Wall clock time and date at job start Tue Mar 31 2020 18:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00340 * 359.97438 * 9 8 7 11 11 C 1.47883 * 119.99852 * 179.97438 * 9 8 7 12 12 C 1.39450 * 121.11455 * 359.71233 * 11 9 8 13 13 C 1.38618 * 119.37450 * 179.73773 * 12 11 9 14 14 N 1.31584 * 121.63281 * 0.58066 * 13 12 11 15 15 C 1.32209 * 121.86984 * 359.69484 * 14 13 12 16 16 N 1.37209 * 134.67350 * 179.97438 * 15 14 13 17 17 H 0.96996 * 125.87106 * 359.97438 * 16 15 14 18 18 N 1.28780 * 108.26230 * 180.02562 * 16 15 14 19 19 N 1.28692 * 111.75579 * 0.02562 * 18 16 15 20 20 C 1.34393 * 109.15358 * 359.97438 * 19 18 16 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.08003 * 120.31148 * 0.02562 * 12 11 9 43 43 H 1.07999 * 119.18179 * 180.27875 * 13 12 11 44 44 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3102 -4.6048 4.5675 11 6 1.1951 -6.4235 3.6137 12 6 0.4736 -6.9327 2.5344 13 6 0.0335 -8.2467 2.5700 14 7 0.2696 -9.0259 3.6037 15 6 0.9428 -8.6005 4.6591 16 7 1.3308 -9.1654 5.8478 17 1 1.1483 -10.0749 6.1311 18 7 1.9781 -8.2803 6.5230 19 7 2.0597 -7.1629 5.8898 20 6 1.4332 -7.2798 4.7066 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2359 -0.6835 1.2730 26 14 6.5130 1.8124 2.4451 27 1 6.7549 1.6054 3.8956 28 1 7.8133 1.9462 1.7406 29 1 5.7137 3.0484 2.2480 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 0.2638 -6.3106 1.6768 43 1 -0.5210 -8.6392 1.7304 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755550065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:57 Heat of formation + Delta-G solvation = 98.324727 kcal Electronic energy + Delta-G solvation = -27825.512007 eV Core-core repulsion = 23880.644845 eV Total energy + Delta-G solvation = -3944.867162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.72775 -40.10606 -38.87451 -37.46279 -34.84025 -34.49584 -33.04230 -32.51115 -31.19458 -30.96540 -29.44356 -26.58059 -26.02012 -25.04415 -24.23798 -23.47649 -22.75212 -21.25328 -21.10388 -19.35623 -19.00731 -18.81355 -17.74182 -17.09395 -16.93470 -16.02922 -15.61381 -15.42004 -15.10402 -14.88724 -14.15543 -13.96832 -13.88736 -13.62867 -13.51027 -13.28101 -13.09268 -12.74736 -12.62258 -12.01401 -11.97462 -11.88536 -11.66456 -11.62648 -11.22193 -10.89767 -10.75234 -10.61854 -10.49855 -10.39307 -10.24547 -10.03144 -9.94248 -9.68843 -9.67430 -9.44692 -9.43600 -8.90931 -8.79798 -6.91447 -5.72786 -3.00358 -0.29886 0.47035 1.78771 1.89087 2.65173 2.93190 3.39269 3.43173 3.47543 3.52848 3.54313 3.86064 4.06295 4.17640 4.37366 4.63072 4.73511 5.05843 5.10048 5.20477 5.32265 5.35222 5.47619 5.55426 5.69219 5.71233 5.75418 5.89821 5.99516 6.16296 6.21498 6.22398 6.26482 6.37042 6.39485 6.51339 6.64178 6.68445 6.70842 6.82818 7.06839 7.12476 7.34138 7.48108 7.75657 7.85179 8.19656 8.45385 9.57113 10.13245 10.47837 11.49669 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002673 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.344792 B =10473.235168 C =11992.550749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.122 3.878 8 N -0.718 5.718 9 C 0.543 3.457 10 O -0.493 6.493 11 C -0.001 4.001 12 C -0.145 4.145 13 C 0.162 3.838 14 N -0.461 5.461 15 C 0.214 3.786 16 N -0.407 5.407 17 H 0.457 0.543 18 N 0.002 4.998 19 N -0.205 5.205 20 C 0.002 3.998 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.072 0.928 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.901 3.099 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.395 0.605 42 H 0.159 0.841 43 H 0.183 0.817 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.687 -16.778 -1.040 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.175 4.175 7 C 0.000 4.000 8 N -0.370 5.370 9 C 0.327 3.673 10 O -0.366 6.366 11 C -0.017 4.017 12 C -0.168 4.168 13 C -0.010 4.010 14 N -0.175 5.175 15 C -0.030 4.030 16 N -0.137 5.137 17 H 0.305 0.695 18 N 0.019 4.981 19 N -0.081 5.081 20 C -0.127 4.127 21 N -0.362 5.362 22 C -0.363 4.363 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.732 3.268 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.230 0.770 42 H 0.177 0.823 43 H 0.200 0.800 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.606 -16.759 1.168 23.622 hybrid contribution 0.112 0.285 -0.952 1.000 sum -16.494 -16.475 0.216 23.313 Atomic orbital electron populations 1.21937 0.97161 1.00592 1.00766 1.21775 0.93244 0.97755 1.00463 1.21831 1.04305 0.94839 0.98816 1.20181 0.86066 0.90976 0.95300 0.93257 1.22145 1.00539 0.98367 0.96427 1.21544 1.01541 0.78488 0.98450 1.45997 1.57510 1.14057 1.19480 1.17861 0.81312 0.84294 0.83861 1.90924 1.37741 1.74347 1.33605 1.19827 0.96091 0.94327 0.91500 1.22421 0.98186 0.97626 0.98606 1.22839 0.94701 0.89340 0.94159 1.66315 1.13728 1.38387 0.99092 1.19868 1.01212 0.91055 0.90827 1.44723 1.41734 1.15570 1.11655 0.69467 1.78298 1.07953 0.93682 1.18169 1.75636 1.16575 1.12364 1.03527 1.20159 1.02647 0.93946 0.95971 1.42439 0.98885 1.21102 1.73767 1.19179 0.88774 0.96264 1.32100 0.91038 1.24705 0.96502 0.97701 1.01935 1.69645 1.06810 1.29873 1.51624 0.86287 0.79560 0.82269 0.78687 1.21739 1.21949 1.20797 0.93277 0.93847 0.93218 0.92197 0.89465 0.95246 0.94124 0.91438 0.91533 0.89337 0.91449 0.77044 0.82333 0.80018 0.78306 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.85 37.16 0.33 -1.55 16 2 C -0.11 -1.80 2.69 -90.62 -0.24 -2.04 16 3 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 4 C 0.19 3.30 2.02 -67.93 -0.14 3.16 16 5 H 0.05 0.93 8.08 -51.93 -0.42 0.52 16 6 C -0.14 -1.89 4.65 -26.73 -0.12 -2.01 16 7 C 0.12 1.90 5.56 -4.04 -0.02 1.88 16 8 N -0.72 -8.84 5.51 -61.24 -0.34 -9.18 16 9 C 0.54 8.16 7.79 -12.31 -0.10 8.06 16 10 O -0.49 -9.98 16.27 5.33 0.09 -9.89 16 11 C 0.00 -0.01 5.92 -104.50 -0.62 -0.63 16 12 C -0.14 -0.99 9.61 -38.99 -0.37 -1.37 16 13 C 0.16 0.97 11.14 -17.52 -0.20 0.78 16 14 N -0.46 -4.08 10.35 -12.39 -0.13 -4.21 16 15 C 0.21 2.32 8.56 -156.21 -1.34 0.98 16 16 N -0.41 -3.74 7.06 31.11 0.22 -3.52 16 17 H 0.46 2.16 8.96 -190.26 -1.71 0.45 16 18 N 0.00 0.02 13.29 60.35 0.80 0.83 16 19 N -0.21 -3.26 11.92 32.23 0.38 -2.87 16 20 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 21 N -0.72 -16.57 4.45 -53.42 -0.24 -16.81 16 22 C -0.23 -6.07 7.57 -15.06 -0.11 -6.19 16 23 H 0.07 1.84 7.40 -52.49 -0.39 1.45 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 26 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.54 6.32 -51.93 -0.33 0.22 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.87 6.01 -51.93 -0.31 1.56 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.75 6.17 -51.93 -0.32 0.43 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.76 7.75 -51.93 -0.40 1.35 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.40 3.18 6.62 -40.82 -0.27 2.91 16 42 H 0.16 0.49 6.53 -52.48 -0.34 0.15 16 43 H 0.18 0.30 8.06 -52.49 -0.42 -0.13 16 44 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -35.91 372.90 -8.53 -44.44 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.32 Total: 7.32 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.31 Total: -2.14 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 1.43 Total: -62.67 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.91 -8.53 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755550065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.760 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds