Wall clock time and date at job start Tue Mar 31 2020 18:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47124 * 2 1 4 4 C 1.50699 * 109.47232 * 120.00780 * 2 1 3 5 5 H 1.08000 * 120.00086 * 119.99598 * 4 2 1 6 6 C 1.37879 * 119.99724 * 299.99658 * 4 2 1 7 7 N 1.31516 * 119.99812 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99850 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47344 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47583 * 119.99925 * 8 6 4 11 11 H 1.48502 * 109.46837 * 239.99942 * 8 6 4 12 12 N 1.46909 * 109.46700 * 240.00427 * 2 1 3 13 13 C 1.46895 * 110.99794 * 183.95580 * 12 2 1 14 14 C 1.38015 * 111.00163 * 60.00081 * 12 2 1 15 15 N 1.31759 * 126.33569 * 60.48351 * 14 12 2 16 16 N 1.28522 * 110.07444 * 180.02562 * 15 14 12 17 17 C 1.31544 * 109.85576 * 0.02562 * 16 15 14 18 18 C 1.47016 * 126.48922 * 180.02562 * 17 16 15 19 19 N 1.32430 * 126.71093 * 359.97221 * 18 17 16 20 20 C 1.34109 * 105.52674 * 180.02562 * 19 18 17 21 21 C 1.50701 * 126.15941 * 179.97438 * 20 19 18 22 22 H 1.09005 * 115.54797 * 334.32692 * 21 20 19 23 23 C 1.52997 * 117.50168 * 188.62012 * 21 20 19 24 24 C 1.52997 * 60.00185 * 252.51021 * 23 21 20 25 25 H 1.09001 * 117.49869 * 107.48706 * 24 23 21 26 26 C 1.52992 * 117.51883 * 252.51920 * 24 23 21 27 27 N 1.30084 * 107.68567 * 359.97438 * 20 19 18 28 28 O 1.21276 * 110.55449 * 359.70666 * 27 20 19 29 29 N 1.36142 * 126.33479 * 240.17626 * 14 12 2 30 30 C 1.46502 * 127.14121 * 0.02562 * 29 14 12 31 31 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46556 * 299.99629 * 1 2 3 33 33 H 1.08998 * 109.47371 * 59.99540 * 1 2 3 34 34 H 0.97000 * 119.99360 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47668 * 65.77961 * 13 12 2 36 36 H 1.08999 * 109.47275 * 185.78109 * 13 12 2 37 37 H 1.09004 * 109.46775 * 305.77961 * 13 12 2 38 38 H 1.09005 * 117.49769 * 0.02562 * 23 21 20 39 39 H 1.09000 * 117.49771 * 145.01841 * 23 21 20 40 40 H 1.09007 * 109.47496 * 128.62397 * 26 24 23 41 41 H 1.08998 * 109.47479 * 248.63124 * 26 24 23 42 42 H 1.09000 * 109.47518 * 8.62964 * 26 24 23 43 43 H 1.09000 * 109.47104 * 95.62454 * 30 29 14 44 44 H 1.08994 * 109.47010 * 215.62869 * 30 29 14 45 45 H 1.09003 * 109.46965 * 335.62519 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3226 -1.1199 4.0077 9 1 3.1475 -2.2867 3.6035 10 1 3.1474 -0.1863 4.8160 11 1 1.1679 -1.5870 4.8163 12 7 2.0196 -0.6925 -1.1996 13 6 3.4850 -0.7946 -1.1872 14 6 1.5771 -0.0665 -2.3473 15 7 1.8299 1.1758 -2.7060 16 7 1.2632 1.4343 -3.8303 17 6 0.6137 0.3733 -4.2576 18 6 -0.1609 0.2650 -5.5025 19 7 -0.3401 1.2141 -6.4085 20 6 -1.1080 0.6623 -7.3595 21 6 -1.5949 1.3408 -8.6139 22 1 -1.6766 2.4264 -8.5598 23 6 -2.6246 0.5960 -9.4658 24 6 -1.1807 0.7295 -9.9540 25 1 -0.5562 -0.1635 -9.9282 26 6 -0.9131 1.6887 -11.1154 27 7 -1.3569 -0.5640 -7.0041 28 8 -0.8205 -0.8182 -5.9466 29 7 0.8034 -0.6204 -3.3210 30 6 0.2770 -1.9869 -3.3622 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.7091 1.1611 3.4845 35 1 3.7975 -1.4387 -0.3653 36 1 3.8277 -1.2181 -2.1313 37 1 3.9172 0.1975 -1.0559 38 1 -2.9502 -0.3847 -9.1187 39 1 -3.3842 1.1915 -9.9722 40 1 -0.1042 2.3682 -10.8465 41 1 -0.6296 1.1183 -11.9999 42 1 -1.8147 2.2633 -11.3274 43 1 -0.7392 -1.9969 -2.9681 44 1 0.2707 -2.3429 -4.3924 45 1 0.9079 -2.6377 -2.7568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772146787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:01 Heat of formation + Delta-G solvation = 198.146751 kcal Electronic energy + Delta-G solvation = -28289.507066 eV Core-core repulsion = 24348.968512 eV Total energy + Delta-G solvation = -3940.538554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.77246 -42.78629 -38.55976 -37.31207 -35.77367 -34.96384 -33.24894 -32.66682 -29.82550 -29.29470 -28.99867 -27.66195 -25.81809 -25.18382 -24.89440 -24.48406 -22.46322 -21.95327 -21.30709 -20.37661 -19.72902 -18.38233 -18.18562 -16.90662 -16.59030 -16.28605 -15.99363 -15.77099 -15.26593 -14.75047 -14.62021 -13.88469 -13.67948 -13.38053 -13.32452 -13.18988 -12.97840 -12.80968 -12.46413 -12.42685 -12.20656 -12.00351 -11.85887 -11.58059 -11.32516 -11.26674 -11.18942 -11.03945 -10.87478 -10.65243 -10.59854 -10.43342 -10.33980 -10.21551 -10.13838 -9.97560 -9.21560 -8.71408 -8.61576 -7.95155 -6.16101 -4.23416 0.38931 1.59875 1.90090 2.23749 2.35765 2.99943 3.21568 3.22414 3.30813 3.33420 3.33650 3.76136 4.20300 4.24751 4.37322 4.38174 4.43459 4.67266 4.79152 4.84569 5.15607 5.16368 5.24284 5.26357 5.31555 5.35019 5.39362 5.47794 5.52416 5.60682 5.65928 5.71452 5.83817 5.84898 5.97141 6.18317 6.41846 6.54219 6.61564 6.80722 6.88602 7.19468 7.44912 7.61971 7.76070 7.83681 8.05214 8.26543 8.71144 8.80516 9.42069 10.90860 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.033482 B = 0.002307 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.070090 B =12133.776770 C =12181.292086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.224 3.776 3 H 0.026 0.974 4 C -0.513 4.513 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.476 5.476 13 C 0.050 3.950 14 C 0.420 3.580 15 N -0.305 5.305 16 N -0.199 5.199 17 C 0.194 3.806 18 C 0.284 3.716 19 N -0.434 5.434 20 C 0.211 3.789 21 C -0.077 4.077 22 H 0.139 0.861 23 C -0.153 4.153 24 C -0.129 4.129 25 H 0.107 0.893 26 C -0.124 4.124 27 N -0.381 5.381 28 O 0.080 5.920 29 N -0.453 5.453 30 C 0.075 3.925 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -4.329 -21.223 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.120 3.880 3 H 0.044 0.956 4 C -0.551 4.551 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.204 5.204 13 C -0.097 4.097 14 C 0.065 3.935 15 N -0.153 5.153 16 N -0.049 5.049 17 C -0.069 4.069 18 C 0.064 3.936 19 N -0.169 5.169 20 C -0.062 4.062 21 C -0.097 4.097 22 H 0.157 0.843 23 C -0.191 4.191 24 C -0.149 4.149 25 H 0.125 0.875 26 C -0.181 4.181 27 N -0.089 5.089 28 O 0.022 5.978 29 N -0.147 5.147 30 C -0.067 4.067 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.638 -3.513 -21.686 22.453 hybrid contribution -0.028 -1.108 1.184 1.622 sum -4.666 -4.621 -20.501 21.527 Atomic orbital electron populations 1.21863 0.97444 0.99568 1.00366 1.19542 0.92468 0.93189 0.82789 0.95606 1.21039 1.32179 1.12843 0.89066 0.91319 1.24928 0.94951 0.94985 0.99139 1.69901 1.36138 1.22577 1.23812 0.86364 0.78595 0.79512 0.82477 1.19617 1.20938 1.20986 1.59241 1.12165 1.50557 0.98395 1.22240 0.84006 1.02008 1.01444 1.22853 0.91880 0.88102 0.90657 1.75141 1.21721 1.11918 1.06554 1.74601 1.05807 1.19381 1.05094 1.19619 1.07628 0.88692 0.90934 1.23873 0.93980 0.82460 0.93334 1.72267 1.16284 1.26972 1.01332 1.24790 0.95878 0.87835 0.97658 1.20238 1.05708 0.99103 0.84609 0.84317 1.23269 0.92312 1.02276 1.01260 1.22516 0.98340 1.01087 0.92933 0.87477 1.21406 1.02269 0.98306 0.96107 1.74540 1.17854 1.18233 0.98246 1.85476 1.48356 1.36591 1.27354 1.46280 1.38945 1.12682 1.16784 1.22214 1.01584 0.78646 1.04302 0.94593 0.88659 0.98038 0.92646 0.88922 0.93552 0.93940 0.87781 0.87286 0.91546 0.91589 0.92001 0.89514 0.89616 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.84 37.16 0.33 -2.86 16 2 C 0.22 5.38 1.99 -68.86 -0.14 5.25 16 3 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 4 C -0.51 -12.92 7.98 -34.44 -0.27 -13.20 16 5 H 0.07 1.67 6.41 -52.49 -0.34 1.34 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.22 11.32 55.43 0.63 -23.60 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.48 -9.61 4.58 -176.21 -0.81 -10.42 16 13 C 0.05 0.90 9.09 60.06 0.55 1.45 16 14 C 0.42 8.23 4.95 -319.44 -1.58 6.65 16 15 N -0.30 -6.56 12.14 30.23 0.37 -6.19 16 16 N -0.20 -4.04 12.24 32.50 0.40 -3.64 16 17 C 0.19 3.38 7.98 -153.63 -1.23 2.15 16 18 C 0.28 4.38 8.23 -14.04 -0.12 4.26 16 19 N -0.43 -6.78 11.59 -10.22 -0.12 -6.90 16 20 C 0.21 2.77 7.72 -156.61 -1.21 1.56 16 21 C -0.08 -0.74 6.05 -91.77 -0.56 -1.29 16 22 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 23 C -0.15 -1.14 9.79 -26.73 -0.26 -1.40 16 24 C -0.13 -0.99 6.11 -90.62 -0.55 -1.54 16 25 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 26 C -0.12 -0.70 10.19 37.15 0.38 -0.33 16 27 N -0.38 -5.07 11.74 31.27 0.37 -4.70 16 28 O 0.08 1.08 9.94 16.20 0.16 1.25 16 29 N -0.45 -7.48 3.23 -122.32 -0.40 -7.88 16 30 C 0.08 0.89 10.75 59.85 0.64 1.53 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 33 H 0.00 0.01 7.23 -51.93 -0.38 -0.36 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.09 1.64 6.46 -51.93 -0.34 1.31 16 36 H 0.05 0.71 8.06 -51.93 -0.42 0.30 16 37 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 38 H 0.10 0.85 7.91 -51.93 -0.41 0.44 16 39 H 0.11 0.59 8.05 -51.93 -0.42 0.17 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.81 7.11 -51.93 -0.37 0.44 16 45 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -30.00 379.28 -9.14 -39.14 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.32 Total: -1.62 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -4.11 Total: 3.77 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.44 Total: -63.32 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.16 Total: 1.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.00 -9.14 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772146787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.290 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds