Wall clock time and date at job start Tue Mar 31 2020 18:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47124 * 2 1 4 4 C 1.50699 * 109.47232 * 120.00780 * 2 1 3 5 5 H 1.08000 * 120.00086 * 119.99598 * 4 2 1 6 6 C 1.37879 * 119.99724 * 299.99658 * 4 2 1 7 7 N 1.31516 * 119.99812 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99850 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47344 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47583 * 119.99925 * 8 6 4 11 11 H 1.48502 * 109.46837 * 239.99942 * 8 6 4 12 12 N 1.46909 * 109.46700 * 240.00427 * 2 1 3 13 13 C 1.46895 * 110.99794 * 183.95580 * 12 2 1 14 14 C 1.38015 * 111.00163 * 60.00081 * 12 2 1 15 15 N 1.31759 * 126.33569 * 60.48351 * 14 12 2 16 16 N 1.28522 * 110.07444 * 180.02562 * 15 14 12 17 17 C 1.31544 * 109.85576 * 0.02562 * 16 15 14 18 18 C 1.47016 * 126.48922 * 180.02562 * 17 16 15 19 19 N 1.32430 * 126.71093 * 359.97221 * 18 17 16 20 20 C 1.34109 * 105.52674 * 180.02562 * 19 18 17 21 21 C 1.50701 * 126.15941 * 179.97438 * 20 19 18 22 22 H 1.09005 * 115.54797 * 334.32692 * 21 20 19 23 23 C 1.52997 * 117.50168 * 188.62012 * 21 20 19 24 24 C 1.52997 * 60.00185 * 252.51021 * 23 21 20 25 25 H 1.09001 * 117.49869 * 107.48706 * 24 23 21 26 26 C 1.52992 * 117.51883 * 252.51920 * 24 23 21 27 27 N 1.30084 * 107.68567 * 359.97438 * 20 19 18 28 28 O 1.21276 * 110.55449 * 359.70666 * 27 20 19 29 29 N 1.36142 * 126.33479 * 240.17626 * 14 12 2 30 30 C 1.46502 * 127.14121 * 0.02562 * 29 14 12 31 31 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46556 * 299.99629 * 1 2 3 33 33 H 1.08998 * 109.47371 * 59.99540 * 1 2 3 34 34 H 0.97000 * 119.99360 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47668 * 65.77961 * 13 12 2 36 36 H 1.08999 * 109.47275 * 185.78109 * 13 12 2 37 37 H 1.09004 * 109.46775 * 305.77961 * 13 12 2 38 38 H 1.09005 * 117.49769 * 0.02562 * 23 21 20 39 39 H 1.09000 * 117.49771 * 145.01841 * 23 21 20 40 40 H 1.09007 * 109.47496 * 128.62397 * 26 24 23 41 41 H 1.08998 * 109.47479 * 248.63124 * 26 24 23 42 42 H 1.09000 * 109.47518 * 8.62964 * 26 24 23 43 43 H 1.09000 * 109.47104 * 95.62454 * 30 29 14 44 44 H 1.08994 * 109.47010 * 215.62869 * 30 29 14 45 45 H 1.09003 * 109.46965 * 335.62519 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3226 -1.1199 4.0077 9 1 3.1475 -2.2867 3.6035 10 1 3.1474 -0.1863 4.8160 11 1 1.1679 -1.5870 4.8163 12 7 2.0196 -0.6925 -1.1996 13 6 3.4850 -0.7946 -1.1872 14 6 1.5771 -0.0665 -2.3473 15 7 1.8299 1.1758 -2.7060 16 7 1.2632 1.4343 -3.8303 17 6 0.6137 0.3733 -4.2576 18 6 -0.1609 0.2650 -5.5025 19 7 -0.3401 1.2141 -6.4085 20 6 -1.1080 0.6623 -7.3595 21 6 -1.5949 1.3408 -8.6139 22 1 -1.6766 2.4264 -8.5598 23 6 -2.6246 0.5960 -9.4658 24 6 -1.1807 0.7295 -9.9540 25 1 -0.5562 -0.1635 -9.9282 26 6 -0.9131 1.6887 -11.1154 27 7 -1.3569 -0.5640 -7.0041 28 8 -0.8205 -0.8182 -5.9466 29 7 0.8034 -0.6204 -3.3210 30 6 0.2770 -1.9869 -3.3622 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.7091 1.1611 3.4845 35 1 3.7975 -1.4387 -0.3653 36 1 3.8277 -1.2181 -2.1313 37 1 3.9172 0.1975 -1.0559 38 1 -2.9502 -0.3847 -9.1187 39 1 -3.3842 1.1915 -9.9722 40 1 -0.1042 2.3682 -10.8465 41 1 -0.6296 1.1183 -11.9999 42 1 -1.8147 2.2633 -11.3274 43 1 -0.7392 -1.9969 -2.9681 44 1 0.2707 -2.3429 -4.3924 45 1 0.9079 -2.6377 -2.7568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772146787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:00 Heat of formation + Delta-G solvation = 180.220310 kcal Electronic energy + Delta-G solvation = -28290.284415 eV Core-core repulsion = 24348.968512 eV Total energy + Delta-G solvation = -3941.315903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.88942 -44.23842 -39.26212 -38.98067 -36.87263 -36.29274 -35.01138 -33.94719 -31.54363 -30.81822 -29.60238 -28.84360 -27.56315 -26.32011 -26.17415 -25.94757 -23.64425 -23.58987 -22.01352 -21.35213 -21.33606 -19.51217 -19.29223 -18.55869 -18.08867 -17.75796 -17.16342 -16.90680 -16.74815 -16.43313 -15.58571 -15.27183 -15.03504 -14.53753 -14.30010 -14.19939 -14.01630 -13.82080 -13.79309 -13.69432 -13.31802 -13.08852 -13.06811 -12.88988 -12.80862 -12.68485 -12.53292 -12.40632 -12.26293 -12.25090 -12.17498 -12.04335 -11.94690 -11.37077 -11.25986 -11.10456 -10.85630 -10.58448 -10.14131 -9.68625 -8.13668 -6.27421 -0.85642 0.43039 0.58495 0.93999 1.10836 1.47450 1.49788 1.55051 1.61106 2.21986 2.42952 2.56089 2.81036 2.87398 3.18285 3.27224 3.50418 3.67925 3.76783 3.84133 3.90462 4.12316 4.24564 4.29810 4.35545 4.47013 4.53222 4.58595 4.62622 4.69256 4.71103 4.74589 4.83438 4.88687 4.89816 4.93307 5.03556 5.06593 5.14717 5.22646 5.34342 5.37446 5.62078 5.72118 5.89172 6.11399 6.45929 6.71294 6.83048 7.24530 7.42145 8.93625 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.033482 B = 0.002307 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.070090 B =12133.776770 C =12181.292086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.233 3.767 3 H -0.020 1.020 4 C -0.518 4.518 5 H 0.079 0.921 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.465 5.465 13 C 0.051 3.949 14 C 0.405 3.595 15 N -0.339 5.339 16 N -0.236 5.236 17 C 0.214 3.786 18 C 0.275 3.725 19 N -0.451 5.451 20 C 0.212 3.788 21 C -0.102 4.102 22 H 0.147 0.853 23 C -0.138 4.138 24 C -0.121 4.121 25 H 0.098 0.902 26 C -0.122 4.122 27 N -0.380 5.380 28 O 0.093 5.907 29 N -0.443 5.443 30 C 0.064 3.936 31 H 0.047 0.953 32 H 0.068 0.932 33 H -0.001 1.001 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.096 0.904 39 H 0.134 0.866 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -6.293 -23.044 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.127 3.873 3 H -0.002 1.002 4 C -0.556 4.556 5 H 0.097 0.903 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.181 1.181 10 H -0.213 1.213 11 H -0.209 1.209 12 N -0.192 5.192 13 C -0.096 4.096 14 C 0.049 3.951 15 N -0.187 5.187 16 N -0.084 5.084 17 C -0.051 4.051 18 C 0.055 3.945 19 N -0.187 5.187 20 C -0.060 4.060 21 C -0.122 4.122 22 H 0.165 0.835 23 C -0.175 4.175 24 C -0.141 4.141 25 H 0.116 0.884 26 C -0.179 4.179 27 N -0.087 5.087 28 O 0.035 5.965 29 N -0.135 5.135 30 C -0.076 4.076 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.115 0.885 39 H 0.152 0.848 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.132 0.868 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.245 -5.515 -23.536 24.736 hybrid contribution 0.091 -0.504 1.559 1.641 sum -5.154 -6.019 -21.977 23.361 Atomic orbital electron populations 1.21639 0.97348 0.99715 0.98934 1.19206 0.92455 0.91095 0.84513 1.00206 1.21333 1.31879 1.12892 0.89477 0.90292 1.25770 0.95145 0.95606 1.02198 1.70051 1.37493 1.24136 1.24329 0.85333 0.77980 0.78615 0.78647 1.18098 1.21269 1.20943 1.59158 1.13241 1.49363 0.97448 1.22297 0.82785 1.01255 1.03232 1.22695 0.93196 0.88095 0.91126 1.75026 1.22936 1.13357 1.07408 1.74509 1.07595 1.20971 1.05356 1.19775 1.06096 0.88104 0.91112 1.23559 0.94708 0.83293 0.92956 1.72274 1.16804 1.27648 1.01996 1.25396 0.94875 0.87609 0.98072 1.20532 1.08014 0.99603 0.84008 0.83494 1.23374 0.92593 1.01800 0.99771 1.22601 0.98469 1.00823 0.92168 0.88361 1.21432 1.02866 0.98041 0.95523 1.74526 1.17746 1.18415 0.98034 1.85481 1.47879 1.35769 1.27360 1.46418 1.37707 1.13912 1.15453 1.22643 1.02155 0.76273 1.06518 0.93403 0.91312 0.98181 0.92795 0.88447 0.90639 0.95759 0.88530 0.84769 0.91937 0.90524 0.90605 0.88327 0.86833 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.84 71.98 0.64 -5.07 16 2 C 0.23 11.43 1.99 44.17 0.09 11.52 16 3 H -0.02 -1.14 8.09 -2.39 -0.02 -1.16 16 4 C -0.52 -26.10 7.98 25.60 0.20 -25.90 16 5 H 0.08 3.75 6.41 -2.91 -0.02 3.73 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -51.56 11.32 21.45 0.24 -51.32 16 8 Si 0.97 41.04 29.54 68.60 2.03 43.06 16 9 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.47 -18.76 4.58 -711.41 -3.26 -22.02 16 13 C 0.05 1.82 9.09 127.69 1.16 2.98 16 14 C 0.41 15.95 4.95 260.31 1.29 17.24 16 15 N -0.34 -15.05 12.14 -58.27 -0.71 -15.76 16 16 N -0.24 -9.79 12.24 -51.10 -0.63 -10.42 16 17 C 0.21 7.41 7.98 135.79 1.08 8.49 16 18 C 0.28 8.28 8.23 87.01 0.72 8.99 16 19 N -0.45 -13.85 11.59 -302.48 -3.51 -17.36 16 20 C 0.21 5.33 7.72 138.54 1.07 6.40 16 21 C -0.10 -1.78 6.05 -11.54 -0.07 -1.85 16 22 H 0.15 2.29 8.14 -2.38 -0.02 2.27 16 23 C -0.14 -1.69 9.79 30.59 0.30 -1.39 16 24 C -0.12 -1.60 6.11 -10.80 -0.07 -1.66 16 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 26 C -0.12 -1.08 10.19 71.98 0.73 -0.35 16 27 N -0.38 -9.50 11.74 -58.14 -0.68 -10.18 16 28 O 0.09 2.37 9.94 68.03 0.68 3.04 16 29 N -0.44 -14.22 3.23 -540.91 -1.75 -15.97 16 30 C 0.06 1.38 10.75 127.77 1.37 2.75 16 31 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 33 H 0.00 -0.04 7.23 -2.39 -0.02 -0.06 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.10 3.35 6.46 -2.39 -0.02 3.34 16 36 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 37 H 0.02 0.94 8.12 -2.39 -0.02 0.92 16 38 H 0.10 1.36 7.91 -2.38 -0.02 1.35 16 39 H 0.13 0.98 8.05 -2.39 -0.02 0.96 16 40 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 0.48 7.90 -2.39 -0.02 0.46 16 43 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.11 1.81 7.11 -2.39 -0.02 1.79 16 45 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 Total: -1.00 -66.55 379.28 2.40 -64.15 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.02 Total: 9.52 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 8.97 Total: 23.24 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -10.29 Total: -143.02 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.68 Total: 3.04 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -66.55 2.40 -64.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772146787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.368 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds