Wall clock time and date at job start Tue Mar 31 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00340 * 359.97438 * 9 8 7 11 11 C 1.47883 * 119.99852 * 179.97438 * 9 8 7 12 12 C 1.39450 * 121.11455 * 359.71233 * 11 9 8 13 13 C 1.38618 * 119.37450 * 179.73773 * 12 11 9 14 14 N 1.31584 * 121.63281 * 0.58066 * 13 12 11 15 15 C 1.32209 * 121.86984 * 359.69484 * 14 13 12 16 16 N 1.37209 * 134.67350 * 179.97438 * 15 14 13 17 17 H 0.96996 * 125.87106 * 359.97438 * 16 15 14 18 18 N 1.28780 * 108.26230 * 180.02562 * 16 15 14 19 19 N 1.28692 * 111.75579 * 0.02562 * 18 16 15 20 20 C 1.34393 * 109.15358 * 359.97438 * 19 18 16 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.08003 * 120.31148 * 0.02562 * 12 11 9 43 43 H 1.07999 * 119.18179 * 180.27875 * 13 12 11 44 44 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3102 -4.6048 4.5675 11 6 1.1951 -6.4235 3.6137 12 6 0.4736 -6.9327 2.5344 13 6 0.0335 -8.2467 2.5700 14 7 0.2696 -9.0259 3.6037 15 6 0.9428 -8.6005 4.6591 16 7 1.3308 -9.1654 5.8478 17 1 1.1483 -10.0749 6.1311 18 7 1.9781 -8.2803 6.5230 19 7 2.0597 -7.1629 5.8898 20 6 1.4332 -7.2798 4.7066 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2359 -0.6835 1.2730 26 14 6.5130 1.8124 2.4451 27 1 6.7549 1.6054 3.8956 28 1 7.8133 1.9462 1.7406 29 1 5.7137 3.0484 2.2480 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 0.2638 -6.3106 1.6768 43 1 -0.5210 -8.6392 1.7304 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755550065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:54 Heat of formation + Delta-G solvation = 69.342545 kcal Electronic energy + Delta-G solvation = -27826.768769 eV Core-core repulsion = 23880.644845 eV Total energy + Delta-G solvation = -3946.123924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -44.54710 -41.11001 -39.76160 -38.89204 -36.11255 -35.35360 -34.87480 -33.43505 -32.42974 -31.90758 -31.03959 -27.80698 -27.18968 -26.30466 -24.98053 -24.88731 -24.02320 -22.48676 -22.18464 -20.66246 -20.01874 -19.63375 -19.08424 -18.53120 -17.77487 -17.03396 -16.92378 -16.54756 -16.39450 -15.76960 -15.68727 -15.27065 -15.25887 -15.05014 -14.54079 -14.41146 -14.22609 -13.93899 -13.51443 -13.46843 -13.18482 -12.87698 -12.86853 -12.79069 -12.70059 -12.61501 -12.42652 -12.16130 -11.98521 -11.86265 -11.70464 -11.47761 -11.27405 -11.13154 -10.77846 -10.62734 -10.42845 -10.31278 -10.05408 -8.86904 -7.86713 -5.10173 -1.08031 -0.19883 0.96785 1.11902 1.46038 1.48563 1.54549 1.73723 1.90250 2.54733 2.60636 2.69825 3.14470 3.31700 3.40970 3.47174 3.73631 3.95387 3.99345 4.14928 4.18959 4.32441 4.34822 4.37607 4.47295 4.58960 4.73160 4.74509 4.86184 4.87960 5.02120 5.09252 5.18470 5.20641 5.30136 5.31199 5.39752 5.46296 5.50893 5.61017 5.64934 5.76774 5.85411 6.36641 6.41597 6.48987 6.99351 7.16810 7.43433 8.22035 8.42525 9.36965 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002673 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.344792 B =10473.235168 C =11992.550749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.177 3.823 5 H 0.037 0.963 6 C -0.119 4.119 7 C 0.133 3.867 8 N -0.695 5.695 9 C 0.541 3.459 10 O -0.562 6.562 11 C -0.040 4.040 12 C -0.103 4.103 13 C 0.179 3.821 14 N -0.462 5.462 15 C 0.209 3.791 16 N -0.382 5.382 17 H 0.474 0.526 18 N -0.015 5.015 19 N -0.267 5.267 20 C -0.030 4.030 21 N -0.730 5.730 22 C -0.208 4.208 23 H 0.073 0.927 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.953 3.047 27 H -0.298 1.298 28 H -0.300 1.300 29 H -0.268 1.268 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.051 0.949 41 H 0.420 0.580 42 H 0.206 0.794 43 H 0.242 0.758 44 H 0.372 0.628 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.915 -18.236 -3.978 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.197 4.197 4 C 0.068 3.932 5 H 0.055 0.945 6 C -0.157 4.157 7 C 0.009 3.991 8 N -0.348 5.348 9 C 0.327 3.673 10 O -0.440 6.440 11 C -0.056 4.056 12 C -0.126 4.126 13 C 0.006 3.994 14 N -0.176 5.176 15 C -0.034 4.034 16 N -0.115 5.115 17 H 0.326 0.674 18 N 0.003 4.997 19 N -0.142 5.142 20 C -0.160 4.160 21 N -0.370 5.370 22 C -0.341 4.341 23 H 0.091 0.909 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.784 3.216 27 H -0.226 1.226 28 H -0.227 1.227 29 H -0.193 1.193 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.260 0.740 42 H 0.223 0.777 43 H 0.258 0.742 44 H 0.204 0.796 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.916 -18.231 -1.778 27.803 hybrid contribution 1.221 0.670 -0.165 1.403 sum -19.695 -17.561 -1.943 26.458 Atomic orbital electron populations 1.21859 0.93521 1.02692 1.01568 1.21629 0.96154 0.95961 0.98813 1.21778 1.01505 0.96643 0.99795 1.20476 0.83032 0.93945 0.95745 0.94486 1.22019 1.03049 0.95249 0.95386 1.21173 0.98406 0.80388 0.99141 1.45653 1.56874 1.12509 1.19814 1.18435 0.80071 0.85673 0.83123 1.90886 1.40947 1.75938 1.36223 1.19713 0.99713 0.92594 0.93562 1.23036 0.93854 0.98335 0.97388 1.23936 0.92815 0.88462 0.94221 1.66525 1.13248 1.38809 0.98993 1.19940 1.01747 0.90085 0.91658 1.44709 1.39955 1.15827 1.11022 0.67353 1.78174 1.09021 0.93846 1.18676 1.75545 1.19088 1.13954 1.05572 1.20571 1.03573 0.95876 0.96013 1.42624 1.01293 1.19738 1.73325 1.19468 0.88880 0.96533 1.29179 0.90868 1.25340 0.97701 1.00003 1.04087 1.69782 1.06177 1.31751 1.54468 0.85419 0.78312 0.80534 0.77322 1.22571 1.22664 1.19311 0.93121 0.92486 0.90478 0.92503 0.93687 0.93145 0.94282 0.86941 0.90346 0.94498 0.93052 0.74024 0.77672 0.74215 0.79616 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.85 71.98 0.64 -2.26 16 2 C -0.10 -3.13 2.69 -10.80 -0.03 -3.16 16 3 C -0.14 -4.83 8.26 71.98 0.59 -4.24 16 4 C 0.18 6.09 2.02 44.99 0.09 6.18 16 5 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 6 C -0.12 -2.98 4.65 30.60 0.14 -2.84 16 7 C 0.13 4.13 5.56 86.38 0.48 4.61 16 8 N -0.69 -16.06 5.51 -465.96 -2.57 -18.63 16 9 C 0.54 16.53 7.79 86.80 0.68 17.21 16 10 O -0.56 -24.57 16.27 -3.83 -0.06 -24.64 16 11 C -0.04 -0.91 5.92 -19.79 -0.12 -1.03 16 12 C -0.10 -0.92 9.61 22.65 0.22 -0.70 16 13 C 0.18 1.12 11.14 84.82 0.94 2.06 16 14 N -0.46 -6.49 10.35 -193.10 -2.00 -8.49 16 15 C 0.21 4.29 8.56 134.17 1.15 5.44 16 16 N -0.38 -7.01 7.06 -55.48 -0.39 -7.40 16 17 H 0.47 4.18 8.96 -219.84 -1.97 2.21 16 18 N -0.01 -0.40 13.29 37.02 0.49 0.10 16 19 N -0.27 -9.14 11.92 -51.94 -0.62 -9.75 16 20 C -0.03 -0.84 6.97 40.06 0.28 -0.56 16 21 N -0.73 -34.25 4.45 -322.93 -1.44 -35.69 16 22 C -0.21 -11.18 7.57 84.04 0.64 -10.54 16 23 H 0.07 3.84 7.40 -2.91 -0.02 3.82 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 25 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 26 Si 0.95 47.52 29.55 68.60 2.03 49.55 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 28 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 29 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.20 6.32 -2.39 -0.02 1.19 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.04 1.93 6.01 -2.39 -0.01 1.91 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.88 6.17 -2.39 -0.01 1.86 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 1.55 7.75 -2.39 -0.02 1.53 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.42 4.95 6.62 -92.71 -0.61 4.33 16 42 H 0.21 -0.24 6.53 -2.91 -0.02 -0.26 16 43 H 0.24 -1.26 8.06 -2.91 -0.02 -1.29 16 44 H 0.37 19.06 7.80 -92.71 -0.72 18.34 16 45 H 0.24 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -89.45 372.90 -0.35 -89.80 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -2.24 Total: 18.82 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.17 Total: 6.05 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -6.24 Total: -139.59 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -89.45 -0.35 -89.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755550065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.145 kcal (2) G-P(sol) polarization free energy of solvation -89.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds