Wall clock time and date at job start Tue Mar 31 2020 17:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30293 * 126.34492 * 2 1 4 4 N 1.28530 * 110.05703 * 180.02562 * 3 2 1 5 5 C 1.31220 * 109.85527 * 359.73938 * 4 3 2 6 6 N 1.38580 * 126.47207 * 180.25665 * 5 4 3 7 7 C 1.46895 * 111.00445 * 260.83292 * 6 5 4 8 8 C 1.46899 * 110.99898 * 24.78835 * 6 5 4 9 9 H 1.08999 * 109.47296 * 299.99409 * 8 6 5 10 10 C 1.52999 * 109.47343 * 59.99887 * 8 6 5 11 11 C 1.50705 * 109.47088 * 179.97438 * 8 6 5 12 12 H 1.07997 * 120.00008 * 0.02562 * 11 8 6 13 13 C 1.37881 * 119.99711 * 179.97438 * 11 8 6 14 14 N 1.31509 * 120.00331 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99688 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47179 * 90.00026 * 15 13 11 17 17 H 1.48498 * 109.47231 * 210.00203 * 15 13 11 18 18 H 1.48498 * 109.47353 * 330.00172 * 15 13 11 19 19 N 1.36451 * 107.05675 * 0.40699 * 5 4 3 20 20 C 1.46495 * 127.13795 * 179.87335 * 19 5 4 21 21 C 1.52994 * 109.47194 * 263.96040 * 20 19 5 22 22 C 1.52998 * 109.47149 * 175.11843 * 21 20 19 23 23 O 1.42907 * 109.47133 * 180.02562 * 22 21 20 24 24 C 1.42898 * 114.00163 * 180.02562 * 23 22 21 25 25 C 1.52994 * 109.47307 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.47056 * 299.99955 * 25 24 23 27 27 F 1.39900 * 109.47427 * 59.99704 * 25 24 23 28 28 H 1.09009 * 109.47157 * 269.95841 * 1 2 3 29 29 H 1.09000 * 109.47639 * 29.95622 * 1 2 3 30 30 H 1.09000 * 109.47044 * 149.96498 * 1 2 3 31 31 H 1.09003 * 109.47195 * 54.82626 * 7 6 5 32 32 H 1.08997 * 109.47453 * 174.83271 * 7 6 5 33 33 H 1.09004 * 109.47000 * 294.83294 * 7 6 5 34 34 H 1.09005 * 109.47062 * 300.00025 * 10 8 6 35 35 H 1.08999 * 109.47315 * 59.99534 * 10 8 6 36 36 H 1.09002 * 109.47552 * 180.02562 * 10 8 6 37 37 H 0.96998 * 120.00186 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47140 * 143.96410 * 20 19 5 39 39 H 1.08996 * 109.47282 * 23.96323 * 20 19 5 40 40 H 1.09009 * 109.47303 * 55.11964 * 21 20 19 41 41 H 1.09001 * 109.47314 * 295.12620 * 21 20 19 42 42 H 1.08993 * 109.47424 * 300.00372 * 22 21 20 43 43 H 1.09003 * 109.46981 * 60.00606 * 22 21 20 44 44 H 1.09000 * 109.46671 * 299.99792 * 24 23 22 45 45 H 1.08997 * 109.47262 * 59.99655 * 24 23 22 46 46 H 1.09000 * 109.47133 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5128 0.6890 -0.0005 5 6 3.5945 -0.6207 0.0047 6 7 4.7580 -1.3735 0.0109 7 6 5.0852 -1.8481 -1.3402 8 6 5.8747 -0.6119 0.5861 9 1 6.0438 0.2878 -0.0054 10 6 5.5365 -0.2197 2.0258 11 6 7.1196 -1.4612 0.5766 12 1 7.0848 -2.4660 0.1823 13 6 8.3032 -0.9549 1.0704 14 7 8.3460 0.2691 1.5492 15 14 9.8464 -2.0074 1.0580 16 1 10.5776 -1.7987 -0.2175 17 1 10.7178 -1.6217 2.1969 18 1 9.4707 -3.4385 1.1847 19 7 2.3175 -1.1013 -0.0005 20 6 1.9011 -2.5059 -0.0002 21 6 1.6173 -2.9540 -1.4353 22 6 1.3008 -4.4508 -1.4490 23 8 1.0363 -4.8695 -2.7895 24 6 0.7271 -6.2590 -2.9142 25 6 0.4629 -6.5929 -4.3837 26 9 -0.6151 -5.8318 -4.8483 27 9 1.6020 -6.2988 -5.1409 28 1 -0.3634 -0.0007 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8897 -0.5144 31 1 5.1353 -0.9987 -2.0215 32 1 6.0487 -2.3574 -1.3230 33 1 4.3143 -2.5404 -1.6788 34 1 4.6360 0.3945 2.0331 35 1 5.3674 -1.1194 2.6174 36 1 6.3649 0.3458 2.4525 37 1 9.1786 0.6251 1.8970 38 1 0.9982 -2.6171 0.6003 39 1 2.6962 -3.1205 0.4218 40 1 2.4928 -2.7620 -2.0557 41 1 0.7653 -2.3987 -1.8276 42 1 2.1528 -5.0060 -1.0568 43 1 0.4253 -4.6427 -0.8287 44 1 1.5669 -6.8519 -2.5518 45 1 -0.1606 -6.4880 -2.3247 46 1 0.2275 -7.6529 -4.4788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001762502085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:31 Heat of formation + Delta-G solvation = -80.937332 kcal Electronic energy + Delta-G solvation = -29338.761290 eV Core-core repulsion = 24935.431555 eV Total energy + Delta-G solvation = -4403.329735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.81969 -47.88924 -43.93459 -39.18951 -38.85603 -36.86412 -34.93493 -33.23909 -32.57307 -31.23508 -30.62522 -28.79979 -27.18418 -26.86123 -26.01454 -23.81372 -23.65047 -23.13643 -21.52994 -21.11442 -18.86568 -18.49030 -18.39909 -17.86562 -17.66140 -17.39906 -17.09749 -16.96160 -16.70425 -16.25714 -15.67403 -15.58718 -15.07219 -14.93030 -14.71063 -14.58498 -14.29110 -14.26562 -13.94727 -13.89178 -13.53942 -13.47749 -13.24847 -13.20306 -13.01844 -12.78914 -12.73054 -12.54156 -12.30418 -12.20704 -12.12340 -12.05900 -11.94598 -11.81594 -11.42383 -11.08027 -11.05252 -10.70483 -10.58974 -10.24032 -9.21930 -8.13387 -6.28908 0.82525 1.32308 1.46037 1.46326 1.57366 1.89412 2.35913 2.43463 2.98073 3.05073 3.18334 3.42455 3.54015 3.62211 3.63467 3.86243 3.94187 4.04895 4.11546 4.25240 4.27947 4.38434 4.41397 4.44483 4.49580 4.55522 4.57740 4.72332 4.74557 4.80102 4.87794 4.90124 4.97852 4.99690 5.08855 5.15094 5.20359 5.42311 5.58589 5.64487 5.91758 5.99389 6.06563 6.15460 6.60295 6.81527 7.40086 7.85733 8.93858 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.010575 B = 0.003136 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.154999 B = 8927.620065 C =11080.065388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.176 3.824 3 N -0.342 5.342 4 N -0.369 5.369 5 C 0.363 3.637 6 N -0.457 5.457 7 C 0.044 3.956 8 C 0.240 3.760 9 H -0.026 1.026 10 C -0.114 4.114 11 C -0.526 4.526 12 H 0.076 0.924 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.971 3.029 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.259 1.259 19 N -0.472 5.472 20 C 0.111 3.889 21 C -0.130 4.130 22 C 0.072 3.928 23 O -0.411 6.411 24 C 0.004 3.996 25 C 0.256 3.744 26 F -0.221 7.221 27 F -0.224 7.224 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.007 0.993 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.011 0.989 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.672 -19.093 -6.226 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 N -0.181 5.181 4 N -0.212 5.212 5 C 0.005 3.995 6 N -0.182 5.182 7 C -0.103 4.103 8 C 0.134 3.866 9 H -0.008 1.008 10 C -0.172 4.172 11 C -0.565 4.565 12 H 0.094 0.906 13 C -0.188 4.188 14 N -0.560 5.560 15 Si 0.796 3.204 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.183 1.183 19 N -0.167 5.167 20 C -0.010 4.010 21 C -0.168 4.168 22 C -0.005 4.005 23 O -0.331 6.331 24 C -0.073 4.073 25 C 0.203 3.797 26 F -0.202 7.202 27 F -0.206 7.206 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.026 0.974 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.030 0.970 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.152 0.848 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.127 0.873 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.180 -17.791 -6.038 28.312 hybrid contribution 1.155 -0.395 -0.297 1.256 sum -20.025 -18.185 -6.335 27.782 Atomic orbital electron populations 1.20438 0.79684 1.05909 1.05507 1.25764 0.98322 0.81717 1.03498 1.73852 0.96725 1.26598 1.20933 1.74642 1.12789 1.10038 1.23721 1.22888 0.86532 0.88790 1.01277 1.59089 1.00679 1.36518 1.21939 1.22413 1.03635 0.98816 0.85444 1.18944 0.85781 0.90596 0.91298 1.00783 1.21567 0.98717 0.98570 0.98360 1.21363 0.92902 1.00599 1.41590 0.90593 1.25828 1.02273 0.96208 0.94496 1.70081 1.27672 1.16748 1.41455 0.85357 0.78335 0.79206 0.77532 1.20189 1.21169 1.18295 1.46432 1.04495 1.09551 1.56252 1.21988 1.04142 0.76499 0.98406 1.21811 1.02856 0.96679 0.95453 1.22417 1.01779 0.93235 0.83050 1.87916 1.91158 1.24886 1.29092 1.23945 1.04521 0.83858 0.94997 1.22792 0.71862 0.97395 0.87606 1.92966 1.56703 1.80071 1.90490 1.92974 1.53139 1.95483 1.78974 0.87793 0.88409 0.87612 0.97395 0.88811 0.89844 0.96989 0.94946 0.91728 0.92772 0.84806 0.88019 0.92886 0.89943 0.91546 0.89391 0.88276 0.87311 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.20 71.23 0.73 -0.22 16 2 C 0.18 5.50 8.07 137.64 1.11 6.61 16 3 N -0.34 -14.66 12.18 -49.54 -0.60 -15.26 16 4 N -0.37 -18.26 10.28 -58.00 -0.60 -18.86 16 5 C 0.36 15.59 5.91 260.11 1.54 17.13 16 6 N -0.46 -20.41 4.61 -711.01 -3.28 -23.69 16 7 C 0.04 1.73 9.36 127.69 1.19 2.92 16 8 C 0.24 12.99 1.74 44.17 0.08 13.06 16 9 H -0.03 -1.62 7.89 -2.39 -0.02 -1.64 16 10 C -0.11 -6.21 8.81 71.98 0.63 -5.57 16 11 C -0.53 -28.67 7.81 25.60 0.20 -28.47 16 12 H 0.08 3.89 6.44 -2.91 -0.02 3.87 16 13 C 0.01 0.62 5.30 84.66 0.45 1.07 16 14 N -0.92 -54.67 11.32 21.45 0.24 -54.42 16 15 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 N -0.47 -14.85 2.81 -514.88 -1.45 -16.30 16 20 C 0.11 2.16 5.85 86.38 0.51 2.67 16 21 C -0.13 -2.30 5.90 30.59 0.18 -2.12 16 22 C 0.07 0.88 5.94 71.98 0.43 1.31 16 23 O -0.41 -7.00 10.23 -148.98 -1.52 -8.53 16 24 C 0.00 0.03 6.16 71.98 0.44 0.48 16 25 C 0.26 2.73 5.63 71.98 0.41 3.13 16 26 F -0.22 -3.80 17.28 44.97 0.78 -3.03 16 27 F -0.22 -4.29 17.28 44.97 0.78 -3.51 16 28 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.11 1.09 7.59 -2.39 -0.02 1.08 16 31 H 0.01 0.31 8.11 -2.39 -0.02 0.29 16 32 H 0.09 3.73 5.96 -2.39 -0.01 3.72 16 33 H 0.08 2.64 6.15 -2.39 -0.01 2.63 16 34 H 0.01 0.62 6.40 -2.38 -0.02 0.60 16 35 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 3.83 6.07 -2.39 -0.01 3.82 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.13 1.50 8.07 -2.38 -0.02 1.48 16 39 H 0.10 2.14 8.09 -2.39 -0.02 2.12 16 40 H 0.05 1.28 6.16 -2.38 -0.01 1.26 16 41 H 0.08 1.40 7.75 -2.39 -0.02 1.38 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.17 0.04 8.14 -2.39 -0.02 0.02 16 Total: -1.00 -83.86 381.66 5.25 -78.60 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.99 Total: 8.02 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 7.89 Total: 12.00 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -5.68 Total: -128.53 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -1.52 Total: -8.53 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 1.55 Total: -6.54 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -83.86 5.25 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001762502085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.334 kcal (2) G-P(sol) polarization free energy of solvation -83.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds