Wall clock time and date at job start Tue Mar 31 2020 17:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40171 * 120.36901 * 2 1 4 4 N 1.31252 * 120.36363 * 179.97438 * 3 2 1 5 5 C 1.33988 * 120.88120 * 359.96631 * 4 3 2 6 6 N 1.32499 * 132.34823 * 180.02562 * 5 4 3 7 7 C 1.33473 * 109.75243 * 180.02562 * 6 5 4 8 8 C 1.48127 * 125.32200 * 180.02562 * 7 6 5 9 9 O 1.21524 * 119.99860 * 186.69156 * 8 7 6 10 10 N 1.34780 * 119.99965 * 6.68838 * 8 7 6 11 11 C 1.46497 * 119.99944 * 5.34534 * 10 8 7 12 12 C 1.46501 * 119.99675 * 185.34910 * 10 8 7 13 13 C 1.53003 * 109.47171 * 269.99983 * 12 10 8 14 14 C 1.52995 * 109.47639 * 180.02562 * 13 12 10 15 15 N 1.46494 * 109.47527 * 179.97438 * 14 13 12 16 16 C 1.46504 * 119.99748 * 89.99824 * 15 14 13 17 17 C 1.36937 * 120.00228 * 269.99951 * 15 14 13 18 18 H 1.08003 * 119.99686 * 24.48998 * 17 15 14 19 19 C 1.38808 * 120.00234 * 204.48795 * 17 15 14 20 20 N 1.31619 * 120.00016 * 13.12133 * 19 17 15 21 21 Si 1.86803 * 120.00225 * 193.12197 * 19 17 15 22 22 H 1.48497 * 109.46992 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47005 * 119.99896 * 21 19 17 24 24 H 1.48498 * 109.46793 * 240.00241 * 21 19 17 25 25 N 1.31988 * 109.35263 * 0.25603 * 7 6 5 26 26 N 1.36875 * 120.21810 * 0.03282 * 5 4 3 27 27 C 1.35687 * 120.36322 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46729 * 270.02192 * 1 2 3 29 29 H 1.08994 * 109.47032 * 30.02213 * 1 2 3 30 30 H 1.09002 * 109.47056 * 150.01890 * 1 2 3 31 31 H 1.08005 * 119.81523 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47339 * 274.98920 * 11 10 8 33 33 H 1.09004 * 109.47033 * 34.99829 * 11 10 8 34 34 H 1.09008 * 109.46664 * 154.98668 * 11 10 8 35 35 H 1.08998 * 109.47364 * 29.99706 * 12 10 8 36 36 H 1.08998 * 109.47379 * 150.00437 * 12 10 8 37 37 H 1.09008 * 109.47270 * 300.00274 * 13 12 10 38 38 H 1.09002 * 109.47222 * 59.99610 * 13 12 10 39 39 H 1.08999 * 109.46996 * 300.00244 * 14 13 12 40 40 H 1.09002 * 109.46870 * 59.99398 * 14 13 12 41 41 H 1.09000 * 109.46593 * 95.03881 * 16 15 14 42 42 H 1.09004 * 109.46920 * 215.03321 * 16 15 14 43 43 H 1.08998 * 109.47568 * 335.03812 * 16 15 14 44 44 H 0.97003 * 120.00342 * 179.97438 * 20 19 17 45 45 H 1.07995 * 120.48685 * 0.04207 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2158 0.0593 0.0017 6 7 5.5143 -0.2043 0.0029 7 6 5.7065 -1.5251 0.0032 8 6 7.0258 -2.1985 0.0050 9 8 7.0919 -3.4058 -0.1175 10 7 8.1529 -1.4724 0.1423 11 6 8.0698 -0.0339 0.4069 12 6 9.4611 -2.1216 0.0269 13 6 9.9120 -2.6089 1.4054 14 6 11.2785 -3.2864 1.2851 15 7 11.7105 -3.7524 2.6051 16 6 11.3559 -5.0997 3.0584 17 6 12.4458 -2.9288 3.4152 18 1 12.3828 -1.8573 3.2956 19 6 13.2719 -3.4711 4.3900 20 7 13.5520 -4.7571 4.3743 21 14 13.9860 -2.3759 5.7241 22 1 13.5227 -0.9800 5.5193 23 1 13.5346 -2.8577 7.0543 24 1 15.4689 -2.4193 5.6589 25 7 4.5372 -2.1373 -0.0033 26 7 3.5541 -1.1390 0.0018 27 6 2.1929 -1.1708 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6786 2.1465 -0.0004 32 1 7.9632 0.5033 -0.5354 33 1 7.2068 0.1696 1.0410 34 1 8.9777 0.2956 0.9124 35 1 9.3866 -2.9709 -0.6522 36 1 10.1878 -1.4082 -0.3617 37 1 9.9865 -1.7596 2.0846 38 1 9.1854 -3.3223 1.7942 39 1 11.2045 -4.1356 0.6058 40 1 12.0049 -2.5727 0.8965 41 1 12.1743 -5.7846 2.8370 42 1 11.1747 -5.0854 4.1332 43 1 10.4549 -5.4313 2.5424 44 1 14.1296 -5.1360 5.0553 45 1 1.6668 -2.1139 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755038864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:54 Heat of formation + Delta-G solvation = 142.565354 kcal Electronic energy + Delta-G solvation = -27522.450566 eV Core-core repulsion = 23579.501821 eV Total energy + Delta-G solvation = -3942.948745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.40058 -40.18509 -39.02589 -36.30161 -35.41423 -35.13223 -33.65719 -32.21868 -31.25431 -30.22456 -28.08550 -26.87902 -26.25986 -25.72549 -25.32936 -23.70734 -23.27423 -21.87413 -20.15351 -19.76969 -18.80635 -18.52205 -17.24488 -17.11416 -16.59814 -16.34661 -15.88591 -15.40187 -14.79402 -14.74491 -14.30673 -14.19355 -13.92563 -13.72152 -13.38073 -13.27008 -13.15422 -13.08226 -12.88973 -12.71140 -12.54332 -12.36906 -12.07157 -11.63050 -11.21563 -10.93887 -10.76861 -10.64549 -10.60949 -10.55695 -10.37579 -10.18793 -10.10601 -10.05119 -9.79946 -9.65003 -9.25582 -8.66724 -8.42583 -6.60851 -5.63094 -3.10991 -0.20487 0.08117 1.25450 1.45229 2.51847 2.69291 2.86336 3.16239 3.42507 3.49227 3.51609 3.53654 3.66329 3.95223 4.02118 4.31731 4.55425 4.57288 4.83166 4.98634 5.13121 5.25345 5.28060 5.32695 5.45011 5.47638 5.50165 5.52877 5.59033 5.71975 5.86593 6.03352 6.07774 6.14718 6.26738 6.57024 6.64744 6.83225 6.87539 6.90336 7.12699 7.17723 7.35138 7.48010 7.83692 7.88909 7.97779 8.50433 9.33240 9.97568 10.48154 11.41322 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021620 B = 0.002092 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.758646 B =13381.248324 C =13696.899872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.185 4.185 3 C 0.212 3.788 4 N -0.445 5.445 5 C 0.433 3.567 6 N -0.491 5.491 7 C 0.247 3.753 8 C 0.602 3.398 9 O -0.503 6.503 10 N -0.586 5.586 11 C 0.081 3.919 12 C 0.118 3.882 13 C -0.153 4.153 14 C 0.156 3.844 15 N -0.603 5.603 16 C 0.161 3.839 17 C -0.251 4.251 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 N -0.267 5.267 26 N -0.325 5.325 27 C 0.167 3.833 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.193 0.807 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.000 1.000 44 H 0.251 0.749 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.573 13.353 -11.965 34.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.193 4.193 3 C 0.025 3.975 4 N -0.158 5.158 5 C 0.073 3.927 6 N -0.226 5.226 7 C -0.036 4.036 8 C 0.383 3.617 9 O -0.375 6.375 10 N -0.318 5.318 11 C -0.062 4.062 12 C -0.004 4.004 13 C -0.195 4.195 14 C 0.028 3.972 15 N -0.325 5.325 16 C 0.017 3.983 17 C -0.381 4.381 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.218 1.218 25 N -0.101 5.101 26 N -0.105 5.105 27 C 0.030 3.970 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.209 0.791 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.061 0.939 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -28.293 12.651 -11.917 33.205 hybrid contribution -0.378 0.064 0.918 0.995 sum -28.671 12.715 -10.999 33.237 Atomic orbital electron populations 1.20650 0.86900 1.04379 1.03720 1.20679 0.99459 0.91998 1.07152 1.23644 0.88094 0.98977 0.86805 1.68094 1.08722 1.22346 1.16646 1.22915 0.89607 0.82858 0.97313 1.71224 1.10065 1.13594 1.27711 1.24332 0.95037 0.87662 0.96607 1.16396 0.80714 0.85660 0.78930 1.90873 1.85424 1.12410 1.48790 1.47734 1.05456 1.10043 1.68577 1.22088 1.03441 0.78547 1.02105 1.21767 0.80976 0.97953 0.99681 1.22651 1.00708 1.01261 0.94839 1.20624 0.92103 0.96442 0.88069 1.43870 1.61150 1.13937 1.13548 1.20778 0.94441 0.85839 0.97287 1.19203 1.17878 0.89309 1.11705 0.91545 1.25061 0.97895 0.96077 1.00855 1.70081 1.39035 1.11078 1.35035 0.86209 0.78522 0.79936 0.82040 1.20337 1.21715 1.21775 1.78990 0.95149 1.06868 1.29082 1.49044 1.07084 1.08853 1.45486 1.22072 0.79341 1.01721 0.93844 0.89917 0.89844 0.90455 0.79057 0.91933 0.89568 0.90767 0.89875 0.89876 0.91971 0.92238 0.94480 0.93459 0.95045 0.94487 0.98189 0.93896 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.04 10.03 36.00 0.36 0.40 16 2 C -0.19 -0.62 5.87 -104.81 -0.61 -1.23 16 3 C 0.21 0.94 10.96 -17.07 -0.19 0.75 16 4 N -0.44 -4.24 10.48 -13.79 -0.14 -4.38 16 5 C 0.43 5.37 8.99 -323.04 -2.90 2.47 16 6 N -0.49 -7.06 7.90 -12.23 -0.10 -7.15 16 7 C 0.25 3.89 7.56 -156.78 -1.19 2.70 16 8 C 0.60 10.28 7.68 -12.20 -0.09 10.19 16 9 O -0.50 -10.05 16.71 5.34 0.09 -9.96 16 10 N -0.59 -8.88 2.87 -182.58 -0.52 -9.40 16 11 C 0.08 1.01 9.27 59.85 0.55 1.57 16 12 C 0.12 1.80 5.34 -4.04 -0.02 1.78 16 13 C -0.15 -2.90 5.86 -26.73 -0.16 -3.05 16 14 C 0.16 3.35 5.64 -4.05 -0.02 3.32 16 15 N -0.60 -16.04 2.92 -181.12 -0.53 -16.56 16 16 C 0.16 4.28 8.99 59.85 0.54 4.81 16 17 C -0.25 -7.16 9.64 -15.06 -0.15 -7.31 16 18 H 0.07 1.84 7.86 -52.48 -0.41 1.43 16 19 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 20 N -0.91 -27.57 10.81 55.49 0.60 -26.97 16 21 Si 0.90 22.53 29.57 -169.99 -5.03 17.50 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 N -0.27 -4.04 12.78 32.02 0.41 -3.63 16 26 N -0.32 -3.71 3.91 -13.80 -0.05 -3.76 16 27 C 0.17 1.02 10.97 -16.54 -0.18 0.84 16 28 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 29 H 0.08 -0.14 8.10 -51.93 -0.42 -0.56 16 30 H 0.08 -0.07 8.09 -51.93 -0.42 -0.49 16 31 H 0.19 -0.01 8.06 -52.48 -0.42 -0.43 16 32 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.09 1.15 5.89 -51.93 -0.31 0.84 16 34 H 0.07 0.85 8.03 -51.92 -0.42 0.43 16 35 H 0.08 1.31 7.50 -51.93 -0.39 0.92 16 36 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 37 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 41 H 0.03 0.89 7.31 -51.93 -0.38 0.51 16 42 H 0.04 1.04 7.44 -51.93 -0.39 0.65 16 43 H 0.00 -0.01 8.03 -51.93 -0.42 -0.43 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -38.35 380.59 -10.16 -48.51 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -6.48 Total: -7.06 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: -4.15 Total: 17.13 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -0.34 Total: -71.86 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.35 -10.16 -48.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755038864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.080 kcal (2) G-P(sol) polarization free energy of solvation -38.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds