Wall clock time and date at job start Tue Mar 31 2020 18:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46575 * 2 1 4 4 C 1.52998 * 109.47053 * 240.00269 * 2 1 3 5 5 C 1.53001 * 109.47260 * 119.99820 * 2 1 3 6 6 H 1.09001 * 109.47181 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.46941 * 300.00081 * 5 2 1 8 8 N 1.46506 * 109.46670 * 174.99892 * 7 5 2 9 9 C 1.36937 * 119.99655 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00338 * 0.02562 * 9 8 7 11 11 C 1.38821 * 119.99754 * 180.02562 * 9 8 7 12 12 N 1.31611 * 120.00117 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99798 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46925 * 60.00132 * 13 11 9 15 15 H 1.48498 * 109.46902 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47086 * 300.00104 * 13 11 9 17 17 N 1.46497 * 109.47117 * 60.00040 * 5 2 1 18 18 C 1.34784 * 119.99734 * 84.99972 * 17 5 2 19 19 O 1.21520 * 120.00115 * 359.97438 * 18 17 5 20 20 C 1.48123 * 119.99642 * 180.02562 * 18 17 5 21 21 N 1.33462 * 125.32811 * 359.96894 * 20 18 17 22 22 C 1.32504 * 109.75849 * 180.02562 * 21 20 18 23 23 N 1.33982 * 132.34685 * 180.29011 * 22 21 20 24 24 C 1.31266 * 120.87783 * 180.25487 * 23 22 21 25 25 C 1.40163 * 120.35648 * 359.42895 * 24 23 22 26 26 C 1.35683 * 119.27623 * 0.28565 * 25 24 23 27 27 N 1.36173 * 119.02163 * 359.97438 * 26 25 24 28 28 N 1.31991 * 125.31963 * 180.02562 * 20 18 17 29 29 H 1.08998 * 109.46896 * 299.99409 * 1 2 3 30 30 H 1.08995 * 109.47576 * 60.00217 * 1 2 3 31 31 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46789 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47115 * 299.99608 * 3 2 1 34 34 H 1.08995 * 109.47095 * 60.00163 * 3 2 1 35 35 H 1.08998 * 109.47022 * 299.99228 * 4 2 1 36 36 H 1.08995 * 109.47326 * 59.99362 * 4 2 1 37 37 H 1.09001 * 109.46918 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47392 * 294.99620 * 7 5 2 39 39 H 1.09002 * 109.47152 * 55.00652 * 7 5 2 40 40 H 0.96993 * 120.00038 * 0.02562 * 8 7 5 41 41 H 0.96994 * 120.00397 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00610 * 265.00369 * 17 5 2 43 43 H 1.08002 * 119.81996 * 179.73968 * 24 23 22 44 44 H 1.08008 * 120.36641 * 180.30744 * 25 24 23 45 45 H 1.07998 * 120.49020 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 1 3.1301 -0.7208 1.2495 7 6 1.5300 0.0001 2.4985 8 7 1.9177 -0.7566 3.6916 9 6 1.5690 -0.3004 4.9348 10 1 1.0080 0.6170 5.0357 11 6 1.9368 -1.0170 6.0654 12 7 2.6209 -2.1346 5.9425 13 14 1.4606 -0.3951 7.7613 14 1 -0.0185 -0.3059 7.8584 15 1 1.9692 -1.3337 8.7935 16 1 2.0530 0.9488 7.9800 17 7 1.5518 -2.1024 1.2493 18 6 2.2286 -3.0565 0.5798 19 8 3.2437 -2.7708 -0.0242 20 6 1.7346 -4.4529 0.5794 21 7 0.6365 -4.8832 1.2040 22 6 0.4856 -6.1837 1.0000 23 7 -0.4451 -7.0587 1.4042 24 6 -0.3706 -8.3252 1.0671 25 6 0.6830 -8.7838 0.2645 26 6 1.6282 -7.9055 -0.1553 27 7 1.5270 -6.5990 0.2150 28 7 2.3122 -5.4665 -0.0380 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.9647 0.9986 2.5444 39 1 0.4437 0.0782 2.4549 40 1 2.4218 -1.5802 3.6010 41 1 2.8782 -2.6352 6.7324 42 1 0.7413 -2.3304 1.7311 43 1 -1.1280 -9.0165 1.4059 44 1 0.7418 -9.8249 -0.0170 45 1 2.4483 -8.2376 -0.7746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755835162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:58 Heat of formation + Delta-G solvation = 119.692673 kcal Electronic energy + Delta-G solvation = -28923.348018 eV Core-core repulsion = 24979.407440 eV Total energy + Delta-G solvation = -3943.940579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.11126 -40.16346 -38.90733 -37.28913 -34.86336 -34.38229 -33.27987 -31.67968 -31.03336 -30.83394 -27.85906 -27.07837 -26.98023 -25.63544 -24.58581 -23.71959 -23.13210 -21.42474 -20.43352 -18.78536 -18.69842 -18.25733 -17.50522 -16.92644 -16.82247 -16.23851 -15.76458 -15.48269 -14.86209 -14.69114 -14.01709 -13.86314 -13.83848 -13.62747 -13.49002 -13.07783 -12.95562 -12.92593 -12.65805 -12.28505 -12.17102 -11.90911 -11.75561 -11.33750 -11.18694 -11.06829 -10.75148 -10.71102 -10.52037 -10.48648 -10.32845 -10.21134 -10.02905 -9.98195 -9.91059 -9.68443 -9.12049 -8.83676 -8.64900 -6.88801 -5.71034 -3.00855 0.05018 0.34359 1.50006 1.73412 2.82134 2.97969 3.18299 3.46655 3.47950 3.51860 3.53135 3.88245 3.92135 4.35468 4.52153 4.61610 4.78120 4.92680 4.96402 5.07393 5.19523 5.40338 5.59121 5.60574 5.69879 5.72917 5.80071 5.83101 5.88241 5.92705 5.95768 6.07537 6.12295 6.17285 6.19627 6.34755 6.46561 6.49296 6.52520 6.65218 6.74827 6.92025 7.09305 7.46965 7.73312 7.82925 8.33179 8.46156 9.57810 10.13975 10.48803 11.51204 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008665 B = 0.004162 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.440595 B = 6725.997337 C = 9172.157396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.132 4.132 5 C 0.148 3.852 6 H 0.092 0.908 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.677 5.677 18 C 0.610 3.390 19 O -0.510 6.510 20 C 0.249 3.751 21 N -0.488 5.488 22 C 0.441 3.559 23 N -0.445 5.445 24 C 0.206 3.794 25 C -0.222 4.222 26 C 0.172 3.828 27 N -0.330 5.330 28 N -0.271 5.271 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.031 0.969 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.417 0.583 43 H 0.192 0.808 44 H 0.176 0.824 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -12.074 -16.893 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.189 4.189 5 C 0.044 3.956 6 H 0.110 0.890 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.213 1.213 17 N -0.328 5.328 18 C 0.389 3.611 19 O -0.383 6.383 20 C -0.035 4.035 21 N -0.221 5.221 22 C 0.080 3.920 23 N -0.159 5.159 24 C 0.018 3.982 25 C -0.247 4.247 26 C 0.035 3.965 27 N -0.111 5.111 28 N -0.104 5.104 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.254 0.746 43 H 0.209 0.791 44 H 0.193 0.807 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.091 -10.712 -16.858 20.612 hybrid contribution 0.086 -0.947 0.811 1.250 sum -5.005 -11.659 -16.047 20.457 Atomic orbital electron populations 1.21933 0.94476 1.01875 1.01777 1.20920 0.96072 0.95764 0.95086 1.21882 1.01239 0.94722 1.01918 1.21907 1.01726 0.99511 0.95757 1.21464 1.00088 0.78991 0.95038 0.89029 1.21112 0.97649 0.94678 0.85134 1.42348 1.66978 1.27769 1.00503 1.19149 1.29099 1.05521 0.83547 0.91156 1.24741 1.00837 0.97309 0.97805 1.69660 1.43127 1.16495 1.28543 0.86274 0.78004 0.77643 0.84279 1.21234 1.21792 1.21305 1.45708 1.28924 1.07898 1.50272 1.16223 0.83686 0.80662 0.80521 1.90830 1.23687 1.80367 1.43420 1.24374 0.89861 0.96533 0.92748 1.70911 1.19493 1.05247 1.26481 1.22719 0.86315 0.91907 0.91041 1.68099 1.22610 1.02549 1.22633 1.23654 0.95302 0.90613 0.88609 1.21993 0.96546 1.02170 1.03984 1.22216 0.99646 0.79201 0.95410 1.49082 1.19791 1.08311 1.33899 1.78932 1.14791 0.90464 1.26255 0.91688 0.93080 0.92776 0.92455 0.92782 0.91756 0.93260 0.93691 0.91803 0.94334 0.95100 0.78070 0.93521 0.74596 0.79108 0.80677 0.79848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.97 37.16 0.30 -1.61 16 2 C -0.08 -1.10 0.62 -154.50 -0.10 -1.20 16 3 C -0.14 -1.79 8.12 37.16 0.30 -1.49 16 4 C -0.13 -1.92 7.00 37.16 0.26 -1.66 16 5 C 0.15 2.59 1.69 -67.93 -0.11 2.48 16 6 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 7 C 0.14 2.81 5.10 -4.04 -0.02 2.79 16 8 N -0.73 -18.63 5.43 -59.90 -0.33 -18.96 16 9 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 13 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 N -0.68 -12.25 3.64 -54.66 -0.20 -12.45 16 18 C 0.61 11.57 6.20 -12.20 -0.08 11.50 16 19 O -0.51 -10.36 14.19 5.35 0.08 -10.29 16 20 C 0.25 4.62 7.92 -156.79 -1.24 3.38 16 21 N -0.49 -9.04 10.89 -12.24 -0.13 -9.17 16 22 C 0.44 6.95 8.99 -323.05 -2.90 4.05 16 23 N -0.45 -5.67 10.48 -13.79 -0.14 -5.82 16 24 C 0.21 1.35 11.27 -17.07 -0.19 1.15 16 25 C -0.22 -0.97 10.06 -39.77 -0.40 -1.37 16 26 C 0.17 1.30 11.32 -16.54 -0.19 1.11 16 27 N -0.33 -4.52 3.91 -13.80 -0.05 -4.57 16 28 N -0.27 -4.65 12.78 32.02 0.41 -4.24 16 29 H 0.06 0.88 6.32 -51.93 -0.33 0.55 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.75 7.60 -51.93 -0.39 0.36 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 35 H 0.05 0.79 5.77 -51.93 -0.30 0.49 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 38 H 0.04 0.76 6.71 -51.93 -0.35 0.41 16 39 H 0.03 0.60 6.17 -51.93 -0.32 0.28 16 40 H 0.39 10.63 7.33 -40.82 -0.30 10.33 16 41 H 0.25 7.70 8.31 -40.82 -0.34 7.37 16 42 H 0.42 7.78 8.27 -40.82 -0.34 7.44 16 43 H 0.19 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.18 -0.05 8.06 -52.48 -0.42 -0.48 16 45 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -37.43 369.71 -9.68 -47.10 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.96 Total: 11.46 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -4.62 Total: 11.76 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: 0.28 Total: -83.37 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.43 -9.68 -47.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755835162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.795 kcal (2) G-P(sol) polarization free energy of solvation -37.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds