Wall clock time and date at job start Tue Mar 31 2020 17:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99848 * 2 1 4 4 H 1.08999 * 109.46714 * 329.64305 * 3 2 1 5 5 C 1.50696 * 109.47065 * 89.63881 * 3 2 1 6 6 O 1.21288 * 120.00255 * 4.99778 * 5 3 2 7 7 N 1.34780 * 120.00111 * 185.00300 * 5 3 2 8 8 C 1.46494 * 119.99859 * 180.02562 * 7 5 3 9 9 C 1.53007 * 109.47000 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.49862 * 305.06486 * 9 8 7 11 11 C 1.53631 * 109.42996 * 65.28689 * 9 8 7 12 12 N 1.46927 * 108.54217 * 174.72983 * 11 9 8 13 13 C 1.36935 * 120.63334 * 126.37000 * 12 11 9 14 14 H 1.08000 * 119.99834 * 331.88601 * 13 12 11 15 15 C 1.38810 * 120.00053 * 151.88681 * 13 12 11 16 16 N 1.31617 * 120.00078 * 333.77955 * 15 13 12 17 17 Si 1.86801 * 119.99827 * 153.77390 * 15 13 12 18 18 H 1.48494 * 109.47099 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47415 * 300.00627 * 17 15 13 20 20 H 1.48504 * 109.47092 * 60.00197 * 17 15 13 21 21 C 1.46925 * 118.73469 * 306.08625 * 12 11 9 22 22 C 1.53192 * 108.77252 * 53.86607 * 21 12 11 23 23 C 1.53038 * 109.49991 * 184.99510 * 9 8 7 24 24 F 1.39899 * 109.45870 * 58.66272 * 23 9 8 25 25 F 1.39894 * 109.45068 * 298.69782 * 23 9 8 26 26 C 1.52991 * 109.46992 * 209.63851 * 3 2 1 27 27 C 1.52999 * 117.49795 * 132.62068 * 26 3 2 28 28 C 1.52999 * 117.50096 * 63.96216 * 26 3 2 29 29 H 1.09005 * 109.47006 * 184.64887 * 1 2 3 30 30 H 1.08996 * 109.47491 * 304.64821 * 1 2 3 31 31 H 1.08999 * 109.47407 * 64.65073 * 1 2 3 32 32 H 0.97000 * 119.99438 * 359.97438 * 7 5 3 33 33 H 1.08992 * 109.47989 * 59.99881 * 8 7 5 34 34 H 1.09002 * 109.47122 * 299.98781 * 8 7 5 35 35 H 1.08998 * 109.74039 * 54.98768 * 11 9 8 36 36 H 1.09006 * 109.66160 * 294.41449 * 11 9 8 37 37 H 0.97000 * 119.99915 * 354.23508 * 16 15 13 38 38 H 1.08995 * 109.58594 * 173.64776 * 21 12 11 39 39 H 1.09000 * 109.59291 * 294.07896 * 21 12 11 40 40 H 1.09001 * 109.49799 * 65.31403 * 22 21 12 41 41 H 1.08999 * 109.49529 * 185.40900 * 22 21 12 42 42 H 1.09004 * 115.55411 * 278.29360 * 26 3 2 43 43 H 1.09004 * 117.50225 * 0.02562 * 27 26 3 44 44 H 1.09005 * 117.49829 * 145.01948 * 27 26 3 45 45 H 1.09000 * 117.50502 * 214.98004 * 28 26 3 46 46 H 1.09000 * 117.49987 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3479 1.9981 -0.5194 5 6 2.2063 1.7681 1.4208 6 8 1.9656 1.0167 2.3419 7 7 2.6492 3.0168 1.6679 8 6 2.8403 3.4662 3.0491 9 6 3.3461 4.9103 3.0501 10 1 4.2471 4.9807 2.4409 11 6 2.2601 5.8325 2.4753 12 7 2.7139 7.2242 2.6020 13 6 2.7426 8.0509 1.5108 14 1 2.8813 7.6366 0.5230 15 6 2.5933 9.4212 1.6740 16 7 1.9356 9.8926 2.7121 17 14 3.3262 10.5964 0.4205 18 1 3.0300 11.9953 0.8212 19 1 4.7969 10.4004 0.3588 20 1 2.7346 10.3277 -0.9149 21 6 3.1304 7.7138 3.9232 22 6 4.2013 6.7721 4.4829 23 6 3.6644 5.3390 4.4843 24 9 4.6282 4.4807 5.0243 25 9 2.5004 5.2782 5.2580 26 6 3.3630 1.2615 -0.7133 27 6 3.6456 2.3418 -1.7592 28 6 3.3660 0.9031 -2.2007 29 1 -0.3633 -1.0243 0.0833 30 1 -0.3634 0.5842 0.8454 31 1 -0.3634 0.4400 -0.9287 32 1 2.8419 3.6177 0.9312 33 1 3.5713 2.8254 3.5419 34 1 1.8916 3.4129 3.5831 35 1 1.3318 5.6988 3.0307 36 1 2.0968 5.5958 1.4239 37 1 1.4841 9.2837 3.3173 38 1 3.5415 8.7187 3.8275 39 1 2.2716 7.7304 4.5943 40 1 5.0942 6.8255 3.8600 41 1 4.4498 7.0685 5.5019 42 1 4.2015 0.9134 -0.1101 43 1 2.8679 3.0843 -1.9388 44 1 4.6701 2.7042 -1.8443 45 1 4.2065 0.3196 -2.5762 46 1 2.4042 0.6983 -2.6710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733475113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:10 Heat of formation + Delta-G solvation = -158.149106 kcal Electronic energy + Delta-G solvation = -30281.733675 eV Core-core repulsion = 25842.763036 eV Total energy + Delta-G solvation = -4438.970640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.09884 -48.05490 -41.34413 -39.39374 -38.71033 -37.40167 -36.46178 -34.53161 -32.59663 -31.90250 -29.94917 -27.55512 -26.91732 -26.37183 -24.21216 -23.26707 -23.07622 -22.42467 -21.52976 -21.15186 -19.59254 -18.86489 -18.38746 -18.06135 -17.52902 -17.33963 -17.04316 -16.62268 -16.49227 -15.86362 -15.80675 -15.62908 -15.53415 -15.32481 -14.98508 -14.91174 -14.60123 -14.42666 -14.32392 -13.98528 -13.75813 -13.61465 -13.38786 -13.13806 -12.71357 -12.65441 -12.50600 -12.40581 -12.29584 -12.21833 -12.16960 -11.89335 -11.87027 -11.45008 -11.39778 -11.38126 -11.16436 -10.47128 -10.39409 -10.26845 -9.04548 -8.27148 -5.43116 1.40846 1.65129 1.71052 1.82730 1.89472 2.41953 2.61371 2.72689 3.03490 3.10411 3.17178 3.24160 3.39843 3.46416 3.52591 3.73675 3.78270 3.81590 3.93910 4.03128 4.13310 4.17791 4.34089 4.35903 4.38220 4.47415 4.53859 4.56009 4.62500 4.73567 4.74568 4.77987 4.83662 4.92889 5.00314 5.02954 5.15173 5.18348 5.22937 5.27943 5.85232 5.91826 6.36353 6.39799 6.96102 7.06809 7.71436 8.14854 9.00160 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011051 B = 0.003788 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.994124 B = 7389.345888 C = 8938.456809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.376 6.376 3 C 0.111 3.889 4 H 0.110 0.890 5 C 0.491 3.509 6 O -0.574 6.574 7 N -0.706 5.706 8 C 0.135 3.865 9 C -0.137 4.137 10 H 0.120 0.880 11 C 0.157 3.843 12 N -0.611 5.611 13 C -0.357 4.357 14 H 0.067 0.933 15 C -0.070 4.070 16 N -0.941 5.941 17 Si 1.112 2.888 18 H -0.300 1.300 19 H -0.277 1.277 20 H -0.274 1.274 21 C 0.157 3.843 22 C -0.164 4.164 23 C 0.299 3.701 24 F -0.205 7.205 25 F -0.210 7.210 26 C -0.174 4.174 27 C -0.158 4.158 28 C -0.152 4.152 29 H 0.101 0.899 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.416 0.584 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.015 0.985 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.065 0.935 39 H 0.010 0.990 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 -14.528 -8.767 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.293 6.293 3 C 0.050 3.950 4 H 0.128 0.872 5 C 0.278 3.722 6 O -0.453 6.453 7 N -0.360 5.360 8 C 0.010 3.990 9 C -0.158 4.158 10 H 0.138 0.862 11 C 0.031 3.969 12 N -0.335 5.335 13 C -0.486 4.486 14 H 0.085 0.915 15 C -0.267 4.267 16 N -0.582 5.582 17 Si 0.937 3.063 18 H -0.226 1.226 19 H -0.203 1.203 20 H -0.199 1.199 21 C 0.031 3.969 22 C -0.203 4.203 23 C 0.263 3.737 24 F -0.186 7.186 25 F -0.191 7.191 26 C -0.192 4.192 27 C -0.195 4.195 28 C -0.189 4.189 29 H 0.119 0.881 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.253 0.747 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.028 0.972 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.587 -13.665 -8.469 16.472 hybrid contribution -0.744 -1.160 1.017 1.713 sum 2.843 -14.825 -7.452 16.834 Atomic orbital electron populations 1.23036 0.79473 1.04147 1.00622 1.87976 1.21354 1.25685 1.94279 1.21601 0.96448 0.86907 0.90071 0.87213 1.21897 0.76070 0.81263 0.92967 1.90693 1.51821 1.55138 1.47631 1.45838 1.67190 1.14430 1.08584 1.21078 1.00993 0.92849 0.84082 1.22837 1.03604 0.95153 0.94212 0.86194 1.21043 0.92400 0.83555 0.99875 1.44393 1.74955 1.08566 1.05577 1.20237 1.49206 0.90850 0.88276 0.91500 1.27149 0.97945 0.98475 1.03095 1.70923 1.30968 1.38036 1.18300 0.82888 0.76247 0.73663 0.73494 1.22637 1.20255 1.19939 1.20758 0.93513 0.96771 0.85844 1.22991 1.01541 0.91464 1.04317 1.21036 0.74362 0.90790 0.87541 1.92977 1.64339 1.73167 1.88122 1.92955 1.50947 1.97181 1.78001 1.21999 0.95197 1.08938 0.93113 1.23255 1.04545 0.92179 0.99491 1.22964 1.04224 0.98247 0.93479 0.88065 0.95133 0.91413 0.74687 0.91289 0.92329 0.96662 0.89956 0.93640 0.91611 0.97174 0.87917 0.88584 0.88058 0.87135 0.86938 0.87490 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.79 113.37 1.22 1.65 16 2 O -0.38 -9.04 9.85 -129.99 -1.28 -10.32 16 3 C 0.11 2.32 2.68 29.84 0.08 2.40 16 4 H 0.11 1.75 7.62 -2.39 -0.02 1.73 16 5 C 0.49 13.59 7.10 87.66 0.62 14.21 16 6 O -0.57 -21.15 16.51 15.93 0.26 -20.88 16 7 N -0.71 -17.42 5.29 -463.06 -2.45 -19.87 16 8 C 0.13 3.93 4.83 86.38 0.42 4.35 16 9 C -0.14 -4.16 2.04 -10.57 -0.02 -4.18 16 10 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 11 C 0.16 5.71 5.42 86.51 0.47 6.18 16 12 N -0.61 -27.25 2.84 -698.25 -1.98 -29.23 16 13 C -0.36 -17.61 9.47 84.03 0.80 -16.81 16 14 H 0.07 3.17 7.95 -2.91 -0.02 3.14 16 15 C -0.07 -3.62 4.65 84.86 0.39 -3.22 16 16 N -0.94 -53.91 12.43 21.65 0.27 -53.64 16 17 Si 1.11 46.36 29.99 68.60 2.06 48.42 16 18 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 21 C 0.16 6.83 4.52 86.36 0.39 7.22 16 22 C -0.16 -5.58 5.62 30.67 0.17 -5.41 16 23 C 0.30 9.95 1.63 30.62 0.05 10.00 16 24 F -0.21 -6.59 16.40 44.97 0.74 -5.85 16 25 F -0.21 -7.78 15.72 44.97 0.71 -7.07 16 26 C -0.17 -2.99 5.31 -10.80 -0.06 -3.05 16 27 C -0.16 -1.94 10.18 30.62 0.31 -1.63 16 28 C -0.15 -1.98 10.22 30.62 0.31 -1.67 16 29 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.03 0.64 8.12 -2.39 -0.02 0.63 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.42 8.27 7.72 -92.71 -0.72 7.56 16 33 H 0.07 2.10 7.63 -2.39 -0.02 2.09 16 34 H 0.06 1.92 7.97 -2.39 -0.02 1.90 16 35 H 0.02 0.61 7.92 -2.39 -0.02 0.59 16 36 H 0.08 2.71 7.16 -2.38 -0.02 2.70 16 37 H 0.25 14.96 6.84 -92.71 -0.63 14.32 16 38 H 0.07 3.21 6.35 -2.39 -0.02 3.20 16 39 H 0.01 0.48 7.67 -2.39 -0.02 0.46 16 40 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.10 1.99 8.13 -2.38 -0.02 1.97 16 43 H 0.11 1.16 8.07 -2.39 -0.02 1.14 16 44 H 0.11 1.22 8.14 -2.38 -0.02 1.21 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.62 379.12 3.89 -63.73 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.41 Total: 24.66 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.16 Total: 10.05 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -4.16 Total: -102.74 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.02 Total: -31.20 kcal Atomic # 9 Polarization: -14.37 SS G_CDS: 1.44 Total: -12.92 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.06 Total: 48.42 kcal Total: -67.62 3.89 -63.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733475113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.422 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds