Wall clock time and date at job start Tue Mar 31 2020 17:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30288 * 126.35068 * 2 1 4 4 N 1.28525 * 110.05543 * 179.76112 * 3 2 1 5 5 C 1.31214 * 109.86067 * 0.45497 * 4 3 2 6 6 N 1.38580 * 126.47174 * 179.82378 * 5 4 3 7 7 C 1.46891 * 111.00039 * 306.02650 * 6 5 4 8 8 C 1.46897 * 111.00402 * 69.98577 * 6 5 4 9 9 H 1.09005 * 109.47007 * 54.99540 * 8 6 5 10 10 C 1.53003 * 109.47092 * 295.00125 * 8 6 5 11 11 C 1.50695 * 109.47465 * 174.99734 * 8 6 5 12 12 H 1.08003 * 120.00078 * 0.02562 * 11 8 6 13 13 C 1.37874 * 120.00069 * 180.02562 * 11 8 6 14 14 N 1.31520 * 120.00099 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 120.00024 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46875 * 59.99818 * 15 13 11 17 17 H 1.48500 * 109.47127 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46808 * 299.99675 * 15 13 11 19 19 N 1.36453 * 107.05361 * 359.55658 * 5 4 3 20 20 C 1.46498 * 127.13764 * 180.28557 * 19 5 4 21 21 C 1.52996 * 109.47538 * 93.68381 * 20 19 5 22 22 C 1.52998 * 109.47563 * 179.97438 * 21 20 19 23 23 O 1.42897 * 109.47317 * 179.97438 * 22 21 20 24 24 C 1.42897 * 114.00130 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47142 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.46639 * 299.99219 * 25 24 23 27 27 F 1.39894 * 109.47348 * 59.99743 * 25 24 23 28 28 H 1.08994 * 109.47844 * 269.95929 * 1 2 3 29 29 H 1.09001 * 109.47012 * 29.96053 * 1 2 3 30 30 H 1.09007 * 109.47410 * 149.95437 * 1 2 3 31 31 H 1.08999 * 109.47286 * 54.17738 * 7 6 5 32 32 H 1.08999 * 109.47286 * 174.17744 * 7 6 5 33 33 H 1.09001 * 109.47300 * 294.17972 * 7 6 5 34 34 H 1.09001 * 109.46854 * 300.00085 * 10 8 6 35 35 H 1.08996 * 109.47101 * 59.99223 * 10 8 6 36 36 H 1.08997 * 109.47350 * 180.02562 * 10 8 6 37 37 H 0.97000 * 119.99914 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46929 * 213.68375 * 20 19 5 39 39 H 1.08998 * 109.47241 * 333.68115 * 20 19 5 40 40 H 1.09002 * 109.47006 * 299.99947 * 21 20 19 41 41 H 1.08998 * 109.47071 * 59.99631 * 21 20 19 42 42 H 1.08994 * 109.47285 * 300.00355 * 22 21 20 43 43 H 1.09008 * 109.46587 * 59.99794 * 22 21 20 44 44 H 1.09009 * 109.46853 * 299.99860 * 24 23 22 45 45 H 1.08993 * 109.47110 * 59.99482 * 24 23 22 46 46 H 1.09006 * 109.47050 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2792 1.0493 0.0000 4 7 3.5128 0.6887 0.0050 5 6 3.5944 -0.6209 -0.0013 6 7 4.7579 -1.3737 -0.0021 7 6 5.6408 -0.9770 -1.1070 8 6 5.4517 -1.2721 1.2887 9 1 4.7696 -1.5537 2.0910 10 6 5.9233 0.1677 1.5023 11 6 6.6418 -2.1964 1.2936 12 1 6.8612 -2.7989 0.4245 13 6 7.4507 -2.2731 2.4075 14 7 7.1838 -1.5391 3.4657 15 14 8.9264 -3.4184 2.4132 16 1 9.8558 -3.0337 1.3208 17 1 9.6276 -3.3157 3.7182 18 1 8.4692 -4.8158 2.2051 19 7 2.3173 -1.1014 -0.0008 20 6 1.9009 -2.5060 -0.0006 21 6 1.6675 -2.9687 1.4389 22 6 1.2320 -4.4353 1.4390 23 8 1.0146 -4.8676 2.7836 24 6 0.6028 -6.2313 2.8964 25 6 0.4002 -6.5825 4.3716 26 9 1.6021 -6.3998 5.0638 27 9 -0.5837 -5.7516 4.9180 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3634 -0.8896 -0.5146 31 1 5.8220 0.0968 -1.0598 32 1 6.5884 -1.5093 -1.0239 33 1 5.1673 -1.2241 -2.0571 34 1 6.6053 0.4494 0.7000 35 1 5.0625 0.8363 1.4988 36 1 6.4385 0.2431 2.4599 37 1 7.7527 -1.5933 4.2495 38 1 0.9775 -2.6112 -0.5702 39 1 2.6805 -3.1162 -0.4565 40 1 2.5909 -2.8635 2.0085 41 1 0.8879 -2.3584 1.8948 42 1 0.3086 -4.5402 0.8695 43 1 2.0114 -5.0458 0.9829 44 1 -0.3339 -6.3737 2.3573 45 1 1.3691 -6.8787 2.4702 46 1 0.0856 -7.6227 4.4576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001762502086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:35 Heat of formation + Delta-G solvation = -80.132341 kcal Electronic energy + Delta-G solvation = -29682.002793 eV Core-core repulsion = 25278.707965 eV Total energy + Delta-G solvation = -4403.294828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.83748 -47.91179 -43.93866 -39.19474 -39.01038 -36.82239 -34.90734 -33.26563 -32.61481 -30.81130 -30.53333 -28.48131 -27.24667 -27.03162 -26.66366 -23.83022 -23.35976 -23.06135 -21.73503 -21.03106 -18.84262 -18.43520 -18.41486 -17.86615 -17.71883 -17.46480 -17.07578 -16.95515 -16.50782 -16.49110 -15.65670 -15.45607 -15.02347 -14.86170 -14.75259 -14.68639 -14.28980 -14.18372 -13.95210 -13.63550 -13.55999 -13.34048 -13.29718 -13.14303 -13.08515 -12.97505 -12.67819 -12.64688 -12.44212 -12.22005 -12.12547 -12.05627 -12.01657 -11.82899 -11.46454 -11.11133 -10.91342 -10.71502 -10.53451 -9.93487 -9.45943 -8.14763 -6.29003 0.76502 1.36970 1.44554 1.46518 1.54146 1.85020 2.36975 2.43202 2.99472 3.08680 3.16107 3.40472 3.53214 3.61302 3.63448 3.87431 3.97543 4.07549 4.17744 4.22389 4.26721 4.37006 4.39091 4.44443 4.54011 4.57746 4.63695 4.71629 4.72882 4.82066 4.94275 4.96278 5.01523 5.07356 5.09275 5.13034 5.18111 5.42041 5.59633 5.64571 5.86595 6.01459 6.07986 6.19037 6.63588 6.80694 7.40273 7.79114 8.92094 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.007367 B = 0.004501 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3799.742098 B = 6219.409085 C = 9198.431223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.178 3.822 3 N -0.342 5.342 4 N -0.350 5.350 5 C 0.351 3.649 6 N -0.464 5.464 7 C 0.049 3.951 8 C 0.240 3.760 9 H -0.007 1.007 10 C -0.155 4.155 11 C -0.516 4.516 12 H 0.074 0.926 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.289 1.289 18 H -0.267 1.267 19 N -0.467 5.467 20 C 0.119 3.881 21 C -0.129 4.129 22 C 0.075 3.925 23 O -0.417 6.417 24 C 0.003 3.997 25 C 0.254 3.746 26 F -0.227 7.227 27 F -0.221 7.221 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.024 0.976 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.262 0.738 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.232 -13.493 -7.491 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 N -0.182 5.182 4 N -0.193 5.193 5 C -0.007 4.007 6 N -0.189 5.189 7 C -0.098 4.098 8 C 0.134 3.866 9 H 0.011 0.989 10 C -0.214 4.214 11 C -0.555 4.555 12 H 0.092 0.908 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.793 3.207 16 H -0.190 1.190 17 H -0.215 1.215 18 H -0.192 1.192 19 N -0.161 5.161 20 C -0.003 4.003 21 C -0.167 4.167 22 C -0.001 4.001 23 O -0.337 6.337 24 C -0.074 4.074 25 C 0.202 3.798 26 F -0.209 7.209 27 F -0.202 7.202 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.161 0.839 39 H 0.121 0.879 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.115 0.885 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.842 -12.374 -7.209 23.666 hybrid contribution 1.181 -0.578 0.832 1.556 sum -17.660 -12.952 -6.378 22.810 Atomic orbital electron populations 1.20458 0.79681 1.06389 1.05158 1.25796 0.98423 0.81731 1.03021 1.73854 0.96884 1.26383 1.21120 1.74572 1.12750 1.10137 1.21862 1.22856 0.87144 0.88364 1.02310 1.59278 1.02655 1.49637 1.07355 1.22245 0.97115 0.99061 0.91373 1.18983 0.91919 0.92994 0.82736 0.98928 1.22233 0.99285 0.98214 1.01686 1.21219 1.09726 1.23465 1.01058 0.90832 1.25800 1.00759 0.97314 0.94876 1.70065 1.40050 1.41100 1.04981 0.85453 0.78800 0.79220 0.77237 1.19009 1.21526 1.19171 1.46542 1.05153 1.09606 1.54771 1.21922 1.04281 0.76592 0.97490 1.21721 1.01474 0.97235 0.96304 1.22411 1.01775 0.93085 0.82818 1.87945 1.89349 1.27612 1.28765 1.23972 1.03927 0.84478 0.94981 1.22862 0.72555 0.96650 0.87776 1.92983 1.48844 1.96939 1.82114 1.92958 1.62948 1.76462 1.87851 0.88763 0.87817 0.87018 0.95702 0.89489 0.90841 0.94778 0.95533 0.92235 0.92898 0.83938 0.87913 0.94956 0.90676 0.88499 0.91798 0.86727 0.88454 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.25 71.23 0.73 -0.25 16 2 C 0.18 5.59 8.07 137.64 1.11 6.70 16 3 N -0.34 -14.15 12.18 -49.54 -0.60 -14.75 16 4 N -0.35 -16.32 9.70 -58.01 -0.56 -16.88 16 5 C 0.35 14.96 6.21 260.11 1.62 16.57 16 6 N -0.46 -20.64 4.77 -711.03 -3.39 -24.03 16 7 C 0.05 1.98 8.65 127.69 1.11 3.09 16 8 C 0.24 12.78 2.31 44.17 0.10 12.88 16 9 H -0.01 -0.44 8.11 -2.38 -0.02 -0.46 16 10 C -0.15 -8.49 8.20 71.98 0.59 -7.90 16 11 C -0.52 -28.01 7.80 25.60 0.20 -27.81 16 12 H 0.07 3.79 6.82 -2.91 -0.02 3.77 16 13 C 0.01 0.64 5.30 84.65 0.45 1.09 16 14 N -0.92 -54.87 11.32 21.45 0.24 -54.63 16 15 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 N -0.47 -15.34 2.81 -514.88 -1.45 -16.79 16 20 C 0.12 2.67 5.99 86.38 0.52 3.19 16 21 C -0.13 -3.29 5.91 30.59 0.18 -3.11 16 22 C 0.08 1.38 5.94 71.98 0.43 1.81 16 23 O -0.42 -10.11 10.23 -148.98 -1.52 -11.63 16 24 C 0.00 0.04 6.16 71.98 0.44 0.49 16 25 C 0.25 4.04 5.63 71.98 0.41 4.45 16 26 F -0.23 -5.93 17.28 44.97 0.78 -5.15 16 27 F -0.22 -4.88 17.28 44.97 0.78 -4.11 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.04 7.35 -2.38 -0.02 1.03 16 31 H 0.02 1.06 6.57 -2.39 -0.02 1.04 16 32 H 0.09 3.52 6.28 -2.39 -0.01 3.50 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.03 1.78 6.61 -2.39 -0.02 1.77 16 35 H 0.03 1.45 5.92 -2.39 -0.01 1.44 16 36 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 37 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.14 1.66 7.37 -2.39 -0.02 1.64 16 39 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.18 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -83.50 381.82 5.16 -78.34 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.99 Total: 13.14 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 7.88 Total: 11.19 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.76 Total: -127.09 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.52 Total: -11.63 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.55 Total: -9.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -83.50 5.16 -78.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001762502086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.790 kcal (2) G-P(sol) polarization free energy of solvation -83.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds