23039 1.04030 0.95574 0.94972 0.87845 1.20991 0.92232 0.84983 0.98944 1.44179 1.74401 1.07500 1.05863 1.19919 1.51239 0.90478 0.87267 0.92240 1.25905 0.97735 0.96335 1.02127 1.70799 1.28571 1.38393 1.16882 0.83548 0.76076 0.76357 0.74737 1.21005 1.21891 1.21851 1.20986 0.93289 0.97079 0.86225 1.23135 1.02711 0.92199 1.03288 1.20986 0.74631 0.90920 0.87045 1.92966 1.64632 1.73442 1.88142 1.92966 1.50289 1.97154 1.77639 1.22077 0.96558 1.06484 0.92358 1.23153 1.03742 0.92241 1.01598 1.22867 1.03552 0.97912 0.95287 0.89178 0.93565 0.93937 0.76101 0.90971 0.90762 0.95129 0.91461 0.91864 0.88941 0.95141 0.89168 0.90295 0.86802 0.88106 0.87738 0.88312 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.79 101.05 1.09 1.37 16 2 O -0.35 -4.46 9.85 -55.09 -0.54 -5.01 16 3 C 0.11 1.19 2.68 -27.89 -0.07 1.12 16 4 H 0.09 0.81 7.62 -51.93 -0.40 0.41 16 5 C 0.49 7.02 7.10 -10.99 -0.08 6.94 16 6 O -0.53 -9.66 16.51 -14.31 -0.24 -9.89 16 7 N -0.72 -9.39 5.29 -60.30 -0.32 -9.71 16 8 C 0.12 1.89 4.83 -4.04 -0.02 1.87 16 9 C -0.15 -2.48 2.04 -90.27 -0.18 -2.66 16 10 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 11 C 0.16 2.91 5.42 -3.48 -0.02 2.89 16 12 N -0.60 -13.46 2.84 -172.05 -0.49 -13.95 16 13 C -0.36 -9.09 9.47 -15.06 -0.14 -9.23 16 14 H 0.06 1.48 7.95 -52.49 -0.42 1.06 16 15 C -0.02 -0.47 4.65 -17.43 -0.08 -0.55 16 16 N -0.91 -25.49 12.43 55.49 0.69 -24.80 16 17 Si 1.06 23.32 29.99 -169.99 -5.10 18.23 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.15 3.24 4.52 -3.71 -0.02 3.22 16 22 C -0.17 -3.07 5.62 -26.61 -0.15 -3.22 16 23 C 0.30 5.20 1.63 -26.69 -0.04 5.16 16 24 F -0.21 -3.59 16.40 2.25 0.04 -3.55 16 25 F -0.20 -3.73 15.72 2.25 0.04 -3.69 16 26 C -0.16 -1.50 5.31 -90.63 -0.48 -1.98 16 27 C -0.17 -1.31 10.18 -26.70 -0.27 -1.59 16 28 C -0.16 -1.25 10.22 -26.70 -0.27 -1.53 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.40 4.53 7.72 -40.82 -0.32 4.21 16 33 H 0.07 1.14 7.63 -51.93 -0.40 0.74 16 34 H 0.07 1.22 7.97 -51.93 -0.41 0.81 16 35 H 0.03 0.61 7.92 -51.93 -0.41 0.20 16 36 H 0.07 1.18 7.16 -51.93 -0.37 0.81 16 37 H 0.27 7.69 6.84 -40.82 -0.28 7.41 16 38 H 0.09 2.21 6.35 -51.93 -0.33 1.88 16 39 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.11 1.18 8.13 -51.93 -0.42 0.76 16 43 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -31.00 379.12 -8.12 -39.12 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.17 Total: 5.72 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.74 Total: 1.82 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.12 Total: -48.46 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.78 Total: -14.90 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.07 Total: -7.25 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.10 Total: 18.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.00 -8.12 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733475113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.846 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds