Wall clock time and date at job start Tue Mar 31 2020 18:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46575 * 2 1 4 4 C 1.52998 * 109.47053 * 240.00269 * 2 1 3 5 5 C 1.53001 * 109.47260 * 119.99820 * 2 1 3 6 6 H 1.09001 * 109.47181 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.46941 * 300.00081 * 5 2 1 8 8 N 1.46506 * 109.46670 * 174.99892 * 7 5 2 9 9 C 1.36937 * 119.99655 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00338 * 0.02562 * 9 8 7 11 11 C 1.38821 * 119.99754 * 180.02562 * 9 8 7 12 12 N 1.31611 * 120.00117 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99798 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46925 * 60.00132 * 13 11 9 15 15 H 1.48498 * 109.46902 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47086 * 300.00104 * 13 11 9 17 17 N 1.46497 * 109.47117 * 60.00040 * 5 2 1 18 18 C 1.34784 * 119.99734 * 84.99972 * 17 5 2 19 19 O 1.21520 * 120.00115 * 359.97438 * 18 17 5 20 20 C 1.48123 * 119.99642 * 180.02562 * 18 17 5 21 21 N 1.33462 * 125.32811 * 359.96894 * 20 18 17 22 22 C 1.32504 * 109.75849 * 180.02562 * 21 20 18 23 23 N 1.33982 * 132.34685 * 180.29011 * 22 21 20 24 24 C 1.31266 * 120.87783 * 180.25487 * 23 22 21 25 25 C 1.40163 * 120.35648 * 359.42895 * 24 23 22 26 26 C 1.35683 * 119.27623 * 0.28565 * 25 24 23 27 27 N 1.36173 * 119.02163 * 359.97438 * 26 25 24 28 28 N 1.31991 * 125.31963 * 180.02562 * 20 18 17 29 29 H 1.08998 * 109.46896 * 299.99409 * 1 2 3 30 30 H 1.08995 * 109.47576 * 60.00217 * 1 2 3 31 31 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46789 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47115 * 299.99608 * 3 2 1 34 34 H 1.08995 * 109.47095 * 60.00163 * 3 2 1 35 35 H 1.08998 * 109.47022 * 299.99228 * 4 2 1 36 36 H 1.08995 * 109.47326 * 59.99362 * 4 2 1 37 37 H 1.09001 * 109.46918 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47392 * 294.99620 * 7 5 2 39 39 H 1.09002 * 109.47152 * 55.00652 * 7 5 2 40 40 H 0.96993 * 120.00038 * 0.02562 * 8 7 5 41 41 H 0.96994 * 120.00397 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00610 * 265.00369 * 17 5 2 43 43 H 1.08002 * 119.81996 * 179.73968 * 24 23 22 44 44 H 1.08008 * 120.36641 * 180.30744 * 25 24 23 45 45 H 1.07998 * 120.49020 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 1 3.1301 -0.7208 1.2495 7 6 1.5300 0.0001 2.4985 8 7 1.9177 -0.7566 3.6916 9 6 1.5690 -0.3004 4.9348 10 1 1.0080 0.6170 5.0357 11 6 1.9368 -1.0170 6.0654 12 7 2.6209 -2.1346 5.9425 13 14 1.4606 -0.3951 7.7613 14 1 -0.0185 -0.3059 7.8584 15 1 1.9692 -1.3337 8.7935 16 1 2.0530 0.9488 7.9800 17 7 1.5518 -2.1024 1.2493 18 6 2.2286 -3.0565 0.5798 19 8 3.2437 -2.7708 -0.0242 20 6 1.7346 -4.4529 0.5794 21 7 0.6365 -4.8832 1.2040 22 6 0.4856 -6.1837 1.0000 23 7 -0.4451 -7.0587 1.4042 24 6 -0.3706 -8.3252 1.0671 25 6 0.6830 -8.7838 0.2645 26 6 1.6282 -7.9055 -0.1553 27 7 1.5270 -6.5990 0.2150 28 7 2.3122 -5.4665 -0.0380 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.9647 0.9986 2.5444 39 1 0.4437 0.0782 2.4549 40 1 2.4218 -1.5802 3.6010 41 1 2.8782 -2.6352 6.7324 42 1 0.7413 -2.3304 1.7311 43 1 -1.1280 -9.0165 1.4059 44 1 0.7418 -9.8249 -0.0170 45 1 2.4483 -8.2376 -0.7746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755835162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:57 Heat of formation + Delta-G solvation = 93.553359 kcal Electronic energy + Delta-G solvation = -28924.481504 eV Core-core repulsion = 24979.407440 eV Total energy + Delta-G solvation = -3945.074064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.11112 -41.52159 -39.84369 -38.66065 -36.20698 -35.76614 -34.76070 -33.06896 -32.46221 -31.91599 -29.52230 -28.19255 -28.09047 -26.78668 -25.74714 -25.19153 -24.29443 -23.05361 -21.74239 -19.96071 -19.79840 -19.41346 -18.97361 -18.28664 -17.96499 -17.29952 -17.00838 -16.82676 -16.45925 -15.62754 -15.46805 -15.38603 -15.24035 -14.86277 -14.73012 -14.26428 -14.24427 -13.88850 -13.86616 -13.75403 -13.26802 -13.10001 -13.03002 -12.92614 -12.71516 -12.56921 -12.38341 -12.25043 -12.08000 -11.78313 -11.73460 -11.66023 -11.46546 -11.33158 -11.07415 -10.95035 -10.91064 -10.09543 -10.04779 -8.99673 -7.92961 -5.23017 -0.71617 -0.49843 0.59652 0.61194 1.47022 1.51063 1.56655 1.65700 1.95582 2.18447 2.34622 2.56653 2.88789 3.26252 3.41535 3.47472 3.60678 3.78674 3.95386 4.00323 4.21519 4.24217 4.29411 4.36757 4.40452 4.48295 4.60062 4.78833 4.79960 4.83924 4.85731 4.94705 4.96443 5.04411 5.06490 5.12487 5.21015 5.23005 5.28544 5.34420 5.49208 5.53453 5.56789 6.12520 6.26395 6.30943 6.58803 6.88912 7.33296 8.07056 8.30372 9.30335 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008665 B = 0.004162 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.440595 B = 6725.997337 C = 9172.157396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.123 4.123 5 C 0.155 3.845 6 H 0.068 0.932 7 C 0.145 3.855 8 N -0.745 5.745 9 C -0.243 4.243 10 H 0.083 0.917 11 C -0.076 4.076 12 N -0.972 5.972 13 Si 0.976 3.024 14 H -0.275 1.275 15 H -0.300 1.300 16 H -0.276 1.276 17 N -0.674 5.674 18 C 0.609 3.391 19 O -0.534 6.534 20 C 0.226 3.774 21 N -0.533 5.533 22 C 0.422 3.578 23 N -0.489 5.489 24 C 0.217 3.783 25 C -0.175 4.175 26 C 0.139 3.861 27 N -0.330 5.330 28 N -0.296 5.296 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.370 0.630 41 H 0.248 0.752 42 H 0.413 0.587 43 H 0.245 0.755 44 H 0.240 0.760 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 -13.720 -17.867 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C -0.195 4.195 4 C -0.181 4.181 5 C 0.051 3.949 6 H 0.086 0.914 7 C 0.018 3.982 8 N -0.388 5.388 9 C -0.374 4.374 10 H 0.101 0.899 11 C -0.268 4.268 12 N -0.623 5.623 13 Si 0.804 3.196 14 H -0.201 1.201 15 H -0.226 1.226 16 H -0.202 1.202 17 N -0.323 5.323 18 C 0.390 3.610 19 O -0.409 6.409 20 C -0.058 4.058 21 N -0.269 5.269 22 C 0.062 3.938 23 N -0.206 5.206 24 C 0.034 3.966 25 C -0.198 4.198 26 C 0.005 3.995 27 N -0.111 5.111 28 N -0.132 5.132 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.202 0.798 41 H 0.057 0.943 42 H 0.249 0.751 43 H 0.261 0.739 44 H 0.257 0.743 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.864 -12.378 -17.873 22.799 hybrid contribution 0.522 -0.757 1.018 1.372 sum -6.342 -13.135 -16.855 22.289 Atomic orbital electron populations 1.21894 0.93266 1.01533 1.02898 1.20889 0.96925 0.96315 0.93036 1.21873 1.01023 0.93417 1.03151 1.21807 1.00643 0.98760 0.96870 1.21405 0.98692 0.79045 0.95779 0.91404 1.21264 0.98241 0.94599 0.84062 1.42557 1.66845 1.27720 1.01631 1.19632 1.27777 1.05409 0.84602 0.89934 1.25605 1.01669 0.97777 1.01788 1.69855 1.45255 1.18177 1.28993 0.85178 0.78000 0.77083 0.79293 1.20145 1.22610 1.20181 1.45673 1.28544 1.08126 1.50000 1.16363 0.83313 0.81274 0.80052 1.90786 1.24596 1.81019 1.44518 1.24049 0.90884 0.96413 0.94466 1.70711 1.20260 1.07673 1.28227 1.22864 0.87439 0.91800 0.91659 1.68229 1.22768 1.04676 1.24933 1.24813 0.96341 0.89036 0.86446 1.22799 0.93173 1.04050 0.99799 1.23305 1.02204 0.77149 0.96801 1.49113 1.18825 1.09349 1.33804 1.78695 1.16145 0.91397 1.26938 0.91749 0.90671 0.93905 0.92905 0.90284 0.91740 0.95177 0.91188 0.93388 0.93236 0.93812 0.79811 0.94314 0.75071 0.73929 0.74330 0.76486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 7.97 71.98 0.57 -3.01 16 2 C -0.07 -2.01 0.62 -52.18 -0.03 -2.04 16 3 C -0.14 -3.34 8.12 71.98 0.58 -2.76 16 4 C -0.12 -3.66 7.00 71.98 0.50 -3.16 16 5 C 0.15 5.67 1.69 44.99 0.08 5.75 16 6 H 0.07 2.81 7.58 -2.39 -0.02 2.79 16 7 C 0.14 5.83 5.10 86.38 0.44 6.27 16 8 N -0.74 -39.20 5.43 -343.43 -1.87 -41.07 16 9 C -0.24 -13.82 9.99 84.04 0.84 -12.98 16 10 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 11 C -0.08 -4.53 5.50 84.87 0.47 -4.07 16 12 N -0.97 -62.52 13.06 21.65 0.28 -62.24 16 13 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 17 N -0.67 -26.27 3.64 -445.14 -1.62 -27.89 16 18 C 0.61 25.20 6.20 86.87 0.54 25.74 16 19 O -0.53 -23.50 14.19 -3.78 -0.05 -23.56 16 20 C 0.23 9.11 7.92 137.40 1.09 10.20 16 21 N -0.53 -21.32 10.89 -192.63 -2.10 -23.42 16 22 C 0.42 13.79 8.99 261.57 2.35 16.14 16 23 N -0.49 -12.10 10.48 -197.54 -2.07 -14.17 16 24 C 0.22 1.98 11.27 85.25 0.96 2.94 16 25 C -0.17 -0.63 10.06 22.15 0.22 -0.41 16 26 C 0.14 1.75 11.32 83.43 0.94 2.69 16 27 N -0.33 -9.16 3.91 -197.58 -0.77 -9.93 16 28 N -0.30 -10.83 12.78 -52.61 -0.67 -11.51 16 29 H 0.06 1.66 6.32 -2.39 -0.02 1.65 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.20 7.60 -2.39 -0.02 1.18 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.57 6.54 -2.39 -0.02 1.55 16 35 H 0.03 1.00 5.77 -2.39 -0.01 0.98 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.56 7.53 -2.39 -0.02 1.54 16 38 H 0.05 1.93 6.71 -2.39 -0.02 1.91 16 39 H 0.04 1.69 6.17 -2.39 -0.01 1.67 16 40 H 0.37 21.56 7.33 -92.71 -0.68 20.88 16 41 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.41 16.71 8.27 -92.71 -0.77 15.95 16 43 H 0.24 -0.52 8.06 -2.91 -0.02 -0.55 16 44 H 0.24 -2.12 8.06 -2.91 -0.02 -2.15 16 45 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -89.91 369.71 2.32 -87.59 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.40 Total: 35.34 kcal Atomic # 6 Polarization: 31.75 SS G_CDS: 9.56 Total: 41.31 kcal Atomic # 7 Polarization: -181.40 SS G_CDS: -8.82 Total: -190.22 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -89.91 2.32 -87.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755835162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.148 kcal (2) G-P(sol) polarization free energy of solvation -89.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds