Wall clock time and date at job start Tue Mar 31 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47252 * 2 1 4 4 C 1.53007 * 109.46876 * 240.00102 * 2 1 3 5 5 C 1.52999 * 109.47136 * 120.00489 * 2 1 3 6 6 H 1.09003 * 109.46903 * 179.97438 * 5 2 1 7 7 C 1.53006 * 109.46809 * 299.99210 * 5 2 1 8 8 N 1.46500 * 109.47007 * 175.00218 * 7 5 2 9 9 C 1.36939 * 119.99949 * 180.02562 * 8 7 5 10 10 H 1.07990 * 119.99953 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99878 * 179.97438 * 9 8 7 12 12 N 1.31626 * 120.00156 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99953 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46770 * 60.00615 * 13 11 9 15 15 H 1.48498 * 109.47008 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47192 * 300.00623 * 13 11 9 17 17 N 1.46493 * 109.47638 * 59.99350 * 5 2 1 18 18 C 1.34784 * 119.99864 * 84.99998 * 17 5 2 19 19 O 1.21516 * 119.99686 * 359.72908 * 18 17 5 20 20 C 1.48115 * 119.99938 * 179.72800 * 18 17 5 21 21 C 1.39823 * 119.37306 * 180.02562 * 20 18 17 22 22 C 1.36963 * 119.60999 * 179.97438 * 21 20 18 23 23 C 1.39820 * 118.25028 * 0.02562 * 22 21 20 24 24 N 1.34654 * 135.00242 * 180.02562 * 23 22 21 25 25 N 1.28676 * 109.15504 * 179.97438 * 24 23 22 26 26 N 1.28763 * 111.84750 * 359.97438 * 25 24 23 27 27 H 0.97002 * 125.85358 * 180.02562 * 26 25 24 28 28 C 1.37248 * 108.28608 * 0.02562 * 26 25 24 29 29 N 1.31950 * 134.71107 * 180.35393 * 28 26 25 30 30 H 1.09003 * 109.46561 * 300.00135 * 1 2 3 31 31 H 1.09004 * 109.47221 * 59.99480 * 1 2 3 32 32 H 1.09003 * 109.47466 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47197 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47176 * 299.99906 * 3 2 1 35 35 H 1.08994 * 109.47345 * 60.00610 * 3 2 1 36 36 H 1.09003 * 109.46912 * 300.00143 * 4 2 1 37 37 H 1.09001 * 109.46845 * 59.99667 * 4 2 1 38 38 H 1.08996 * 109.47219 * 180.02562 * 4 2 1 39 39 H 1.08994 * 109.47199 * 295.00431 * 7 5 2 40 40 H 1.08999 * 109.46831 * 55.00659 * 7 5 2 41 41 H 0.97001 * 119.99996 * 359.97438 * 8 7 5 42 42 H 0.96990 * 120.00071 * 179.97438 * 12 11 9 43 43 H 0.97000 * 120.00740 * 264.72691 * 17 5 2 44 44 H 1.08003 * 120.19478 * 359.96979 * 21 20 18 45 45 H 1.07995 * 120.88058 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 3.1300 -0.7217 1.2489 7 6 1.5301 0.0000 2.4985 8 7 1.9177 -0.7567 3.6916 9 6 1.5683 -0.3010 4.9348 10 1 1.0067 0.6159 5.0356 11 6 1.9351 -1.0182 6.0652 12 7 2.6191 -2.1360 5.9423 13 14 1.4590 -0.3963 7.7611 14 1 -0.0200 -0.3059 7.8580 15 1 1.9666 -1.3356 8.7933 16 1 2.0525 0.9472 7.9803 17 7 1.5516 -2.1025 1.2492 18 6 2.2284 -3.0566 0.5797 19 8 3.2409 -2.7702 -0.0281 20 6 1.7379 -4.4542 0.5847 21 6 2.4505 -5.4336 -0.1138 22 6 2.0016 -6.7276 -0.1120 23 6 0.8331 -7.0217 0.5972 24 7 0.1108 -8.1356 0.8224 25 7 -0.9001 -7.8410 1.5620 26 7 -0.9238 -6.5897 1.8648 27 1 -1.5937 -6.1500 2.4115 28 6 0.1614 -5.9848 1.2815 29 7 0.6353 -4.7537 1.2557 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6765 -0.2074 -2.1393 38 1 3.1299 -0.7217 -1.2492 39 1 1.9647 0.9985 2.5443 40 1 0.4438 0.0782 2.4549 41 1 2.4212 -1.5808 3.6009 42 1 2.8757 -2.6369 6.7322 43 1 0.7434 -2.3312 1.7344 44 1 3.3496 -5.1713 -0.6517 45 1 2.5362 -7.5005 -0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755825829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:46 Heat of formation + Delta-G solvation = 78.303061 kcal Electronic energy + Delta-G solvation = -29114.218325 eV Core-core repulsion = 25168.482959 eV Total energy + Delta-G solvation = -3945.735367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.54772 -41.65907 -40.05256 -38.48175 -36.18799 -35.51169 -34.64835 -33.15298 -32.80416 -32.06268 -29.38015 -28.14251 -27.97372 -26.81309 -25.63588 -24.95433 -23.91275 -23.16821 -22.10983 -20.18674 -19.78200 -19.67231 -19.25800 -18.65666 -17.79055 -17.20871 -16.93713 -16.51357 -16.47237 -15.70636 -15.43841 -15.28534 -14.85600 -14.75806 -14.59361 -14.46474 -14.25533 -13.98253 -13.66181 -13.56240 -13.06340 -13.02315 -12.98410 -12.90514 -12.83018 -12.71277 -12.51199 -12.35455 -12.22834 -12.03362 -11.76436 -11.64620 -11.42497 -11.27849 -10.92136 -10.71169 -10.43859 -10.26773 -9.90264 -8.98520 -7.93933 -5.22759 -1.07892 -0.17991 0.87501 0.99563 1.46990 1.49303 1.55225 1.63243 2.02133 2.55084 2.55350 2.57149 3.02864 3.19625 3.40406 3.54922 3.65693 3.69570 3.86629 4.06336 4.21721 4.24433 4.26753 4.35301 4.46785 4.65151 4.70744 4.73536 4.85796 4.88179 4.91498 4.99660 5.09897 5.11145 5.16288 5.16654 5.26925 5.33483 5.42976 5.49913 5.51121 5.58032 5.63608 6.14350 6.26322 6.52957 6.89885 7.09637 7.33984 8.08584 8.31716 9.28796 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.004539 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.653668 B = 6167.238338 C = 8614.096791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.123 4.123 5 C 0.155 3.845 6 H 0.067 0.933 7 C 0.143 3.857 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.079 0.921 11 C -0.072 4.072 12 N -0.968 5.968 13 Si 0.970 3.030 14 H -0.277 1.277 15 H -0.300 1.300 16 H -0.279 1.279 17 N -0.683 5.683 18 C 0.569 3.431 19 O -0.542 6.542 20 C 0.139 3.861 21 C -0.117 4.117 22 C 0.011 3.989 23 C -0.035 4.035 24 N -0.256 5.256 25 N 0.007 4.993 26 N -0.387 5.387 27 H 0.471 0.529 28 C 0.202 3.798 29 N -0.454 5.454 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.373 0.627 42 H 0.248 0.752 43 H 0.411 0.589 44 H 0.185 0.815 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -3.741 -16.783 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.180 4.180 5 C 0.050 3.950 6 H 0.085 0.915 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.372 4.372 10 H 0.097 0.903 11 C -0.265 4.265 12 N -0.619 5.619 13 Si 0.799 3.201 14 H -0.203 1.203 15 H -0.227 1.227 16 H -0.205 1.205 17 N -0.332 5.332 18 C 0.353 3.647 19 O -0.419 6.419 20 C -0.015 4.015 21 C -0.141 4.141 22 C -0.019 4.019 23 C -0.163 4.163 24 N -0.133 5.133 25 N 0.024 4.976 26 N -0.121 5.121 27 H 0.323 0.677 28 C -0.043 4.043 29 N -0.171 5.171 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.247 0.753 44 H 0.202 0.798 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.027 -4.145 -16.478 18.028 hybrid contribution 0.086 0.370 1.590 1.635 sum -5.940 -3.775 -14.888 16.468 Atomic orbital electron populations 1.21881 0.93547 1.01621 1.02460 1.20868 0.96669 0.96016 0.93611 1.21880 1.01003 0.94020 1.02766 1.21807 1.00746 0.99193 0.96259 1.21260 0.98569 0.80129 0.95022 0.91505 1.21243 0.97998 0.94531 0.84526 1.42526 1.66827 1.27729 1.01439 1.19576 1.27627 1.05246 0.84738 0.90327 1.25503 1.01754 0.97853 1.01368 1.69828 1.45198 1.18006 1.28892 0.85266 0.77946 0.77071 0.79793 1.20260 1.22699 1.20477 1.45811 1.28880 1.08177 1.50336 1.17800 0.83464 0.83828 0.79562 1.90779 1.24872 1.81596 1.44645 1.21306 0.90522 0.95334 0.94330 1.21933 1.01779 0.91376 0.99009 1.20910 0.90283 0.97279 0.93445 1.21049 1.00356 0.90929 1.03922 1.75375 1.01566 1.23180 1.13147 1.78032 1.15457 0.95163 1.08968 1.44723 1.21376 1.06132 1.39880 0.67725 1.19969 0.92558 0.91962 0.99836 1.66201 1.13606 1.18690 1.18572 0.92291 0.91102 0.93410 0.92935 0.90633 0.92216 0.94089 0.91775 0.93202 0.94030 0.94147 0.79528 0.94319 0.75258 0.79797 0.78561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 7.97 71.98 0.57 -2.48 16 2 C -0.07 -1.73 0.62 -52.18 -0.03 -1.76 16 3 C -0.14 -3.06 8.12 71.98 0.58 -2.48 16 4 C -0.12 -3.00 6.99 71.98 0.50 -2.50 16 5 C 0.15 4.93 1.69 44.99 0.08 5.01 16 6 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 7 C 0.14 5.29 5.10 86.38 0.44 5.73 16 8 N -0.74 -36.11 5.43 -343.45 -1.87 -37.98 16 9 C -0.24 -12.92 9.99 84.03 0.84 -12.08 16 10 H 0.08 4.01 7.83 -2.92 -0.02 3.99 16 11 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 12 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 13 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 N -0.68 -21.68 3.63 -445.15 -1.62 -23.29 16 18 C 0.57 17.78 6.17 86.86 0.54 18.32 16 19 O -0.54 -18.14 13.38 -3.77 -0.05 -18.19 16 20 C 0.14 3.85 6.74 42.05 0.28 4.13 16 21 C -0.12 -2.48 9.55 22.35 0.21 -2.26 16 22 C 0.01 0.21 10.16 22.35 0.23 0.44 16 23 C -0.03 -0.85 7.38 39.83 0.29 -0.56 16 24 N -0.26 -6.56 12.43 -52.29 -0.65 -7.21 16 25 N 0.01 0.17 13.28 37.02 0.49 0.67 16 26 N -0.39 -8.46 7.06 -55.42 -0.39 -8.85 16 27 H 0.47 7.32 8.96 -219.84 -1.97 5.34 16 28 C 0.20 5.28 8.56 134.31 1.15 6.43 16 29 N -0.45 -12.95 9.54 -182.09 -1.74 -14.69 16 30 H 0.06 1.35 6.32 -2.39 -0.02 1.34 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.05 1.11 7.60 -2.39 -0.02 1.09 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.35 6.54 -2.39 -0.02 1.34 16 36 H 0.04 1.08 5.77 -2.39 -0.01 1.07 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.36 7.52 -2.39 -0.02 1.34 16 39 H 0.04 1.53 6.71 -2.39 -0.02 1.51 16 40 H 0.04 1.43 6.17 -2.39 -0.01 1.42 16 41 H 0.37 19.88 7.33 -92.71 -0.68 19.20 16 42 H 0.25 14.80 8.31 -92.72 -0.77 14.03 16 43 H 0.41 13.51 7.91 -92.71 -0.73 12.78 16 44 H 0.18 3.17 7.61 -2.91 -0.02 3.15 16 45 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -68.83 366.04 0.34 -68.49 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -2.31 Total: 39.86 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.16 Total: 12.32 kcal Atomic # 7 Polarization: -144.42 SS G_CDS: -5.49 Total: -149.90 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.19 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.83 0.34 -68.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755825829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.793 kcal (2) G-P(sol) polarization free energy of solvation -68.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds