Wall clock time and date at job start Tue Mar 31 2020 17:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40171 * 120.36901 * 2 1 4 4 N 1.31252 * 120.36363 * 179.97438 * 3 2 1 5 5 C 1.33988 * 120.88120 * 359.96631 * 4 3 2 6 6 N 1.32499 * 132.34823 * 180.02562 * 5 4 3 7 7 C 1.33473 * 109.75243 * 180.02562 * 6 5 4 8 8 C 1.48127 * 125.32200 * 180.02562 * 7 6 5 9 9 O 1.21524 * 119.99860 * 186.69156 * 8 7 6 10 10 N 1.34780 * 119.99965 * 6.68838 * 8 7 6 11 11 C 1.46497 * 119.99944 * 5.34534 * 10 8 7 12 12 C 1.46501 * 119.99675 * 185.34910 * 10 8 7 13 13 C 1.53003 * 109.47171 * 269.99983 * 12 10 8 14 14 C 1.52995 * 109.47639 * 180.02562 * 13 12 10 15 15 N 1.46494 * 109.47527 * 179.97438 * 14 13 12 16 16 C 1.46504 * 119.99748 * 89.99824 * 15 14 13 17 17 C 1.36937 * 120.00228 * 269.99951 * 15 14 13 18 18 H 1.08003 * 119.99686 * 24.48998 * 17 15 14 19 19 C 1.38808 * 120.00234 * 204.48795 * 17 15 14 20 20 N 1.31619 * 120.00016 * 13.12133 * 19 17 15 21 21 Si 1.86803 * 120.00225 * 193.12197 * 19 17 15 22 22 H 1.48497 * 109.46992 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47005 * 119.99896 * 21 19 17 24 24 H 1.48498 * 109.46793 * 240.00241 * 21 19 17 25 25 N 1.31988 * 109.35263 * 0.25603 * 7 6 5 26 26 N 1.36875 * 120.21810 * 0.03282 * 5 4 3 27 27 C 1.35687 * 120.36322 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46729 * 270.02192 * 1 2 3 29 29 H 1.08994 * 109.47032 * 30.02213 * 1 2 3 30 30 H 1.09002 * 109.47056 * 150.01890 * 1 2 3 31 31 H 1.08005 * 119.81523 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47339 * 274.98920 * 11 10 8 33 33 H 1.09004 * 109.47033 * 34.99829 * 11 10 8 34 34 H 1.09008 * 109.46664 * 154.98668 * 11 10 8 35 35 H 1.08998 * 109.47364 * 29.99706 * 12 10 8 36 36 H 1.08998 * 109.47379 * 150.00437 * 12 10 8 37 37 H 1.09008 * 109.47270 * 300.00274 * 13 12 10 38 38 H 1.09002 * 109.47222 * 59.99610 * 13 12 10 39 39 H 1.08999 * 109.46996 * 300.00244 * 14 13 12 40 40 H 1.09002 * 109.46870 * 59.99398 * 14 13 12 41 41 H 1.09000 * 109.46593 * 95.03881 * 16 15 14 42 42 H 1.09004 * 109.46920 * 215.03321 * 16 15 14 43 43 H 1.08998 * 109.47568 * 335.03812 * 16 15 14 44 44 H 0.97003 * 120.00342 * 179.97438 * 20 19 17 45 45 H 1.07995 * 120.48685 * 0.04207 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2158 0.0593 0.0017 6 7 5.5143 -0.2043 0.0029 7 6 5.7065 -1.5251 0.0032 8 6 7.0258 -2.1985 0.0050 9 8 7.0919 -3.4058 -0.1175 10 7 8.1529 -1.4724 0.1423 11 6 8.0698 -0.0339 0.4069 12 6 9.4611 -2.1216 0.0269 13 6 9.9120 -2.6089 1.4054 14 6 11.2785 -3.2864 1.2851 15 7 11.7105 -3.7524 2.6051 16 6 11.3559 -5.0997 3.0584 17 6 12.4458 -2.9288 3.4152 18 1 12.3828 -1.8573 3.2956 19 6 13.2719 -3.4711 4.3900 20 7 13.5520 -4.7571 4.3743 21 14 13.9860 -2.3759 5.7241 22 1 13.5227 -0.9800 5.5193 23 1 13.5346 -2.8577 7.0543 24 1 15.4689 -2.4193 5.6589 25 7 4.5372 -2.1373 -0.0033 26 7 3.5541 -1.1390 0.0018 27 6 2.1929 -1.1708 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6786 2.1465 -0.0004 32 1 7.9632 0.5033 -0.5354 33 1 7.2068 0.1696 1.0410 34 1 8.9777 0.2956 0.9124 35 1 9.3866 -2.9709 -0.6522 36 1 10.1878 -1.4082 -0.3617 37 1 9.9865 -1.7596 2.0846 38 1 9.1854 -3.3223 1.7942 39 1 11.2045 -4.1356 0.6058 40 1 12.0049 -2.5727 0.8965 41 1 12.1743 -5.7846 2.8370 42 1 11.1747 -5.0854 4.1332 43 1 10.4549 -5.4313 2.5424 44 1 14.1296 -5.1360 5.0553 45 1 1.6668 -2.1139 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755038864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:53 Heat of formation + Delta-G solvation = 119.047943 kcal Electronic energy + Delta-G solvation = -27523.470357 eV Core-core repulsion = 23579.501821 eV Total energy + Delta-G solvation = -3943.968536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -44.19644 -41.25685 -39.86338 -37.98119 -36.93423 -35.86328 -34.40043 -33.85707 -32.11415 -32.03981 -28.82182 -28.13489 -27.86084 -27.17200 -26.18877 -24.91339 -23.98457 -23.36003 -21.97061 -20.79143 -19.63730 -19.23570 -18.73032 -18.18183 -18.02860 -17.42070 -16.87980 -16.64628 -16.48715 -15.86740 -15.35991 -15.19050 -15.05326 -14.78727 -14.53900 -14.43515 -14.36163 -14.08784 -13.86898 -13.60472 -13.39634 -13.26490 -13.06703 -12.99327 -12.84150 -12.77813 -12.57927 -12.48109 -12.31085 -12.06970 -11.85898 -11.73297 -11.41817 -11.38818 -11.11093 -10.87850 -10.66506 -9.92257 -9.86123 -8.75153 -7.81922 -5.33361 -0.80445 -0.57944 0.50735 0.52559 1.45405 1.46641 1.52268 1.57778 1.82693 2.07550 2.23187 2.51026 2.73710 3.10258 3.30814 3.32914 3.67993 3.72167 3.88706 4.01541 4.14804 4.26118 4.33805 4.40727 4.52192 4.57182 4.65246 4.75999 4.78202 4.81252 4.83876 4.90604 4.94047 4.97064 5.05101 5.07633 5.19693 5.23846 5.38493 5.41744 5.52640 5.63022 5.65682 6.00428 6.16597 6.34039 6.44270 6.75912 7.14485 7.86464 8.33334 9.21673 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021620 B = 0.002092 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.758646 B =13381.248324 C =13696.899872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.148 4.148 3 C 0.225 3.775 4 N -0.474 5.474 5 C 0.417 3.583 6 N -0.511 5.511 7 C 0.228 3.772 8 C 0.598 3.402 9 O -0.546 6.546 10 N -0.582 5.582 11 C 0.085 3.915 12 C 0.125 3.875 13 C -0.133 4.133 14 C 0.153 3.847 15 N -0.622 5.622 16 C 0.176 3.824 17 C -0.259 4.259 18 H 0.075 0.925 19 C -0.060 4.060 20 N -0.942 5.942 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.290 1.290 25 N -0.302 5.302 26 N -0.325 5.325 27 C 0.133 3.867 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.244 0.756 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.030 0.970 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.021 0.979 44 H 0.248 0.752 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.534 16.562 -12.547 38.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C 0.041 3.959 4 N -0.189 5.189 5 C 0.058 3.942 6 N -0.247 5.247 7 C -0.055 4.055 8 C 0.380 3.620 9 O -0.421 6.421 10 N -0.313 5.313 11 C -0.057 4.057 12 C 0.004 3.996 13 C -0.174 4.174 14 C 0.027 3.973 15 N -0.345 5.345 16 C 0.031 3.969 17 C -0.389 4.389 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.589 5.589 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.217 1.217 25 N -0.138 5.138 26 N -0.105 5.105 27 C -0.001 4.001 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.260 0.740 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.027 0.973 42 H 0.030 0.970 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -31.330 15.930 -12.528 37.314 hybrid contribution 0.187 -0.790 1.043 1.322 sum -31.144 15.140 -11.485 36.484 Atomic orbital electron populations 1.20868 0.83325 1.06242 1.05100 1.21247 1.01348 0.90404 1.02466 1.24698 0.86661 1.01478 0.83092 1.68246 1.10899 1.20920 1.18844 1.23118 0.89526 0.83909 0.97656 1.71055 1.11888 1.12845 1.28921 1.23886 0.94524 0.88403 0.98678 1.16680 0.81734 0.85340 0.78197 1.90824 1.86268 1.14106 1.50930 1.47802 1.04888 1.10962 1.67649 1.22174 1.03756 0.76940 1.02801 1.21672 0.81834 0.98924 0.97216 1.22333 0.98355 0.99930 0.96814 1.20801 0.93381 0.97150 0.85982 1.44158 1.61314 1.13675 1.15343 1.20502 0.94426 0.86036 0.95931 1.19573 1.17399 0.89956 1.11996 0.90773 1.25915 0.98825 0.97481 1.03228 1.70248 1.40031 1.12847 1.35768 0.85135 0.77462 0.78797 0.78659 1.18694 1.22090 1.21663 1.78785 0.95793 1.08853 1.30373 1.49044 1.08248 1.07731 1.45510 1.22919 0.77551 1.04302 0.95370 0.88428 0.87276 0.89384 0.73968 0.90639 0.90415 0.89314 0.90285 0.86493 0.92636 0.95087 0.93699 0.92208 0.97307 0.97036 0.95999 0.94323 0.77403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.58 10.03 71.24 0.71 1.29 16 2 C -0.15 -0.43 5.87 -19.99 -0.12 -0.55 16 3 C 0.22 1.14 10.96 85.25 0.93 2.07 16 4 N -0.47 -8.23 10.48 -197.54 -2.07 -10.30 16 5 C 0.42 10.33 8.99 261.57 2.35 12.68 16 6 N -0.51 -15.14 7.90 -192.61 -1.52 -16.67 16 7 C 0.23 7.58 7.56 137.39 1.04 8.62 16 8 C 0.60 21.46 7.68 86.87 0.67 22.13 16 9 O -0.55 -23.12 16.71 -3.79 -0.06 -23.19 16 10 N -0.58 -17.83 2.87 -849.86 -2.44 -20.27 16 11 C 0.08 2.09 9.27 127.77 1.18 3.28 16 12 C 0.13 3.77 5.34 86.38 0.46 4.24 16 13 C -0.13 -5.05 5.86 30.59 0.18 -4.87 16 14 C 0.15 6.54 5.64 86.38 0.49 7.03 16 15 N -0.62 -33.46 2.92 -726.95 -2.12 -35.58 16 16 C 0.18 9.63 8.99 127.77 1.15 10.78 16 17 C -0.26 -14.81 9.64 84.03 0.81 -14.00 16 18 H 0.07 4.04 7.86 -2.91 -0.02 4.02 16 19 C -0.06 -3.51 5.10 84.86 0.43 -3.07 16 20 N -0.94 -58.55 10.81 21.65 0.23 -58.32 16 21 Si 0.97 46.63 29.57 68.60 2.03 48.66 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 N -0.30 -9.62 12.78 -52.60 -0.67 -10.29 16 26 N -0.33 -7.45 3.91 -197.58 -0.77 -8.22 16 27 C 0.13 1.40 10.97 83.43 0.92 2.31 16 28 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.11 -1.07 8.10 -2.39 -0.02 -1.09 16 30 H 0.09 -0.58 8.09 -2.39 -0.02 -0.60 16 31 H 0.24 -1.45 8.06 -2.91 -0.02 -1.48 16 32 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 33 H 0.08 2.11 5.89 -2.38 -0.01 2.09 16 34 H 0.09 1.90 8.03 -2.38 -0.02 1.88 16 35 H 0.08 2.49 7.50 -2.39 -0.02 2.47 16 36 H 0.12 2.76 8.07 -2.39 -0.02 2.74 16 37 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.04 1.84 8.07 -2.39 -0.02 1.82 16 40 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 41 H 0.01 0.51 7.31 -2.39 -0.02 0.49 16 42 H 0.01 0.64 7.44 -2.38 -0.02 0.62 16 43 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16 44 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -88.89 380.59 4.81 -84.09 By element: Atomic # 1 Polarization: -2.85 SS G_CDS: 1.00 Total: -1.85 kcal Atomic # 6 Polarization: 40.73 SS G_CDS: 11.21 Total: 51.94 kcal Atomic # 7 Polarization: -150.28 SS G_CDS: -9.37 Total: -159.65 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -88.89 4.81 -84.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755038864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.135 kcal (2) G-P(sol) polarization free energy of solvation -88.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds