Wall clock time and date at job start Tue Mar 31 2020 17:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30293 * 126.34492 * 2 1 4 4 N 1.28530 * 110.05703 * 180.02562 * 3 2 1 5 5 C 1.31220 * 109.85527 * 359.73938 * 4 3 2 6 6 N 1.38580 * 126.47207 * 180.25665 * 5 4 3 7 7 C 1.46895 * 111.00445 * 260.83292 * 6 5 4 8 8 C 1.46899 * 110.99898 * 24.78835 * 6 5 4 9 9 H 1.08999 * 109.47296 * 299.99409 * 8 6 5 10 10 C 1.52999 * 109.47343 * 59.99887 * 8 6 5 11 11 C 1.50705 * 109.47088 * 179.97438 * 8 6 5 12 12 H 1.07997 * 120.00008 * 0.02562 * 11 8 6 13 13 C 1.37881 * 119.99711 * 179.97438 * 11 8 6 14 14 N 1.31509 * 120.00331 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99688 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47179 * 90.00026 * 15 13 11 17 17 H 1.48498 * 109.47231 * 210.00203 * 15 13 11 18 18 H 1.48498 * 109.47353 * 330.00172 * 15 13 11 19 19 N 1.36451 * 107.05675 * 0.40699 * 5 4 3 20 20 C 1.46495 * 127.13795 * 179.87335 * 19 5 4 21 21 C 1.52994 * 109.47194 * 263.96040 * 20 19 5 22 22 C 1.52998 * 109.47149 * 175.11843 * 21 20 19 23 23 O 1.42907 * 109.47133 * 180.02562 * 22 21 20 24 24 C 1.42898 * 114.00163 * 180.02562 * 23 22 21 25 25 C 1.52994 * 109.47307 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.47056 * 299.99955 * 25 24 23 27 27 F 1.39900 * 109.47427 * 59.99704 * 25 24 23 28 28 H 1.09009 * 109.47157 * 269.95841 * 1 2 3 29 29 H 1.09000 * 109.47639 * 29.95622 * 1 2 3 30 30 H 1.09000 * 109.47044 * 149.96498 * 1 2 3 31 31 H 1.09003 * 109.47195 * 54.82626 * 7 6 5 32 32 H 1.08997 * 109.47453 * 174.83271 * 7 6 5 33 33 H 1.09004 * 109.47000 * 294.83294 * 7 6 5 34 34 H 1.09005 * 109.47062 * 300.00025 * 10 8 6 35 35 H 1.08999 * 109.47315 * 59.99534 * 10 8 6 36 36 H 1.09002 * 109.47552 * 180.02562 * 10 8 6 37 37 H 0.96998 * 120.00186 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47140 * 143.96410 * 20 19 5 39 39 H 1.08996 * 109.47282 * 23.96323 * 20 19 5 40 40 H 1.09009 * 109.47303 * 55.11964 * 21 20 19 41 41 H 1.09001 * 109.47314 * 295.12620 * 21 20 19 42 42 H 1.08993 * 109.47424 * 300.00372 * 22 21 20 43 43 H 1.09003 * 109.46981 * 60.00606 * 22 21 20 44 44 H 1.09000 * 109.46671 * 299.99792 * 24 23 22 45 45 H 1.08997 * 109.47262 * 59.99655 * 24 23 22 46 46 H 1.09000 * 109.47133 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5128 0.6890 -0.0005 5 6 3.5945 -0.6207 0.0047 6 7 4.7580 -1.3735 0.0109 7 6 5.0852 -1.8481 -1.3402 8 6 5.8747 -0.6119 0.5861 9 1 6.0438 0.2878 -0.0054 10 6 5.5365 -0.2197 2.0258 11 6 7.1196 -1.4612 0.5766 12 1 7.0848 -2.4660 0.1823 13 6 8.3032 -0.9549 1.0704 14 7 8.3460 0.2691 1.5492 15 14 9.8464 -2.0074 1.0580 16 1 10.5776 -1.7987 -0.2175 17 1 10.7178 -1.6217 2.1969 18 1 9.4707 -3.4385 1.1847 19 7 2.3175 -1.1013 -0.0005 20 6 1.9011 -2.5059 -0.0002 21 6 1.6173 -2.9540 -1.4353 22 6 1.3008 -4.4508 -1.4490 23 8 1.0363 -4.8695 -2.7895 24 6 0.7271 -6.2590 -2.9142 25 6 0.4629 -6.5929 -4.3837 26 9 -0.6151 -5.8318 -4.8483 27 9 1.6020 -6.2988 -5.1409 28 1 -0.3634 -0.0007 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8897 -0.5144 31 1 5.1353 -0.9987 -2.0215 32 1 6.0487 -2.3574 -1.3230 33 1 4.3143 -2.5404 -1.6788 34 1 4.6360 0.3945 2.0331 35 1 5.3674 -1.1194 2.6174 36 1 6.3649 0.3458 2.4525 37 1 9.1786 0.6251 1.8970 38 1 0.9982 -2.6171 0.6003 39 1 2.6962 -3.1205 0.4218 40 1 2.4928 -2.7620 -2.0557 41 1 0.7653 -2.3987 -1.8276 42 1 2.1528 -5.0060 -1.0568 43 1 0.4253 -4.6427 -0.8287 44 1 1.5669 -6.8519 -2.5518 45 1 -0.1606 -6.4880 -2.3247 46 1 0.2275 -7.6529 -4.4788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001762502085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:31 Heat of formation + Delta-G solvation = -58.517807 kcal Electronic energy + Delta-G solvation = -29337.789107 eV Core-core repulsion = 24935.431555 eV Total energy + Delta-G solvation = -4402.357551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.24401 -47.28151 -42.48566 -38.59423 -37.07952 -35.77114 -32.96204 -32.29524 -31.31428 -30.04331 -29.24670 -27.40438 -25.99086 -25.25933 -24.27883 -23.35828 -22.37912 -21.82156 -20.26089 -19.43895 -18.26985 -17.85436 -17.09013 -16.97747 -16.45388 -16.28312 -16.07236 -15.72768 -15.30190 -14.84977 -14.51819 -14.20504 -14.09546 -13.83067 -13.76467 -13.63236 -13.16111 -13.11455 -12.81094 -12.74191 -12.59667 -12.54728 -12.30488 -11.89813 -11.60849 -11.36893 -11.35132 -11.06163 -10.96779 -10.92199 -10.70178 -10.29431 -10.22176 -10.14654 -10.07935 -9.91217 -9.73485 -9.16519 -8.59379 -8.44305 -7.49129 -6.04730 -4.12245 2.18761 2.53863 2.94745 3.28114 3.34856 3.37002 3.40849 3.46076 3.76166 4.03585 4.30805 4.40853 4.44780 4.61475 4.62751 4.67411 4.78850 4.81233 4.86962 4.95828 5.05117 5.13847 5.23188 5.27334 5.46710 5.54695 5.63116 5.72232 5.87776 6.02773 6.14129 6.21967 6.42569 6.53553 6.57200 6.92387 6.95272 7.10649 7.22285 7.45989 7.69896 7.74097 7.96749 8.23986 8.46030 8.89983 9.34951 9.52345 11.01811 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.010575 B = 0.003136 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.154999 B = 8927.620065 C =11080.065388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.149 3.851 3 N -0.289 5.289 4 N -0.315 5.315 5 C 0.384 3.616 6 N -0.464 5.464 7 C 0.039 3.961 8 C 0.228 3.772 9 H 0.025 0.975 10 C -0.132 4.132 11 C -0.516 4.516 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.480 5.480 20 C 0.118 3.882 21 C -0.138 4.138 22 C 0.068 3.932 23 O -0.375 6.375 24 C 0.009 3.991 25 C 0.271 3.729 26 F -0.200 7.200 27 F -0.198 7.198 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.098 0.902 33 H 0.047 0.953 34 H 0.017 0.983 35 H 0.026 0.974 36 H 0.090 0.910 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 -15.627 -6.505 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 N -0.129 5.129 4 N -0.158 5.158 5 C 0.029 3.971 6 N -0.190 5.190 7 C -0.109 4.109 8 C 0.124 3.876 9 H 0.043 0.957 10 C -0.190 4.190 11 C -0.555 4.555 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.177 5.177 20 C -0.006 4.006 21 C -0.176 4.176 22 C -0.009 4.009 23 O -0.294 6.294 24 C -0.069 4.069 25 C 0.217 3.783 26 F -0.182 7.182 27 F -0.180 7.180 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.864 -14.290 -6.303 24.490 hybrid contribution 0.626 -1.469 -0.166 1.605 sum -18.238 -15.759 -6.469 24.956 Atomic orbital electron populations 1.20076 0.84448 1.03797 1.03292 1.24582 0.96209 0.82898 1.08162 1.73959 0.97051 1.24288 1.17621 1.74795 1.10759 1.08058 1.22217 1.23036 0.85343 0.89033 0.99715 1.59162 1.01416 1.37498 1.20932 1.22396 1.02594 0.99116 0.86745 1.19339 0.84029 0.92031 0.92196 0.95673 1.21805 1.00159 0.99013 0.98053 1.21057 0.92447 1.00189 1.41799 0.91687 1.24906 0.98877 0.95084 0.95030 1.69916 1.26866 1.14848 1.40535 0.86478 0.82710 0.80434 0.77654 1.20630 1.21172 1.19866 1.46210 1.06414 1.07470 1.57575 1.21558 1.02538 0.79611 0.96888 1.21926 1.04156 0.94484 0.97027 1.22417 1.00102 0.95246 0.83088 1.87971 1.90754 1.22560 1.28095 1.23670 1.02569 0.85502 0.95116 1.22022 0.73340 0.95260 0.87688 1.93014 1.55785 1.79208 1.90173 1.93031 1.51614 1.95148 1.78158 0.90293 0.89166 0.91070 0.95394 0.88325 0.93393 0.96420 0.95505 0.89188 0.92717 0.89129 0.87597 0.89750 0.90317 0.92101 0.92574 0.89942 0.90160 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.20 36.00 0.37 -0.22 16 2 C 0.15 2.43 8.07 -154.02 -1.24 1.19 16 3 N -0.29 -6.07 12.18 32.99 0.40 -5.67 16 4 N -0.32 -7.44 10.28 30.31 0.31 -7.13 16 5 C 0.38 8.08 5.91 -318.87 -1.88 6.20 16 6 N -0.46 -10.13 4.61 -176.08 -0.81 -10.94 16 7 C 0.04 0.75 9.36 60.06 0.56 1.31 16 8 C 0.23 5.92 1.74 -68.86 -0.12 5.80 16 9 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 10 C -0.13 -3.45 8.81 37.16 0.33 -3.12 16 11 C -0.52 -13.80 7.81 -34.44 -0.27 -14.07 16 12 H 0.07 1.67 6.44 -52.49 -0.34 1.33 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.88 -25.34 11.32 55.43 0.63 -24.72 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.48 -7.87 2.81 -114.09 -0.32 -8.19 16 20 C 0.12 1.34 5.85 -4.05 -0.02 1.31 16 21 C -0.14 -1.41 5.90 -26.73 -0.16 -1.56 16 22 C 0.07 0.55 5.94 37.16 0.22 0.77 16 23 O -0.37 -3.69 10.23 -35.23 -0.36 -4.05 16 24 C 0.01 0.06 6.16 37.15 0.23 0.28 16 25 C 0.27 1.76 5.63 37.15 0.21 1.97 16 26 F -0.20 -1.88 17.28 2.25 0.04 -1.85 16 27 F -0.20 -1.99 17.28 2.25 0.04 -1.95 16 28 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.56 7.59 -51.93 -0.39 0.17 16 31 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.10 1.94 5.96 -51.93 -0.31 1.63 16 33 H 0.05 0.76 6.15 -51.93 -0.32 0.45 16 34 H 0.02 0.44 6.40 -51.93 -0.33 0.11 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 39 H 0.11 1.26 8.09 -51.93 -0.42 0.84 16 40 H 0.08 1.07 6.16 -51.92 -0.32 0.75 16 41 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -35.33 381.66 -8.14 -43.47 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.92 Total: -2.03 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.88 Total: 1.49 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.21 Total: -56.65 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.36 Total: -4.05 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.08 Total: -3.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.33 -8.14 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001762502085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.052 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds