Wall clock time and date at job start Tue Mar 31 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30288 * 126.35068 * 2 1 4 4 N 1.28525 * 110.05543 * 179.76112 * 3 2 1 5 5 C 1.31214 * 109.86067 * 0.45497 * 4 3 2 6 6 N 1.38580 * 126.47174 * 179.82378 * 5 4 3 7 7 C 1.46891 * 111.00039 * 306.02650 * 6 5 4 8 8 C 1.46897 * 111.00402 * 69.98577 * 6 5 4 9 9 H 1.09005 * 109.47007 * 54.99540 * 8 6 5 10 10 C 1.53003 * 109.47092 * 295.00125 * 8 6 5 11 11 C 1.50695 * 109.47465 * 174.99734 * 8 6 5 12 12 H 1.08003 * 120.00078 * 0.02562 * 11 8 6 13 13 C 1.37874 * 120.00069 * 180.02562 * 11 8 6 14 14 N 1.31520 * 120.00099 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 120.00024 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46875 * 59.99818 * 15 13 11 17 17 H 1.48500 * 109.47127 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46808 * 299.99675 * 15 13 11 19 19 N 1.36453 * 107.05361 * 359.55658 * 5 4 3 20 20 C 1.46498 * 127.13764 * 180.28557 * 19 5 4 21 21 C 1.52996 * 109.47538 * 93.68381 * 20 19 5 22 22 C 1.52998 * 109.47563 * 179.97438 * 21 20 19 23 23 O 1.42897 * 109.47317 * 179.97438 * 22 21 20 24 24 C 1.42897 * 114.00130 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47142 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.46639 * 299.99219 * 25 24 23 27 27 F 1.39894 * 109.47348 * 59.99743 * 25 24 23 28 28 H 1.08994 * 109.47844 * 269.95929 * 1 2 3 29 29 H 1.09001 * 109.47012 * 29.96053 * 1 2 3 30 30 H 1.09007 * 109.47410 * 149.95437 * 1 2 3 31 31 H 1.08999 * 109.47286 * 54.17738 * 7 6 5 32 32 H 1.08999 * 109.47286 * 174.17744 * 7 6 5 33 33 H 1.09001 * 109.47300 * 294.17972 * 7 6 5 34 34 H 1.09001 * 109.46854 * 300.00085 * 10 8 6 35 35 H 1.08996 * 109.47101 * 59.99223 * 10 8 6 36 36 H 1.08997 * 109.47350 * 180.02562 * 10 8 6 37 37 H 0.97000 * 119.99914 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46929 * 213.68375 * 20 19 5 39 39 H 1.08998 * 109.47241 * 333.68115 * 20 19 5 40 40 H 1.09002 * 109.47006 * 299.99947 * 21 20 19 41 41 H 1.08998 * 109.47071 * 59.99631 * 21 20 19 42 42 H 1.08994 * 109.47285 * 300.00355 * 22 21 20 43 43 H 1.09008 * 109.46587 * 59.99794 * 22 21 20 44 44 H 1.09009 * 109.46853 * 299.99860 * 24 23 22 45 45 H 1.08993 * 109.47110 * 59.99482 * 24 23 22 46 46 H 1.09006 * 109.47050 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2792 1.0493 0.0000 4 7 3.5128 0.6887 0.0050 5 6 3.5944 -0.6209 -0.0013 6 7 4.7579 -1.3737 -0.0021 7 6 5.6408 -0.9770 -1.1070 8 6 5.4517 -1.2721 1.2887 9 1 4.7696 -1.5537 2.0910 10 6 5.9233 0.1677 1.5023 11 6 6.6418 -2.1964 1.2936 12 1 6.8612 -2.7989 0.4245 13 6 7.4507 -2.2731 2.4075 14 7 7.1838 -1.5391 3.4657 15 14 8.9264 -3.4184 2.4132 16 1 9.8558 -3.0337 1.3208 17 1 9.6276 -3.3157 3.7182 18 1 8.4692 -4.8158 2.2051 19 7 2.3173 -1.1014 -0.0008 20 6 1.9009 -2.5060 -0.0006 21 6 1.6675 -2.9687 1.4389 22 6 1.2320 -4.4353 1.4390 23 8 1.0146 -4.8676 2.7836 24 6 0.6028 -6.2313 2.8964 25 6 0.4002 -6.5825 4.3716 26 9 1.6021 -6.3998 5.0638 27 9 -0.5837 -5.7516 4.9180 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3634 -0.8896 -0.5146 31 1 5.8220 0.0968 -1.0598 32 1 6.5884 -1.5093 -1.0239 33 1 5.1673 -1.2241 -2.0571 34 1 6.6053 0.4494 0.7000 35 1 5.0625 0.8363 1.4988 36 1 6.4385 0.2431 2.4599 37 1 7.7527 -1.5933 4.2495 38 1 0.9775 -2.6112 -0.5702 39 1 2.6805 -3.1162 -0.4565 40 1 2.5909 -2.8635 2.0085 41 1 0.8879 -2.3584 1.8948 42 1 0.3086 -4.5402 0.8695 43 1 2.0114 -5.0458 0.9829 44 1 -0.3339 -6.3737 2.3573 45 1 1.3691 -6.8787 2.4702 46 1 0.0856 -7.6227 4.4576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001762502086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:37 Heat of formation + Delta-G solvation = -58.304990 kcal Electronic energy + Delta-G solvation = -29681.056288 eV Core-core repulsion = 25278.707965 eV Total energy + Delta-G solvation = -4402.348323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -49.05271 -47.09048 -42.49179 -38.38654 -37.21360 -35.64368 -32.92602 -32.19686 -31.32664 -29.88202 -28.74923 -27.11135 -25.93445 -25.17334 -25.08168 -23.17613 -22.18778 -21.44748 -20.41923 -19.40044 -18.08353 -17.66145 -16.91793 -16.76868 -16.32452 -16.24018 -15.90947 -15.80458 -15.18084 -14.66880 -14.61353 -14.01431 -13.92863 -13.70963 -13.65510 -13.43931 -13.13734 -12.99240 -12.75087 -12.61242 -12.44055 -12.33517 -12.22852 -11.55938 -11.42522 -11.26610 -11.16636 -11.10940 -11.07599 -10.89517 -10.77834 -10.54542 -10.15746 -10.11723 -9.98223 -9.87163 -9.71674 -8.89638 -8.45349 -8.38746 -7.69679 -6.05313 -4.12082 2.16585 2.62457 3.10052 3.29698 3.34042 3.35332 3.37675 3.64473 3.93117 4.21192 4.34032 4.54903 4.59797 4.64237 4.70448 4.84812 4.94629 4.96146 5.06007 5.09844 5.14077 5.24722 5.26553 5.37405 5.49405 5.70172 5.79737 5.85928 6.00440 6.14098 6.24725 6.39633 6.49848 6.63827 6.76455 6.86636 7.06220 7.09473 7.19090 7.54343 7.66284 7.76475 7.94143 8.27500 8.47585 8.90484 9.27785 9.52617 11.01350 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.007367 B = 0.004501 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3799.742098 B = 6219.409085 C = 9198.431223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.155 3.845 3 N -0.295 5.295 4 N -0.314 5.314 5 C 0.377 3.623 6 N -0.471 5.471 7 C 0.045 3.955 8 C 0.226 3.774 9 H 0.036 0.964 10 C -0.173 4.173 11 C -0.509 4.509 12 H 0.065 0.935 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.470 5.470 20 C 0.122 3.878 21 C -0.136 4.136 22 C 0.072 3.928 23 O -0.372 6.372 24 C 0.010 3.990 25 C 0.270 3.730 26 F -0.196 7.196 27 F -0.201 7.201 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.263 0.737 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.048 -10.936 -5.395 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.112 4.112 3 N -0.136 5.136 4 N -0.157 5.157 5 C 0.022 3.978 6 N -0.197 5.197 7 C -0.103 4.103 8 C 0.122 3.878 9 H 0.054 0.946 10 C -0.232 4.232 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.165 5.165 20 C -0.002 4.002 21 C -0.175 4.175 22 C -0.005 4.005 23 O -0.291 6.291 24 C -0.068 4.068 25 C 0.217 3.783 26 F -0.177 7.177 27 F -0.183 7.183 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.633 -9.799 -5.084 19.963 hybrid contribution 0.666 -1.386 0.173 1.547 sum -15.967 -11.184 -4.911 20.103 Atomic orbital electron populations 1.20090 0.84377 1.03704 1.03521 1.24620 0.96300 0.82971 1.07354 1.73944 0.97119 1.24366 1.18180 1.74736 1.11027 1.08882 1.21025 1.22928 0.86188 0.88389 1.00321 1.59417 1.02269 1.49231 1.08789 1.22247 0.97168 1.00205 0.90678 1.19383 0.92758 0.93902 0.81770 0.94620 1.22441 0.99993 0.97524 1.03275 1.20935 1.09605 1.23461 1.00778 0.91718 1.24906 0.97820 0.95836 0.95348 1.69899 1.38839 1.39427 1.04325 0.86532 0.82407 0.81059 0.77224 1.20203 1.21291 1.20242 1.46296 1.06594 1.07699 1.55885 1.21544 1.01993 0.79217 0.97407 1.21831 1.04459 0.94492 0.96673 1.22378 0.99625 0.95528 0.83008 1.88004 1.88730 1.24973 1.27384 1.23656 1.01731 0.86383 0.95075 1.22008 0.74111 0.94351 0.87860 1.93050 1.46744 1.96653 1.81280 1.93006 1.62313 1.75470 1.87468 0.90104 0.89168 0.91030 0.94127 0.89079 0.93821 0.94984 0.94816 0.89561 0.92696 0.89476 0.87577 0.88970 0.90647 0.92969 0.92149 0.90356 0.90005 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.25 36.00 0.37 -0.23 16 2 C 0.15 2.54 8.07 -154.02 -1.24 1.30 16 3 N -0.30 -6.05 12.18 32.99 0.40 -5.65 16 4 N -0.31 -7.08 9.70 30.31 0.29 -6.79 16 5 C 0.38 7.88 6.21 -318.88 -1.98 5.90 16 6 N -0.47 -10.22 4.77 -176.09 -0.84 -11.06 16 7 C 0.04 0.89 8.65 60.06 0.52 1.41 16 8 C 0.23 5.75 2.31 -68.87 -0.16 5.59 16 9 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 10 C -0.17 -4.49 8.20 37.16 0.30 -4.19 16 11 C -0.51 -13.49 7.80 -34.44 -0.27 -13.76 16 12 H 0.06 1.66 6.82 -52.48 -0.36 1.31 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 N -0.47 -7.94 2.81 -114.09 -0.32 -8.26 16 20 C 0.12 1.52 5.99 -4.04 -0.02 1.49 16 21 C -0.14 -1.78 5.91 -26.73 -0.16 -1.94 16 22 C 0.07 0.74 5.94 37.16 0.22 0.96 16 23 O -0.37 -4.73 10.23 -35.23 -0.36 -5.09 16 24 C 0.01 0.08 6.16 37.16 0.23 0.31 16 25 C 0.27 2.38 5.63 37.16 0.21 2.59 16 26 F -0.20 -2.54 17.28 2.25 0.04 -2.51 16 27 F -0.20 -2.32 17.28 2.25 0.04 -2.28 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.55 7.35 -51.93 -0.38 0.17 16 31 H 0.04 0.85 6.57 -51.93 -0.34 0.51 16 32 H 0.09 1.84 6.28 -51.93 -0.33 1.52 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.80 6.61 -51.93 -0.34 0.45 16 35 H 0.03 0.87 5.92 -51.93 -0.31 0.56 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.09 0.75 7.37 -51.93 -0.38 0.37 16 39 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 44 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -34.81 381.82 -8.43 -43.23 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.96 Total: 0.39 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.08 Total: 1.06 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.16 Total: -56.47 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.36 Total: -5.09 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.08 Total: -4.78 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.81 -8.43 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001762502086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.072 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds