Wall clock time and date at job start Tue Mar 31 2020 18:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47252 * 2 1 4 4 C 1.53007 * 109.46876 * 240.00102 * 2 1 3 5 5 C 1.52999 * 109.47136 * 120.00489 * 2 1 3 6 6 H 1.09003 * 109.46903 * 179.97438 * 5 2 1 7 7 C 1.53006 * 109.46809 * 299.99210 * 5 2 1 8 8 N 1.46500 * 109.47007 * 175.00218 * 7 5 2 9 9 C 1.36939 * 119.99949 * 180.02562 * 8 7 5 10 10 H 1.07990 * 119.99953 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99878 * 179.97438 * 9 8 7 12 12 N 1.31626 * 120.00156 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99953 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46770 * 60.00615 * 13 11 9 15 15 H 1.48498 * 109.47008 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47192 * 300.00623 * 13 11 9 17 17 N 1.46493 * 109.47638 * 59.99350 * 5 2 1 18 18 C 1.34784 * 119.99864 * 84.99998 * 17 5 2 19 19 O 1.21516 * 119.99686 * 359.72908 * 18 17 5 20 20 C 1.48115 * 119.99938 * 179.72800 * 18 17 5 21 21 C 1.39823 * 119.37306 * 180.02562 * 20 18 17 22 22 C 1.36963 * 119.60999 * 179.97438 * 21 20 18 23 23 C 1.39820 * 118.25028 * 0.02562 * 22 21 20 24 24 N 1.34654 * 135.00242 * 180.02562 * 23 22 21 25 25 N 1.28676 * 109.15504 * 179.97438 * 24 23 22 26 26 N 1.28763 * 111.84750 * 359.97438 * 25 24 23 27 27 H 0.97002 * 125.85358 * 180.02562 * 26 25 24 28 28 C 1.37248 * 108.28608 * 0.02562 * 26 25 24 29 29 N 1.31950 * 134.71107 * 180.35393 * 28 26 25 30 30 H 1.09003 * 109.46561 * 300.00135 * 1 2 3 31 31 H 1.09004 * 109.47221 * 59.99480 * 1 2 3 32 32 H 1.09003 * 109.47466 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47197 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47176 * 299.99906 * 3 2 1 35 35 H 1.08994 * 109.47345 * 60.00610 * 3 2 1 36 36 H 1.09003 * 109.46912 * 300.00143 * 4 2 1 37 37 H 1.09001 * 109.46845 * 59.99667 * 4 2 1 38 38 H 1.08996 * 109.47219 * 180.02562 * 4 2 1 39 39 H 1.08994 * 109.47199 * 295.00431 * 7 5 2 40 40 H 1.08999 * 109.46831 * 55.00659 * 7 5 2 41 41 H 0.97001 * 119.99996 * 359.97438 * 8 7 5 42 42 H 0.96990 * 120.00071 * 179.97438 * 12 11 9 43 43 H 0.97000 * 120.00740 * 264.72691 * 17 5 2 44 44 H 1.08003 * 120.19478 * 359.96979 * 21 20 18 45 45 H 1.07995 * 120.88058 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 3.1300 -0.7217 1.2489 7 6 1.5301 0.0000 2.4985 8 7 1.9177 -0.7567 3.6916 9 6 1.5683 -0.3010 4.9348 10 1 1.0067 0.6159 5.0356 11 6 1.9351 -1.0182 6.0652 12 7 2.6191 -2.1360 5.9423 13 14 1.4590 -0.3963 7.7611 14 1 -0.0200 -0.3059 7.8580 15 1 1.9666 -1.3356 8.7933 16 1 2.0525 0.9472 7.9803 17 7 1.5516 -2.1025 1.2492 18 6 2.2284 -3.0566 0.5797 19 8 3.2409 -2.7702 -0.0281 20 6 1.7379 -4.4542 0.5847 21 6 2.4505 -5.4336 -0.1138 22 6 2.0016 -6.7276 -0.1120 23 6 0.8331 -7.0217 0.5972 24 7 0.1108 -8.1356 0.8224 25 7 -0.9001 -7.8410 1.5620 26 7 -0.9238 -6.5897 1.8648 27 1 -1.5937 -6.1500 2.4115 28 6 0.1614 -5.9848 1.2815 29 7 0.6353 -4.7537 1.2557 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6765 -0.2074 -2.1393 38 1 3.1299 -0.7217 -1.2492 39 1 1.9647 0.9985 2.5443 40 1 0.4438 0.0782 2.4549 41 1 2.4212 -1.5808 3.6009 42 1 2.8757 -2.6369 6.7322 43 1 0.7434 -2.3312 1.7344 44 1 3.3496 -5.1713 -0.6517 45 1 2.5362 -7.5005 -0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755825829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:47 Heat of formation + Delta-G solvation = 100.860291 kcal Electronic energy + Delta-G solvation = -29113.240171 eV Core-core repulsion = 25168.482959 eV Total energy + Delta-G solvation = -3944.757212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.58845 -40.49409 -38.99063 -37.27131 -34.57883 -34.43464 -33.34790 -32.00746 -31.29097 -30.85820 -27.84723 -27.15589 -26.93804 -25.66120 -24.21200 -23.62706 -22.93907 -21.65030 -20.95082 -19.17627 -18.67178 -18.53264 -17.94920 -17.02395 -16.81104 -15.93118 -15.63517 -15.46420 -14.86449 -14.36852 -14.11795 -13.93578 -13.73887 -13.65058 -13.39674 -13.14518 -13.00931 -12.70339 -12.60172 -12.20761 -12.03945 -11.96108 -11.89474 -11.82818 -11.40750 -11.25328 -11.13388 -10.83211 -10.77804 -10.58115 -10.32771 -10.24440 -9.99131 -9.77239 -9.64867 -9.48531 -9.28966 -8.92430 -8.66184 -6.97996 -5.80766 -3.10500 -0.09254 0.74810 1.88005 1.91869 2.71441 3.16315 3.39838 3.44726 3.45702 3.51304 3.61010 4.00650 4.14674 4.52662 4.54120 4.64053 4.90466 5.00744 5.11351 5.12388 5.23104 5.48946 5.50855 5.53810 5.62087 5.68649 5.76216 5.86535 5.88672 6.00346 6.02623 6.05639 6.09705 6.13192 6.27584 6.34709 6.42053 6.42985 6.46031 6.59129 6.68480 6.87321 7.15869 7.64370 7.75977 7.87361 8.32826 8.36971 9.48607 10.04704 10.39677 11.41325 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.004539 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.653668 B = 6167.238338 C = 8614.096791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.131 4.131 5 C 0.146 3.854 6 H 0.090 0.910 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.285 1.285 17 N -0.681 5.681 18 C 0.570 3.430 19 O -0.526 6.526 20 C 0.157 3.843 21 C -0.121 4.121 22 C -0.005 4.005 23 C -0.026 4.026 24 N -0.242 5.242 25 N 0.008 4.992 26 N -0.400 5.400 27 H 0.460 0.540 28 C 0.219 3.781 29 N -0.437 5.437 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.414 0.586 44 H 0.167 0.833 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 -4.213 -15.621 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.188 4.188 5 C 0.041 3.959 6 H 0.108 0.892 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.331 5.331 18 C 0.354 3.646 19 O -0.402 6.402 20 C 0.002 3.998 21 C -0.145 4.145 22 C -0.036 4.036 23 C -0.154 4.154 24 N -0.119 5.119 25 N 0.024 4.976 26 N -0.132 5.132 27 H 0.309 0.691 28 C -0.025 4.025 29 N -0.153 5.153 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.251 0.749 44 H 0.184 0.816 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.247 -4.664 -15.292 16.827 hybrid contribution -0.119 0.501 1.289 1.388 sum -5.366 -4.163 -14.004 15.564 Atomic orbital electron populations 1.21925 0.94662 1.01691 1.01692 1.20904 0.95893 0.95728 0.95242 1.21884 1.01248 0.94840 1.01858 1.21903 1.01724 0.99544 0.95625 1.21411 1.00014 0.79678 0.94752 0.89151 1.21103 0.97479 0.94738 0.85298 1.42346 1.67003 1.27737 1.00491 1.19146 1.29060 1.05511 0.83586 0.91216 1.24735 1.00835 0.97339 0.97788 1.69658 1.43148 1.16485 1.28590 0.86288 0.77935 0.77781 0.84271 1.21316 1.21749 1.21218 1.45829 1.28985 1.08101 1.50178 1.17562 0.83805 0.83194 0.80085 1.90797 1.24303 1.81130 1.43978 1.21374 0.89758 0.95680 0.93022 1.21751 1.01604 0.91626 0.99538 1.20488 0.91415 0.96919 0.94761 1.20674 0.99651 0.91342 1.03702 1.75392 1.01134 1.22831 1.12499 1.78086 1.15564 0.94820 1.09103 1.44689 1.21592 1.06549 1.40325 0.69118 1.19787 0.91769 0.91938 0.99032 1.66311 1.13077 1.17996 1.17932 0.91851 0.93137 0.92891 0.92457 0.92835 0.91852 0.93082 0.93839 0.91788 0.94497 0.95326 0.78065 0.93491 0.74924 0.81566 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.97 37.16 0.30 -1.41 16 2 C -0.08 -0.99 0.62 -154.51 -0.10 -1.08 16 3 C -0.14 -1.67 8.12 37.15 0.30 -1.37 16 4 C -0.13 -1.68 6.99 37.16 0.26 -1.42 16 5 C 0.15 2.32 1.69 -67.93 -0.11 2.20 16 6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 7 C 0.14 2.63 5.10 -4.04 -0.02 2.61 16 8 N -0.73 -17.60 5.43 -59.91 -0.33 -17.93 16 9 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 13 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 N -0.68 -10.66 3.63 -54.66 -0.20 -10.86 16 18 C 0.57 8.81 6.17 -12.20 -0.08 8.73 16 19 O -0.53 -8.74 13.38 5.35 0.07 -8.67 16 20 C 0.16 2.18 6.74 -82.93 -0.56 1.62 16 21 C -0.12 -1.36 9.55 -39.45 -0.38 -1.74 16 22 C -0.01 -0.05 10.16 -39.45 -0.40 -0.45 16 23 C -0.03 -0.33 7.38 -84.90 -0.63 -0.96 16 24 N -0.24 -3.22 12.43 32.12 0.40 -2.83 16 25 N 0.01 0.09 13.28 60.35 0.80 0.90 16 26 N -0.40 -4.45 7.06 31.13 0.22 -4.23 16 27 H 0.46 3.63 8.96 -190.26 -1.71 1.93 16 28 C 0.22 2.91 8.56 -156.29 -1.34 1.58 16 29 N -0.44 -6.20 9.54 -8.91 -0.08 -6.29 16 30 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.65 7.60 -51.93 -0.39 0.25 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 36 H 0.05 0.70 5.77 -51.93 -0.30 0.40 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.89 7.52 -51.93 -0.39 0.50 16 39 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 40 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 41 H 0.39 10.01 7.33 -40.82 -0.30 9.71 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.41 6.66 7.91 -40.82 -0.32 6.34 16 44 H 0.17 1.58 7.61 -52.48 -0.40 1.18 16 45 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -32.01 366.04 -8.10 -40.10 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.20 Total: 13.06 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.00 Total: 1.23 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: 1.54 Total: -68.22 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.07 Total: -8.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.01 -8.10 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755825829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.965 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds